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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0383900 |
| Transcript ID | LotjaGi1g1v0383900.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF4050 family protein; TAIR: AT5G25360.3 hypothetical protein; Swiss-Prot: sp|Q9ZAH5|ALR1_STAA8 Alanine racemase 1; TrEMBL-Plants: tr|I1K8V0|I1K8V0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0383900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86733236..86736689) extracted from Lotus japonicus Gifu genome v1.2.
TGACAAAGCAAAGCAAACAACTGAAAGTGGCACAACACAACACAAACCTTTTTAAGATTTGGGGAAACGGCGCTACTATT GTTTCTGTTTTTCGATTTACAACCATGTTATCCTCATCTTTCAGGTTTTCCGTTTTTCTTACTCAACAAGTTTACTCTTT TACGTTTTCTCCCCGTTTTATTTTCTTTATTAAAATTCTGAGAGTTTTTTTATTTTTGTTAATGATAGTTTGTTTATGCA GGGTATTGATTTATCTCCTTATTCTTGGACACAGAATTTTAGGTTACAGATCTCTTCTCTGACTTCTGTAAATGCATATT TGTAGATATGTTCCTCCATGGCTCTCTCAGATTCTCGCCTGTATGGGGTAAGTAAGTTCCTTCTTCTTCTCTCTTTCTTT CATCAATGAAATATTAACAAAGATTGTGTCTATGATTTATATGTGTGTGTGTGTGGTTTTAGACTACTTTTCTAGTGGTT GTGAGCTTTTGTTGACTAAGAAGTTAAGGGAAGAAAATGAACTCTGAGATTGGGTTGTGTGAGTGTGAGAGATCCAATGT CACTGGTCTCACTGGAAAGCTTAGAATTGGCTGCTGTACTTGAGTAGTACATGGTTCTAAATTGTGGTCTTCAACTGAAA TTGCAGCCGAAACATAAAGGGTTTTAGCCTCCCTATATCAGCATCGCGAACGCAATTACCGCTGCACGCGTTTGTCCGCA CTTCCGCAGCGCAGCCTCAATTTAAAACCCTGCTTGAGGTGATTAGGTGTTGCTGATTTTTTAGGTGTGGTTCTGGAATT TCAGGAAACTGTAAATTTGATATCTTTGTATTTGCTTTTAAGAAGCATGAGATTTCGTGGGTGTACAGGGTTGCCTGATA TTCACCTTTATTGTTTGTCATTCTTTCCTTGGATTCCTCATAAGCTATTAGTGGTAATATGGTACATACAATTTTGGCCC CTCTGTTAGTGTGAACTTAAATGGGAAGAACTTACTTTAGTGTTCTTGTGCTTTCTGTTTCTGCCATTTAAAAGTTGAAC TCAGTAAGCCACAATTCCGATGTCACTGTAAGGAGAATGGTGTCCTAATCTAGGGTGTGTTTGGTTAAACAGCCTAATTG AGCGCTTATTCATAAGCTAATTTGAGAAACTTAATGAAATAAGCTCAAAATAGGTTATAGGTTGGTATAGGCGTTTATTT ATAAGCTAATTGGAGTAGCTTATGAAAGTAAGCTTTTAACACCTTATAGGTAGTCATAAGTTATTCAAATGAGCTCTCCC AAACACCTGAACCAGCATTTATGCTATAAGATATGCTTAAATAAACTCTTCCAAACAGGGCTTGAGGTAATTAATTGACA TGAAAGTGTTGGGACTTGGAAGGGTAAGATTGTTTCTGTTTATCTATTTGTGCATGAAATAGGTACTATAGATAGTTTAT TATTATTACCAAATTTAAGAATTGAGATTGCTAGCTTAATCAAATAAGTCAAGTTCATTAATATATGGAAATCATGGGTC TATAGCCTGTAATAGAAAAACTAAAATCAAAACATGAACCTGTTCTTTTATGGTGCACAGGACAAAGACATGGGTAACTA TAAGAGGAAGTTCATATTTGTTCAGTGTGGACCTGAAAACATCTTCAGCTAACATTCCAAAATAATTGATAGATGAAAAT ACACATAAAGTAGGCTCCAATACCTCTCTGTTTTTTAATGTATATGTATTGTTTTGGTCGTAGTGAACCACCCTTGCTGG GTTGTAACTGGCACCTGTAATCATGCAAATATTTGTCATCAATGTCACCTTCTTTATATCCAAGCTGGGAGATTAATTAT CAGCTAATCTTTGTGACAAATGTCATCTTCTTTAAATCAAAACTGGCAGACTAATTATAGTTAATAGTCAGTGTTAATCA TGCTTGTGGTTTGTAACAGAGCAGAGGTTGTCTTGGATGCTTTCCAAAACCTATCTCAATGGATGAGGCATCTAAGGGGC TAATAACTCAAGGCTCAGCAATTAATAACTATGACAGATCAGAAGATATTTGGAGCAGCAGCTCATTCTATATGGATCAC AGTGCAGGTTATTCCCAGAGAAGCTTCTCATCAATTACCATACCAAACCATCCTTCTGATCCTCAAAGCAGTGCTGGCAA TCAGATTGATCATCCTGAAGAATTTGTCAATCATGGCAAGTGCACTGTTATATGTCGCTTCATCTAATATCTGTCAGCGC ATCAGTTTGTATCATACTTATCAGAGGGTGTTTGTAATAATCTTGTATATTCTTGGTAGCCATTTAATCTGCTGTTTCCT GTTGGAAACAAAGTTTCTCCAATTGTTAGTAGAATCATGCCAGACATATATCTGATTTGCTCACTGTGACAAATTGGTTA CACAGACACTGCATGTGTTATTTCCCTCGTTGTATCTTTTCTTCTTGTAAACTGTAGGTTCTTTCATCTTGCTGAAATTT TCTAATTTCATCTGAATCATCTGATTACTATTCATGAAACTTAAAGTTAAAAATTAGTTTTCAGGATCTTTTTATCTGTA TATATAAATTTTTTTCTTCATTGTATAGGATATCCACTGCTGTATTTTTTTCTAACATTTTGTTGTGTATATATCAACTG TTATTCTAAGAACAACAATCTGATGTATGCAGGTCTTCGTCTCTGGAAGCAGACAAGGAAACAATGGGTTGGAAATAAAA AGACCGAGCGACGGATGCAAGTTGGAGAATCCAGAATAAGGTAGTGTACATGTATGCTTTCTGCAGGAAGCGCTCAGTAT TGAATTGCATAATAACATATTACAAAGGAAAAATAGTATATCATGACATTTCCATTGATTGTGTGGGCATTTTCTTGGGC ATTTTAATTCTAGGTTACTTTATAAGTTGTATATCAAGCTTCAATTCTGAAAATTATGTTTTACAGTTGGAATGCTACCT ACGAGAGTCTACTCGGAACCACCAGGCCATTTCGCCAGCCCATTCCTCTTGGAGTAAGTTCTTGCATTCTAACTTGCTTC TTTATCTGGTGATATTCTCGTATAATGAAGTACATGGCCCTAACTGATTATACCGTTATACGTGACAGGAAATGGTTGAG TTTCTTGTTGACATTTGGGAGCTAGAGGGGCTTGTATGACTAGCAGGAAAGGCTTTTCACCCTAGATTTTAGTGGAGAGA GGACGTGAGGTAGAATTTGTTCATCCTCCTAATATTCTATTGGATAGTTGTAAATGGGCTAACTCATATTAGTTACCTTT ATTTTATTTTTAAGAGGCTTCCTTTCTACATGAAGTAGATTAGATTTTGTAATCCTTCCTGCTTTTCTAAGCAAAGTAAT TGTGATGTACTTAAGTTAATTTCATGCTTAAGCTGTGATGCAAGCTTTTTTTTCTAACCGCTCTGTGTTTGGATATCTGT TGAATACAACATGG
CDS sequence (LotjaGi1g1v0383900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTCTCAGATTCTCGCCTGTATGGGAGCAGAGGTTGTCTTGGATGCTTTCCAAAACCTATCTCAATGGATGAGGC ATCTAAGGGGCTAATAACTCAAGGCTCAGCAATTAATAACTATGACAGATCAGAAGATATTTGGAGCAGCAGCTCATTCT ATATGGATCACAGTGCAGGTTATTCCCAGAGAAGCTTCTCATCAATTACCATACCAAACCATCCTTCTGATCCTCAAAGC AGTGCTGGCAATCAGATTGATCATCCTGAAGAATTTGTCAATCATGGTCTTCGTCTCTGGAAGCAGACAAGGAAACAATG GGTTGGAAATAAAAAGACCGAGCGACGGATGCAAGTTGGAGAATCCAGAATAAGTTGGAATGCTACCTACGAGAGTCTAC TCGGAACCACCAGGCCATTTCGCCAGCCCATTCCTCTTGGAGAAATGGTTGAGTTTCTTGTTGACATTTGGGAGCTAGAG GGGCTTGTATGA
Protein sequence (LotjaGi1g1v0383900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALSDSRLYGSRGCLGCFPKPISMDEASKGLITQGSAINNYDRSEDIWSSSSFYMDHSAGYSQRSFSSITIPNHPSDPQS SAGNQIDHPEEFVNHGLRLWKQTRKQWVGNKKTERRMQVGESRISWNATYESLLGTTRPFRQPIPLGEMVEFLVDIWELE GLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 162 | 153 | 2.1E-63 | – | |
| PANTHER | 10 | 162 | 153 | 2.1E-63 | – | |
| Pfam | 52 | 118 | 67 | 9.8E-12 | ||
| Pfam | 123 | 161 | 39 | 1.2E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0383900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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