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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0379700 |
| Transcript ID | LotjaGi1g1v0379700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor; TAIR: AT5G25190.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|P16146|PZ02_LUPPO Protein PPLZ02; TrEMBL-Plants: tr|A0A1J7H7R5|A0A1J7H7R5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0379700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86095274..86096800) extracted from Lotus japonicus Gifu genome v1.2.
AAATATATACTACTTCTGTACATAATATACAATATAATTGAAACAATGGATTGAAAGACATGTAATTGTTTCTTAATCAT GGTTTGCAAATTGCTATACAGCCAAGTTATAGCTGATAGAGTGATAGGTGAAGAAAAAGAAGGTGAGACCTCAAAAATAC CATGTGGGACCCTCACAGTGCTTAAATTGGTGCCAGATTGATTATAAAAAAAAGAATACCACATTTGGAACAAGCCCAAC TACATAAACCCACACCCTCTTCTTCTTCTTCCTTCCCCTGCAGTTGGTACCACAACATAAACAACTCTCTCTTTCACTCA AACATAAACAACAACACTTTCTGAAAAGATTACAAATTCTTTTGCCTAACATGGCCAGACCACAACAGCGTTACCGAGGC GTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGACACCCTATATTGTAAGTCGCACACATTTATGAAAACTC ATTCGAAAATTACGACGAAACCAAAATCACAGTGGACAATGGACATAAGCAACTTCTGTTGGCTTTTGATTATGTTCACT ATGATTTTTGCTTTTACATAATTTTCGAAGTGAGGTACTTTTGAAACCATCCACCACCTTATTGAATGAAAAATAAATTG ATGTGTTCAGGAAAACTAGGATATGGCTTGGGACATTTGAAACTGCTGAGGATGCAGCTAGAGCATACGATGAAGCCGCG AGGCTAATGTGCGGTGCGAGAGCAAGAACAAACTTCCCTTACAACCCCAATGCGTCTCAGTCTTCATCTTCCAAGCTTCT CTCAGCAACTTTAACTGCTAAACTGCATAGATGCTACATGGCTTCTCTGCAAATGACAAGGCCTTCAATGCCAGAGCCTC AAAGAGCTGCAGATTCCCCAAATGTGGCCAACACAAGCAACATTCCCATGAAAAATGGTGAAATTGAAGAAATGTTGGCA CATAAGAGGCCTAAGGAGGAACAAGAATCCGAGGGGAATTGGGTTTTGAAGAAGGTTAAGGCAGAGAGTGCTCACAACGC TATGTTTGAATATCCGATGACACCAATGCAGACAGATGTTAACACACAATTCAAGATAAAAAGTGAACGGAACTCTTATT ATGGATCGGATGAAAGTCGGTTCACATTGCAGTTAAGGCCTCTTGAAGAAGATCATAATCATATAGAGCAAATGATAGAG GAGCTACTTCATTATGGTTCCATTGAGCTTTGTTCTTATCCAACACAGGCTCTGTGATTCATGATTTGACTTTGAGCATT TTGTTGTTGCTACTTCCACATTCTTATATTCTGCTAATTTAACCAATTACTAGTACCTTAGCTTCTTATATCTATAGGCG TCCTAGATATTTTTCTAAGAGACACCATTGGACAATGTTCTGTGTATAGCCAATCATGTTGTTATCTGTGAAATTATGCA TGTTTCCTGGCTCTTTGTTCTAAAACTTCTGCTATTTGCATTACCAATTGCAGAATCAGCTTCTTGTCTGAAATGGAAGG AGGTTTG
CDS sequence (LotjaGi1g1v0379700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAGACCACAACAGCGTTACCGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGACACCCTAT ATTGAAAACTAGGATATGGCTTGGGACATTTGAAACTGCTGAGGATGCAGCTAGAGCATACGATGAAGCCGCGAGGCTAA TGTGCGGTGCGAGAGCAAGAACAAACTTCCCTTACAACCCCAATGCGTCTCAGTCTTCATCTTCCAAGCTTCTCTCAGCA ACTTTAACTGCTAAACTGCATAGATGCTACATGGCTTCTCTGCAAATGACAAGGCCTTCAATGCCAGAGCCTCAAAGAGC TGCAGATTCCCCAAATGTGGCCAACACAAGCAACATTCCCATGAAAAATGGTGAAATTGAAGAAATGTTGGCACATAAGA GGCCTAAGGAGGAACAAGAATCCGAGGGGAATTGGGTTTTGAAGAAGGTTAAGGCAGAGAGTGCTCACAACGCTATGTTT GAATATCCGATGACACCAATGCAGACAGATGTTAACACACAATTCAAGATAAAAAGTGAACGGAACTCTTATTATGGATC GGATGAAAGTCGGTTCACATTGCAGTTAAGGCCTCTTGAAGAAGATCATAATCATATAGAGCAAATGATAGAGGAGCTAC TTCATTATGGTTCCATTGAGCTTTGTTCTTATCCAACACAGGCTCTGTGA
Protein sequence (LotjaGi1g1v0379700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPYNPNASQSSSSKLLSA TLTAKLHRCYMASLQMTRPSMPEPQRAADSPNVANTSNIPMKNGEIEEMLAHKRPKEEQESEGNWVLKKVKAESAHNAMF EYPMTPMQTDVNTQFKIKSERNSYYGSDESRFTLQLRPLEEDHNHIEQMIEELLHYGSIELCSYPTQAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 157 | 157 | 2.5E-88 | – | |
| PANTHER | 1 | 157 | 157 | 2.5E-88 | – | |
| CDD | 6 | 66 | 61 | 6.13824E-35 | ||
| Gene3D | 6 | 66 | 61 | 2.0E-29 | ||
| SMART | 7 | 70 | 64 | 1.5E-40 | ||
| Pfam | 7 | 56 | 50 | 2.0E-11 | ||
| SUPERFAMILY | 7 | 66 | 60 | 9.15E-21 | ||
| ProSiteProfiles | 7 | 64 | 58 | 21.101 | ||
| PRINTS | 8 | 19 | 12 | 4.1E-11 | ||
| PRINTS | 30 | 46 | 17 | 4.1E-11 | ||
| MobiDBLite | 99 | 119 | 21 | - | – | |
| PANTHER | 189 | 223 | 35 | 2.5E-88 | – | |
| PANTHER | 189 | 223 | 35 | 2.5E-88 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0379700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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