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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0383300 |
| Transcript ID | LotjaGi1g1v0383300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosome-recycling factor; TAIR: AT3G01800.1 Ribosome recycling factor; Swiss-Prot: sp|Q3A398|RRF_PELCD Ribosome-recycling factor; TrEMBL-Plants: tr|I1M0P2|I1M0P2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0383300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86668101..86672481) extracted from Lotus japonicus Gifu genome v1.2.
ACCAAATAAGTGAGTGTCAAAAATAGATTGTTATTAGTACTCTGAAAAAGTGATAGACTGATAAAAATGGGGTGCTACTT CATTTCATTCACGATCACGTTATACAAAGCTGCAATAATGGAAGGTAGATCTTTTGGCGGATATACATAACTGATTCAAA GTAATTTAACTTACCGATCTGGTTAGCCGAATCCATCTGAATCACACACACACAAAAATCAAACCCTAAAAATCATAACT ATCATAACCGGACCGGACAATTCGATAATGAACCCGGCCAGTGACCGGTCAATTTGGTGAAAATCGGCGTTTTCTACGGG CTAGGCTGGTTCATGAAAAAACAGCATTTTGGGCTGGCCTGGTAGGCTTGGTCCAACACCAAAACGGCAAAAAGTGACCC AAAAAAATTGAGCTGAAGCAGTCAAACGCAAACGAGAGTGAAAGAGGGAAACCCTTCCTTCCTCGTCGTCGTCGCCGCCG CCGCTACCACCCACCGCCGCAGCTTCTGTCCGTCGAGCCGCCGCTCAGTTGCACGCTCCAGCGATCTACAATATCCAACG TGAGACCCTTTTGCTCTGCTCTTTTTAGTTTAGCTCCTGCTATGTTTTCTTCAGTATGCTCATGCCCTGTTTATCAGTAA TGGCACACTGTTCTTCTTCAGTATACTCATGCCCTGTTTTGTCATCTGTGCATGATTGGATTGCTTATGCTTAGAAATGG TTTCTTTCCGTTTACTCTGATGCTCCAGAATACTGGTATCACATGCTATGTAACAAAACAGAAGAATTATATTTGTTCAT TTAGAAAAGTTTAATTGTGTGCTTACATTGTTAATTTAATTAGTCTCCCATGAAATTTGGTTTATTTAGGATCAAGTATT TTTATAGAACTATAGATTCATGTAGTCTCATCTGTTTGTTATTGTTTATTGGCAGACCAAAATAAGAATCAAGCAAGTGT GATGTCTGGGTACATTAGACGAGCAATCTCGTGCCAGAACTTGTTACAGCTCCGAAACTCTGCTTTCCATGTTTGTGATG TCCCTGGTGCTATCCAAATTCGTGCGTTGGAAAGTAATAGGGTATCCACTCTTCCAGCTGCAGCTAATTTTATTGTAGAA AGTCGCAGAGCCTTTGCAAAAGGGCGTAAGTCAAGTATGTCGTTACCTCTCTACTGAAAATTAAATTTTGTTACAGTGTT GGTTCTTTTGTTGATTTTGTTAATTTAAGGAGTGGAATTAAGTATACTCGTTGTTTTTGTAAGGTTTCTCTTTTGAGTGC CTAAATTTTACTTAGAGGAGTGATTTGAGTTGTAGCTGTGTATGGATTTTGGTGGTAGTACGATTTGTTTTATGGGGTTT CAGCCAAAATTTCAAGGTCTGAATACAAATTGTATTCTGCATCTTCTTGAAGAATATTTCTAAAAAATGAACAAAACTCT GGAAAATGAAAGAACTTTGGAACAGTTCCTTGATTTTCCAAGACACTTTTCTGAACTGGAAGCATGTGGAAATTAAAAGT TTAAGCAATAATGCTTGTAAATAATTTTATGATTTCAAGCGCAATAGCCATAGTGCAAGCAGAAACTTCCTCCCCCTCCC TCCTTACAAATACAATCTGCTAGCTGGCTATATTTCAACTTGATATGAGATTTTTCTGATTAAGACATGTTGATACTTTA TAGCTTGCCTGAAAAAAATTCTTTGTTAAATAACCAGCGTATAAGTTATAACATAAATTAATGCTCGTTTTCAATGTTCT TTGATTTTAATGGTCATTGATTTATATATTTCAGAGGATGATGCTGGTATGAGTACAATTGAAGTTCCACTAGTCCTTGG GCCTACTATTAAGGCAAATGCTGTCTCACAGATGGAGGCTGCAATTTCTGCATTATCAACAGAACTAAGCAAGCTACGGA CAGGAAGGGCATCTCCAGGTATATAAATGCGTAATAAATTCGTAATTGTTTACATATTATCTGTGTCTGTGATAGTTAAT ACTCAACACACTAATGATGGGTTGTCTCTGCAGGAATGCTTGATCACATTATTGTAGAAACTGGTGGCGTGAAGATACCT CTGGTTCGGATTGCTCTTGTTTCGGTCATAGATCCAAAAACGTTATCTGTTAATCCTTATGATCCGCAGGTACTTTTTTA TTTGGAGCTGAAGTTTGTTATTTGTAGTGTGCTAAGTACTAAACTAGCATTACTTTTGCATATGATATGATTAACTTCTG CAGACCCTTAAACAATTAGAAAATGCCATTGTTTCGTCTCCATTGGGGTTAAATCCTAAAGCAGATGGCGAGAGATTGAT TGCTGCCATTCCACCGTAAGCATTCATTCTATTTACATTCTGTTAGTAATGCCTGTCGGAGTGAAGTTTGTTTGGATATA GTGGCTAATAAAGAACTTGACTTTATGCTCATAATTGATTGATCTACTTCACCGTGAAATAACCAGATTGACCAAAGAGC ATATGCAGGTATGCACATTACACTTACCCCGTTGATTTATGGTTTACACTTAACATTCCTTATCAGATAGTATGCTGCTA TATCATTTCATTTGACATTTATTCTAGGCCATGAATAAGTTGGTGACTAAATCTTGTGAAGATGCTCGGCAAAGCATTAG AAGAGCTCGGCAAAAGGTAGTCAGGCTTAGCTATTTCCCTTGAGTTATTTTTTGTTAGGCACTGACAAATGTCTTCCGTT TTTATGCTCAAATTACCACTTGCTGCATTCTGATGAATTTTCAAATATGCACTCAAATCTAATATTCTATGAAGTACGAA CTATGATTAAAGATGCTGATTTTACAGGCAATGGATGCCATTAAGAAATTGAATTCAAGTCTCCCCAAGGACGACATTAA AAGATTGGAGAAAGAAGTAAGTTACCTGTGCTTATTGCAGAAATTAAGATGACGAGAATCCATGGCTTTTTGGTTTCTGA TATTTTCTGCATTCAGGTTGATGATTTGACAAAAAAGTTTATTAAGACCGCGGAAGATACATGCAAAGCAAAGGAGAAGG AAATTAGTCAAGGTTGAGACCCGGTGTTATTGCTAGAATTTGCAGAGGATTTACTGCTGCATTTCTCATTTAATTTGCCG AGGCCTGAAATTTGTGTGGTCTTAGCTGAGTATCTTTTAACTCATAATTATATGTAAGGAGTAAGGACTACCTTGGTATT CTAGCAATTTTGAAGACAAAAGATGAATCTCAGTTTCAACCTGTTTTGGTTTGGAGTTGCTGCATTGGTGCAGGCTGCTG TGTGTTGTGCTAACCCTTTGTTTGTCCAAATTTGTGGATGTCCTGCTATAAGCGCATAGTTACTTTAGTTGGAGATATAA ACTAATCTAAGCTGACTGTCGAGAATTGATGGTCGAAACATTTTTAAGATAAATTACAAAATGCTCAATACAAGCATTCT ACAGGGGCATACTAAGTGTCCTAGTATTGGAGACAAAATATAGTACACCAATGTTTTTCTTTGGTGTCGCACAATGTGGG CATTAAAATAAGTTCCAGCTTTGGTCCCATGATTTTTACCAACTACAATAGATCATCTTGGTTCACTTTACATTTTTACC CACTAAATCCATGATTGGTTTTTGCTTGATCTGGAAGAGAAAGAAGTTTGGTTAACAATGGAGGTGAGAGAGAGTAAGTG GAGGAGAGATAACCCATTATCTCTCTCCATGGTGTTTAAGCGGCTATTCACGGTAGGACATGCAGAGGGAGCTACTAGGA ATGTAAGGAAGGAGATTAAGGGCATGAGAGAGAATCAATAAGAGAGGAGAGGCAGCCATGGACTCAGGCTAAGAAAGCTT GAGCTCAAGCGAAGTGGCAAGGGGATGCGTTGAAGCAGAGAAAAGGAGATTTAGAGTGACAAAGAACTCGAAATAAGAGA GTAGGGAAGAACACGGATCCTAATGATCATAAGTTCATGCTCTGATGAAGCAATGTGTTTCTAGAATTTTTGTACTCCAT ATACCAATTTGTGCATGGCATATCATGAGTTGTTGTGGCCCAACACCTTCGCTATGTTCTGTGTCAATGAGAGTTATTCC TTCAATCATCATTTGCGTTCAAGGACTTGAACGATGTCGTATAGGTTCGAGGTTGTAGAGGTCGATAATCTGTTGTCGCT TATAGACTGTGAGGGGCAACAACGAAACCAAGGAAGTTGCGACCAAAGACGGAGTCAGAGATGGAGTAGATGAAGTGGTG GAAGATATCGGGGAAGGAGAAAGCTACATAGTCGTCGTTCATAATCTTTGTTGCAAAACTAAACAGAAGGACAATTATGT AAATATAAAGAGGTGTGACCATTATTAGTAACCCGGAAAAAATGAGAGTCTAAATTTGGTC
CDS sequence (LotjaGi1g1v0383300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGGGTACATTAGACGAGCAATCTCGTGCCAGAACTTGTTACAGCTCCGAAACTCTGCTTTCCATGTTTGTGATGT CCCTGGTGCTATCCAAATTCGTGCGTTGGAAAGTAATAGGGTATCCACTCTTCCAGCTGCAGCTAATTTTATTGTAGAAA GTCGCAGAGCCTTTGCAAAAGGGCGTAAGTCAAAGGATGATGCTGGTATGAGTACAATTGAAGTTCCACTAGTCCTTGGG CCTACTATTAAGGCAAATGCTGTCTCACAGATGGAGGCTGCAATTTCTGCATTATCAACAGAACTAAGCAAGCTACGGAC AGGAAGGGCATCTCCAGGAATGCTTGATCACATTATTGTAGAAACTGGTGGCGTGAAGATACCTCTGGTTCGGATTGCTC TTGTTTCGGTCATAGATCCAAAAACGTTATCTGTTAATCCTTATGATCCGCAGACCCTTAAACAATTAGAAAATGCCATT GTTTCGTCTCCATTGGGGTTAAATCCTAAAGCAGATGGCGAGAGATTGATTGCTGCCATTCCACCATTGACCAAAGAGCA TATGCAGGCCATGAATAAGTTGGTGACTAAATCTTGTGAAGATGCTCGGCAAAGCATTAGAAGAGCTCGGCAAAAGGCAA TGGATGCCATTAAGAAATTGAATTCAAGTCTCCCCAAGGACGACATTAAAAGATTGGAGAAAGAAGTTGATGATTTGACA AAAAAGTTTATTAAGACCGCGGAAGATACATGCAAAGCAAAGGAGAAGGAAATTAGTCAAGGTTGA
Protein sequence (LotjaGi1g1v0383300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGYIRRAISCQNLLQLRNSAFHVCDVPGAIQIRALESNRVSTLPAAANFIVESRRAFAKGRKSKDDAGMSTIEVPLVLG PTIKANAVSQMEAAISALSTELSKLRTGRASPGMLDHIIVETGGVKIPLVRIALVSVIDPKTLSVNPYDPQTLKQLENAI VSSPLGLNPKADGERLIAAIPPLTKEHMQAMNKLVTKSCEDARQSIRRARQKAMDAIKKLNSSLPKDDIKRLEKEVDDLT KKFIKTAEDTCKAKEKEISQG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 51 | 259 | 209 | 1.4E-80 | – | |
| PANTHER | 51 | 259 | 209 | 1.4E-80 | ||
| SUPERFAMILY | 83 | 258 | 176 | 9.42E-52 | ||
| Gene3D | 90 | 258 | 169 | 2.1E-54 | – | |
| Pfam | 99 | 258 | 160 | 1.9E-54 | ||
| Gene3D | 109 | 183 | 75 | 2.1E-54 | – | |
| Coils | 199 | 219 | 21 | - | – | |
| Coils | 229 | 249 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi1g1v0383300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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