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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0383900 |
| Transcript ID | LotjaGi1g1v0383900.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF4050 family protein; TAIR: AT5G25360.3 hypothetical protein; Swiss-Prot: sp|A3LZT3|DBP10_PICST ATP-dependent RNA helicase DBP10; TrEMBL-Plants: tr|C6TNH5|C6TNH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0383900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86733291..86736693) extracted from Lotus japonicus Gifu genome v1.2.
AACATGACAAAGCAAAGCAAACAACTGAAAGTGGCACAACACAACACAAACCTTTTTAAGATTTGGGGAAACGGCGCTAC TATTGTTTCTGTTTTTCGATTTACAACCATGTTATCCTCATCTTTCAGGTTTTCCGTTTTTCTTACTCAACAAGTTTACT CTTTTACGTTTTCTCCCCGTTTTATTTTCTTTATTAAAATTCTGAGAGTTTTTTTATTTTTGTTAATGATAGTTTGTTTA TGCAGGGTATTGATTTATCTCCTTATTCTTGGACACAGAATTTTAGGTTACAGATCTCTTCTCTGACTTCTGTAAATGCA TATTTGTAGATATGTTCCTCCATGGCTCTCTCAGATTCTCGCCTGTATGGGGTAAGTAAGTTCCTTCTTCTTCTCTCTTT CTTTCATCAATGAAATATTAACAAAGATTGTGTCTATGATTTATATGTGTGTGTGTGTGGTTTTAGACTACTTTTCTAGT GGTTGTGAGCTTTTGTTGACTAAGAAGTTAAGGGAAGAAAATGAACTCTGAGATTGGGTTGTGTGAGTGTGAGAGATCCA ATGTCACTGGTCTCACTGGAAAGCTTAGAATTGGCTGCTGTACTTGAGTAGTACATGGTTCTAAATTGTGGTCTTCAACT GAAATTGCAGCCGAAACATAAAGGGTTTTAGCCTCCCTATATCAGCATCGCGAACGCAATTACCGCTGCACGCGTTTGTC CGCACTTCCGCAGCGCAGCCTCAATTTAAAACCCTGCTTGAGGTGATTAGGTGTTGCTGATTTTTTAGGTGTGGTTCTGG AATTTCAGGAAACTGTAAATTTGATATCTTTGTATTTGCTTTTAAGAAGCATGAGATTTCGTGGGTGTACAGGGTTGCCT GATATTCACCTTTATTGTTTGTCATTCTTTCCTTGGATTCCTCATAAGCTATTAGTGGTAATATGGTACATACAATTTTG GCCCCTCTGTTAGTGTGAACTTAAATGGGAAGAACTTACTTTAGTGTTCTTGTGCTTTCTGTTTCTGCCATTTAAAAGTT GAACTCAGTAAGCCACAATTCCGATGTCACTGTAAGGAGAATGGTGTCCTAATCTAGGGTGTGTTTGGTTAAACAGCCTA ATTGAGCGCTTATTCATAAGCTAATTTGAGAAACTTAATGAAATAAGCTCAAAATAGGTTATAGGTTGGTATAGGCGTTT ATTTATAAGCTAATTGGAGTAGCTTATGAAAGTAAGCTTTTAACACCTTATAGGTAGTCATAAGTTATTCAAATGAGCTC TCCCAAACACCTGAACCAGCATTTATGCTATAAGATATGCTTAAATAAACTCTTCCAAACAGGGCTTGAGGTAATTAATT GACATGAAAGTGTTGGGACTTGGAAGGGTAAGATTGTTTCTGTTTATCTATTTGTGCATGAAATAGGTACTATAGATAGT TTATTATTATTACCAAATTTAAGAATTGAGATTGCTAGCTTAATCAAATAAGTCAAGTTCATTAATATATGGAAATCATG GGTCTATAGCCTGTAATAGAAAAACTAAAATCAAAACATGAACCTGTTCTTTTATGGTGCACAGGACAAAGACATGGGTA ACTATAAGAGGAAGTTCATATTTGTTCAGTGTGGACCTGAAAACATCTTCAGCTAACATTCCAAAATAATTGATAGATGA AAATACACATAAAGTAGGCTCCAATACCTCTCTGTTTTTTAATGTATATGTATTGTTTTGGTCGTAGTGAACCACCCTTG CTGGGTTGTAACTGGCACCTGTAATCATGCAAATATTTGTCATCAATGTCACCTTCTTTATATCCAAGCTGGGAGATTAA TTATCAGCTAATCTTTGTGACAAATGTCATCTTCTTTAAATCAAAACTGGCAGACTAATTATAGTTAATAGTCAGTGTTA ATCATGCTTGTGGTTTGTAACAGAGCAGAGGTTGTCTTGGATGCTTTCCAAAACCTATCTCAATGGATGAGGCATCTAAG GGGCTAATAACTCAAGGCTCAGCAATTAATAACTATGACAGATCAGAAGATATTTGGAGCAGCAGCTCATTCTATATGGA TCACAGTGCAGGTTATTCCCAGAGAAGCTTCTCATCAATTACCATACCAAACCATCCTTCTGATCCTCAAAGCAGTGCTG GCAATCAGATTGATCATCCTGAAGAATTTGTCAATCATGGCAAGTGCACTGTTATATGTCGCTTCATCTAATATCTGTCA GCGCATCAGTTTGTATCATACTTATCAGAGGGTGTTTGTAATAATCTTGTATATTCTTGGTAGCCATTTAATCTGCTGTT TCCTGTTGGAAACAAAGTTTCTCCAATTGTTAGTAGAATCATGCCAGACATATATCTGATTTGCTCACTGTGACAAATTG GTTACACAGACACTGCATGTGTTATTTCCCTCGTTGTATCTTTTCTTCTTGTAAACTGTAGGTTCTTTCATCTTGCTGAA ATTTTCTAATTTCATCTGAATCATCTGATTACTATTCATGAAACTTAAAGTTAAAAATTAGTTTTCAGGATCTTTTTATC TGTATATATAAATTTTTTTCTTCATTGTATAGGATATCCACTGCTGTATTTTTTTCTAACATTTTGTTGTGTATATATCA ACTGTTATTCTAAGAACAACAATCTGATGTATGCAGGTCTTCGTCTCTGGAAGCAGACAAGGAAACAATGGGTTGGAAAT AAAAAGACCGAGCGACGGATGCAAGTTGGAGAATCCAGAATAAGGTAGTGTACATGTATGCTTTCTGCAGGAAGCGCTCA GTATTGAATTGCATAATAACATATTACAAAGGAAAAATAGTATATCATGACATTTCCATTGATTGTGTGGGCATTTTCTT GGGCATTTTAATTCTAGGTTACTTTATAAGTTGTATATCAAGCTTCAATTCTGAAAATTATGTTTTACAGTTGGAATGCT ACCTACGAGAGTCTACTCGGAACCACCAGGCCATTTCGCCAGCCCATTCCTCTTGGAGTAAGTTCTTGCATTCTAACTTG CTTCTTTATCTGGTGATATTCTCGTATAATGAAGTACATGGCCCTAACTGATTATACCGTTATACGTGACAGGAAATGGT TGAGTTTCTTGTTGACATTTGGGAGCTAGAGGGGCTTGTATGACTAGCAGGAAAGGCTTTTCACCCTAGATTTTAGTGGA GAGAGGACGTGAGGTAGAATTTGTTCATCCTCCTAATATTCTATTGGATAGTTGTAAATGGGCTAACTCATATTAGTTAC CTTTATTTTATTTTTAAGAGGCTTCCTTTCTACATGAAGTAGATTAGATTTTGTAATCCTTCCTGCTTTTCTAAGCAAAG TAATTGTGATGTACTTAAGTTAATTTCATGCTTAAGCTGTGAT
CDS sequence (LotjaGi1g1v0383900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATATTTGTAGATATGTTCCTCCATGGCTCTCTCAGATTCTCGCCTGTATGGGAGGTTGTCTTGGATGCTTTCCAAA ACCTATCTCAATGGATGAGGCATCTAAGGGGCTAATAACTCAAGGCTCAGCAATTAATAACTATGACAGATCAGAAGATA TTTGGAGCAGCAGCTCATTCTATATGGATCACAGTGCAGGTTATTCCCAGAGAAGCTTCTCATCAATTACCATACCAAAC CATCCTTCTGATCCTCAAAGCAGTGCTGGCAATCAGATTGATCATCCTGAAGAATTTGTCAATCATGGTCTTCGTCTCTG GAAGCAGACAAGGAAACAATGGGTTGGAAATAAAAAGACCGAGCGACGGATGCAAGTTGGAGAATCCAGAATAAGTTGGA ATGCTACCTACGAGAGTCTACTCGGAACCACCAGGCCATTTCGCCAGCCCATTCCTCTTGGAGAAATGGTTGAGTTTCTT GTTGACATTTGGGAGCTAGAGGGGCTTGTATGA
Protein sequence (LotjaGi1g1v0383900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHICRYVPPWLSQILACMGGCLGCFPKPISMDEASKGLITQGSAINNYDRSEDIWSSSSFYMDHSAGYSQRSFSSITIPN HPSDPQSSAGNQIDHPEEFVNHGLRLWKQTRKQWVGNKKTERRMQVGESRISWNATYESLLGTTRPFRQPIPLGEMVEFL VDIWELEGLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 169 | 169 | 1.2E-67 | – | |
| Pfam | 59 | 125 | 67 | 1.1E-11 | ||
| Pfam | 130 | 168 | 39 | 1.3E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0383900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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