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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0384100 |
| Transcript ID | LotjaGi1g1v0384100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor; TAIR: AT5G25390.2 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q3E958|SHN3_ARATH Ethylene-responsive transcription factor SHINE 3; TrEMBL-Plants: tr|I3T2U9|I3T2U9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0384100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86756438..86758168) extracted from Lotus japonicus Gifu genome v1.2.
TCATCACACACTCCATAAACTTAAAAAAAACCTGCACCTATTTGACATTGTACTTCAATCTCAAACCCCCCTTATTAACT CCCCTTCCATCTAGTTTCAATTCTCTGCAACCAACCGCATTTTTATATCCACTCACAAATCAAAGCAGCATCATGGTACA AGCCAAAAAGTTCAGAGGAGTTAGGCAGCGCCAGTGGGGCTCCTGGGTGTCAGAGATTCGCCACCCATTACTGTATTAAC CTCATTAAACTTCAATCTGATACAATCTATACAATGCATCTGCTTTCACTTTCATGATTTTTATAGCCATAATATATATA CATTAACTCCCTTACCTTACCTTACTCTTTTTCATGTCATATTTATTTGGATTTTATTATTTTTTTACTATTTAAGTATC ATATATAACTGATTTGCTGCTATTCATGAAACCTACATTCACTAAAGTCAGGGTTCGTGGCTGACTGATTCGGACGACTC TGATTCTAAGAGGTTATTGTGCACTTAAAATCAACCTATTTGAATCAGAGTCGTCTAATTAAGATCGGACTGTTATAAAC CCGTGGCTTTAGTGAATGCATGATCCTCTAACTGCACGGAATCGGAGTCCATGAAATTGGGACATCTAGTAGAACATTTC CTCTTCTTGTATTATTGTGAATTAAGATATCTCAAATCAATTCGGGACTAGAAGCTGGTTACAGAAGTTTTTCCTCAGAG TTGGTTCTGACTTCAGAATCAATTTGTCAAACGGTTCCACACTAAATTAATTTTTGTGGTGTGCAGGAAGAGAAGGGTGT GGCTAGGAACATTTGAGACAGCAGAGGCAGCAGCAAGGGCATATGACCAAGCAGCAATTTTGATGAATGGACAGAATGCC AAGACCAATTTCCCCAATTCAAGGAACCAAGCTGGAGATGCTGCAACCTCGAATTGTGATGATGACTCTTTCTTATCTCC CAAGGCACTTTCAGAGCTTCTCAGCACAAAGCTCAGAAAATACTGCAAAGACCCATCTCCATCTGTCACATGTCTGAGGC TAGATGCTGATAATTCCCACATTGGAGTGTGGCAGAAAGGAGCAGGGCCTCATTCTAACTCTAATTGGGTTATGAGGGTG GAGCTTGGGAAGAAACAGAATGAGGGACATTCAGTTTCCACAGGTTCACCACAACATGTTTGTAGTAATGCTGCAAAGAG GGTGGAAGAAGAGGACAGAGTTGCTTTACAGATGATTGAGGAGCTGCTTAATTGGAACTATCCTTGTGCTTCTTCAACTT CAAGTAACTCCCAGCAGGAAGAAAAATTGAATCTTCCATGTCATGATGGATGATTCTTAGAATAGCAACCCCATTTTCTG CTATCTTTTTTCATGTACCTTTTGTCTTCTGTTACAAATTTAGTCCAGTGATGATAATTGCCTCTTTGATAGTTACTTAT GCAATATTGTGATTGGGATTTAGGAAGCATAAGAATTTGGATCAAATAAGGAAGTTGAAATTGAAATTGTGAAAAAAAAA AAGAATTTAATCTGTCAATTTTAATCATTGTTTTGAATTAAAACCCAAAGGGTTGGAAAAGAAAAGCCAGTCTCATGTAC CATGCTCTGTAGTCATGATCTAATAGGTAAAGTAACATTATGGGTTAATTCCACGTTAGTTCAAAACACGATTTTACCGC ATTGAGTATGATGTAGATCAGATAAGTATGATTTTACCACATTAAGTTGAA
CDS sequence (LotjaGi1g1v0384100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTACAAGCCAAAAAGTTCAGAGGAGTTAGGCAGCGCCAGTGGGGCTCCTGGGTGTCAGAGATTCGCCACCCATTACT GAAGAGAAGGGTGTGGCTAGGAACATTTGAGACAGCAGAGGCAGCAGCAAGGGCATATGACCAAGCAGCAATTTTGATGA ATGGACAGAATGCCAAGACCAATTTCCCCAATTCAAGGAACCAAGCTGGAGATGCTGCAACCTCGAATTGTGATGATGAC TCTTTCTTATCTCCCAAGGCACTTTCAGAGCTTCTCAGCACAAAGCTCAGAAAATACTGCAAAGACCCATCTCCATCTGT CACATGTCTGAGGCTAGATGCTGATAATTCCCACATTGGAGTGTGGCAGAAAGGAGCAGGGCCTCATTCTAACTCTAATT GGGTTATGAGGGTGGAGCTTGGGAAGAAACAGAATGAGGGACATTCAGTTTCCACAGGTTCACCACAACATGTTTGTAGT AATGCTGCAAAGAGGGTGGAAGAAGAGGACAGAGTTGCTTTACAGATGATTGAGGAGCTGCTTAATTGGAACTATCCTTG TGCTTCTTCAACTTCAAGTAACTCCCAGCAGGAAGAAAAATTGAATCTTCCATGTCATGATGGATGA
Protein sequence (LotjaGi1g1v0384100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPNSRNQAGDAATSNCDDD SFLSPKALSELLSTKLRKYCKDPSPSVTCLRLDADNSHIGVWQKGAGPHSNSNWVMRVELGKKQNEGHSVSTGSPQHVCS NAAKRVEEEDRVALQMIEELLNWNYPCASSTSSNSQQEEKLNLPCHDG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 187 | 186 | 9.4E-96 | – | |
| PANTHER | 2 | 187 | 186 | 9.4E-96 | – | |
| CDD | 5 | 65 | 61 | 3.89254E-24 | ||
| Gene3D | 5 | 65 | 61 | 2.4E-29 | ||
| ProSiteProfiles | 6 | 63 | 58 | 22.036 | ||
| SMART | 6 | 69 | 64 | 7.9E-40 | ||
| Pfam | 6 | 55 | 50 | 3.6E-11 | ||
| SUPERFAMILY | 6 | 65 | 60 | 5.95E-20 | ||
| PRINTS | 7 | 18 | 12 | 3.3E-10 | ||
| PRINTS | 29 | 45 | 17 | 3.3E-10 | ||
| MobiDBLite | 189 | 208 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0384100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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