Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0383900 |
| Transcript ID | LotjaGi1g1v0383900.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF4050 family protein; TAIR: AT5G25360.3 hypothetical protein; Swiss-Prot: sp|Q9ZAH5|ALR1_STAA8 Alanine racemase 1; TrEMBL-Plants: tr|I1K8V0|I1K8V0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0383900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86733246..86736665) extracted from Lotus japonicus Gifu genome v1.2.
AAGTGGCACAACACAACACAAACCTTTTTAAGATTTGGGGAAACGGCGCTACTATTGTTTCTGTTTTTCGATTTACAACC ATGTTATCCTCATCTTTCAGGTTTTCCGTTTTTCTTACTCAACAAGTTTACTCTTTTACGTTTTCTCCCCGTTTTATTTT CTTTATTAAAATTCTGAGAGTTTTTTTATTTTTGTTAATGATAGTTTGTTTATGCAGGGTATTGATTTATCTCCTTATTC TTGGACACAGAATTTTAGGTTACAGATCTCTTCTCTGACTTCTGTAAATGCATATTTGTAGATATGTTCCTCCATGGCTC TCTCAGATTCTCGCCTGTATGGGGTAAGTAAGTTCCTTCTTCTTCTCTCTTTCTTTCATCAATGAAATATTAACAAAGAT TGTGTCTATGATTTATATGTGTGTGTGTGTGGTTTTAGACTACTTTTCTAGTGGTTGTGAGCTTTTGTTGACTAAGAAGT TAAGGGAAGAAAATGAACTCTGAGATTGGGTTGTGTGAGTGTGAGAGATCCAATGTCACTGGTCTCACTGGAAAGCTTAG AATTGGCTGCTGTACTTGAGTAGTACATGGTTCTAAATTGTGGTCTTCAACTGAAATTGCAGCCGAAACATAAAGGGTTT TAGCCTCCCTATATCAGCATCGCGAACGCAATTACCGCTGCACGCGTTTGTCCGCACTTCCGCAGCGCAGCCTCAATTTA AAACCCTGCTTGAGGTGATTAGGTGTTGCTGATTTTTTAGGTGTGGTTCTGGAATTTCAGGAAACTGTAAATTTGATATC TTTGTATTTGCTTTTAAGAAGCATGAGATTTCGTGGGTGTACAGGGTTGCCTGATATTCACCTTTATTGTTTGTCATTCT TTCCTTGGATTCCTCATAAGCTATTAGTGGTAATATGGTACATACAATTTTGGCCCCTCTGTTAGTGTGAACTTAAATGG GAAGAACTTACTTTAGTGTTCTTGTGCTTTCTGTTTCTGCCATTTAAAAGTTGAACTCAGTAAGCCACAATTCCGATGTC ACTGTAAGGAGAATGGTGTCCTAATCTAGGGTGTGTTTGGTTAAACAGCCTAATTGAGCGCTTATTCATAAGCTAATTTG AGAAACTTAATGAAATAAGCTCAAAATAGGTTATAGGTTGGTATAGGCGTTTATTTATAAGCTAATTGGAGTAGCTTATG AAAGTAAGCTTTTAACACCTTATAGGTAGTCATAAGTTATTCAAATGAGCTCTCCCAAACACCTGAACCAGCATTTATGC TATAAGATATGCTTAAATAAACTCTTCCAAACAGGGCTTGAGGTAATTAATTGACATGAAAGTGTTGGGACTTGGAAGGG TAAGATTGTTTCTGTTTATCTATTTGTGCATGAAATAGGTACTATAGATAGTTTATTATTATTACCAAATTTAAGAATTG AGATTGCTAGCTTAATCAAATAAGTCAAGTTCATTAATATATGGAAATCATGGGTCTATAGCCTGTAATAGAAAAACTAA AATCAAAACATGAACCTGTTCTTTTATGGTGCACAGGACAAAGACATGGGTAACTATAAGAGGAAGTTCATATTTGTTCA GTGTGGACCTGAAAACATCTTCAGCTAACATTCCAAAATAATTGATAGATGAAAATACACATAAAGTAGGCTCCAATACC TCTCTGTTTTTTAATGTATATGTATTGTTTTGGTCGTAGTGAACCACCCTTGCTGGGTTGTAACTGGCACCTGTAATCAT GCAAATATTTGTCATCAATGTCACCTTCTTTATATCCAAGCTGGGAGATTAATTATCAGCTAATCTTTGTGACAAATGTC ATCTTCTTTAAATCAAAACTGGCAGACTAATTATAGTTAATAGTCAGTGTTAATCATGCTTGTGGTTTGTAACAGAGCAG AGGTTGTCTTGGATGCTTTCCAAAACCTATCTCAATGGATGAGGCATCTAAGGGGCTAATAACTCAAGGCTCAGCAATTA ATAACTATGACAGATCAGAAGATATTTGGAGCAGCAGCTCATTCTATATGGATCACAGTGCAGGTTATTCCCAGAGAAGC TTCTCATCAATTACCATACCAAACCATCCTTCTGATCCTCAAAGCAGTGCTGGCAATCAGATTGATCATCCTGAAGAATT TGTCAATCATGGCAAGTGCACTGTTATATGTCGCTTCATCTAATATCTGTCAGCGCATCAGTTTGTATCATACTTATCAG AGGGTGTTTGTAATAATCTTGTATATTCTTGGTAGCCATTTAATCTGCTGTTTCCTGTTGGAAACAAAGTTTCTCCAATT GTTAGTAGAATCATGCCAGACATATATCTGATTTGCTCACTGTGACAAATTGGTTACACAGACACTGCATGTGTTATTTC CCTCGTTGTATCTTTTCTTCTTGTAAACTGTAGGTTCTTTCATCTTGCTGAAATTTTCTAATTTCATCTGAATCATCTGA TTACTATTCATGAAACTTAAAGTTAAAAATTAGTTTTCAGGATCTTTTTATCTGTATATATAAATTTTTTTCTTCATTGT ATAGGATATCCACTGCTGTATTTTTTTCTAACATTTTGTTGTGTATATATCAACTGTTATTCTAAGAACAACAATCTGAT GTATGCAGGTCTTCGTCTCTGGAAGCAGACAAGGAAACAATGGGTTGGAAATAAAAAGACCGAGCGACGGATGCAAGTTG GAGAATCCAGAATAAGGTAGTGTACATGTATGCTTTCTGCAGGAAGCGCTCAGTATTGAATTGCATAATAACATATTACA AAGGAAAAATAGTATATCATGACATTTCCATTGATTGTGTGGGCATTTTCTTGGGCATTTTAATTCTAGGTTACTTTATA AGTTGTATATCAAGCTTCAATTCTGAAAATTATGTTTTACAGTTGGAATGCTACCTACGAGAGTCTACTCGGAACCACCA GGCCATTTCGCCAGCCCATTCCTCTTGGAGTAAGTTCTTGCATTCTAACTTGCTTCTTTATCTGGTGATATTCTCGTATA ATGAAGTACATGGCCCTAACTGATTATACCGTTATACGTGACAGGAAATGGTTGAGTTTCTTGTTGACATTTGGGAGCTA GAGGGGCTTGTATGACTAGCAGGAAAGGCTTTTCACCCTAGATTTTAGTGGAGAGAGGACGTGAGGTAGAATTTGTTCAT CCTCCTAATATTCTATTGGATAGTTGTAAATGGGCTAACTCATATTAGTTACCTTTATTTTATTTTTAAGAGGCTTCCTT TCTACATGAAGTAGATTAGATTTTGTAATCCTTCCTGCTTTTCTAAGCAAAGTAATTGTGATGTACTTAAGTTAATTTCA TGCTTAAGCTGTGATGCAAGCTTTTTTTTCTAACCGCTCTGTGTTTGGATATCTGTTGAA
CDS sequence (LotjaGi1g1v0383900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTCTCAGATTCTCGCCTGTATGGGAGCAGAGGTTGTCTTGGATGCTTTCCAAAACCTATCTCAATGGATGAGGC ATCTAAGGGGCTAATAACTCAAGGCTCAGCAATTAATAACTATGACAGATCAGAAGATATTTGGAGCAGCAGCTCATTCT ATATGGATCACAGTGCAGGTTATTCCCAGAGAAGCTTCTCATCAATTACCATACCAAACCATCCTTCTGATCCTCAAAGC AGTGCTGGCAATCAGATTGATCATCCTGAAGAATTTGTCAATCATGGTCTTCGTCTCTGGAAGCAGACAAGGAAACAATG GGTTGGAAATAAAAAGACCGAGCGACGGATGCAAGTTGGAGAATCCAGAATAAGTTGGAATGCTACCTACGAGAGTCTAC TCGGAACCACCAGGCCATTTCGCCAGCCCATTCCTCTTGGAGAAATGGTTGAGTTTCTTGTTGACATTTGGGAGCTAGAG GGGCTTGTATGA
Protein sequence (LotjaGi1g1v0383900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALSDSRLYGSRGCLGCFPKPISMDEASKGLITQGSAINNYDRSEDIWSSSSFYMDHSAGYSQRSFSSITIPNHPSDPQS SAGNQIDHPEEFVNHGLRLWKQTRKQWVGNKKTERRMQVGESRISWNATYESLLGTTRPFRQPIPLGEMVEFLVDIWELE GLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 162 | 153 | 2.1E-63 | – | |
| PANTHER | 10 | 162 | 153 | 2.1E-63 | – | |
| Pfam | 52 | 118 | 67 | 9.8E-12 | ||
| Pfam | 123 | 161 | 39 | 1.2E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0383900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…