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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0385000 |
| Transcript ID | LotjaGi1g1v0385000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nucleotide/sugar transporter family protein; TAIR: AT4G32390.1 Nucleotide-sugar transporter family protein; Swiss-Prot: sp|Q9SUV2|PT432_ARATH Probable sugar phosphate/phosphate translocator At4g32390; TrEMBL-Plants: tr|I1JUD7|I1JUD7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0385000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86891987..86893024) extracted from Lotus japonicus Gifu genome v1.2.
GGATCTCTAAGCGACGGCGTAGTGAAGAAGATCGTCCTCTCCTACACCTACGTAGCCATATGGATCTTCCTCTCCTTCAC CGTAATCGTCTACAACAAATACATCCTCGACAAGAAGATGTACAATTGGCCATTCCCAATCTCCCTCACCATGATCCACA TGTCCTTCTGCGCCTCCCTCGCCTTCTTCCTCGTCCGCGTCCTCCGCCTCGTCGAACCCGTCTCCATGTCTCGCGACGTC TACCTCTCCTCCGTCGTCCCCATCGGCGCTCTCTACTCCCTCTCCCTCTGGCTCTCCAACTCCGCCTACATCTACCTCTC CGTCTCCTTCATCCAAATGCTCAAAGCCCTCATGCCCGTCGCTGTTTACTCCATCGGCGTCCTCCTCCGCAAAGAATCCT ACAAAAACGACACCATGTGTAACATGCTCTCCATCTCCGCCGGCGTCGCCGTCGCCGCCTACGGCGAAGCCCGTTTCGAT ACATGGGGTGTCCTCCTCCAGCTCGGCGCCGTCGCGTTTGAAGCCACCAGGCTTGTCCTCATCCAAATCCTCCTCACCTC CAAAGGGATCTCGCTCAACCCCATCACATCACTCTACTACGTCGCTCCCTGCTGCTTGGTCTTCCTCTCTGTGCCATGGA TCTTCGTTGAATACCCTGTTCTGAAAGAAACCTCGAGCTTCCATTTCGATTTCGTCATCTTCGGTACCAATTCGCTCTGC GCTTTTGCGTTGAATCTGGCGGTGTTTCTTCTGGTTGGGAAAACTTCTGCTCTGACGATGAATGTGGCTGGGGTTGTGAA GGATTGGCTGTTGATCGCGTTCTCTTGGTCTGTCATCAAGGATACTGTGACACCCATCAATTTGTTTGGGTATGGGCTTG CTTTTCTGGGTGTGGCGTATTACAATCATTCCAAGTTGCAGGCTATGAAGGCCAAGGAATCGCAGAAGAAAATTGCACAG GCTGATGATGAGGAATCAGGAAGGTTGCTTGAGAACAACAGAGATGGTGAAGGCAAGAGGAATGAGCAGCAGAATTGA
CDS sequence (LotjaGi1g1v0385000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACAATTGGCCATTCCCAATCTCCCTCACCATGATCCACATGTCCTTCTGCGCCTCCCTCGCCTTCTTCCTCGTCCG CGTCCTCCGCCTCGTCGAACCCGTCTCCATGTCTCGCGACGTCTACCTCTCCTCCATGCTCAAAGCCCTCATGCCCGTCG CTGTTTACTCCATCGGCGTCCTCCTCCGCAAAGAATCCTACAAAAACGACACCATGTGTAACATGCTCTCCATCTCCGCC GGCGTCGCCGTCGCCGCCTACGGCGAAGCCCGTTTCGATACATGGGGTGTCCTCCTCCAGCTCGGCGCCGTCGCGTTTGA AGCCACCAGGCTTGTCCTCATCCAAATCCTCCTCACCTCCAAAGGGATCTCGCTCAACCCCATCACATCACTCTACTACG TCGCTCCCTGCTGCTTGGTCTTCCTCTCTGTGCCATGGATCTTCGTTGAATACCCTGTTCTGAAAGAAACCTCGAGCTTC CATTTCGATTTCGTCATCTTCGGTACCAATTCGCTCTGCGCTTTTGCGTTGAATCTGGCGGTGTTTCTTCTGGTTGGGAA AACTTCTGCTCTGACGATGAATGTGGCTGGGGTTGTGAAGGATTGGCTGTTGATCGCGTTCTCTTGGTCTGTCATCAAGG ATACTGTGACACCCATCAATTTGTTTGGGTATGGGCTTGCTTTTCTGGGTGTGGCGTATTACAATCATTCCAAGTTGCAG GCTATGAAGGCCAAGGAATCGCAGAAGAAAATTGCACAGGCTGATGATGAGGAATCAGGAAGGTTGCTTGAGAACAACAG AGATGGTGAAGGCAAGAGGAATGAGCAGCAGAATTGA
Protein sequence (LotjaGi1g1v0385000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYNWPFPISLTMIHMSFCASLAFFLVRVLRLVEPVSMSRDVYLSSMLKALMPVAVYSIGVLLRKESYKNDTMCNMLSISA GVAVAAYGEARFDTWGVLLQLGAVAFEATRLVLIQILLTSKGISLNPITSLYYVAPCCLVFLSVPWIFVEYPVLKETSSF HFDFVIFGTNSLCAFALNLAVFLLVGKTSALTMNVAGVVKDWLLIAFSWSVIKDTVTPINLFGYGLAFLGVAYYNHSKLQ AMKAKESQKKIAQADDEESGRLLENNRDGEGKRNEQQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 46 | 46 | 1.3E-157 | ||
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 46 | 46 | 1.3E-157 | – | |
| Phobius | 6 | 29 | 24 | - | – | |
| TMHMM | 10 | 29 | 20 | - | – | |
| Pfam | 18 | 235 | 218 | 2.3E-15 | ||
| Phobius | 30 | 40 | 11 | - | – | |
| Phobius | 41 | 62 | 22 | - | – | |
| TMHMM | 41 | 63 | 23 | - | – | |
| PANTHER | 44 | 267 | 224 | 1.3E-157 | ||
| PANTHER | 44 | 267 | 224 | 1.3E-157 | – | |
| Phobius | 63 | 96 | 34 | - | – | |
| TMHMM | 96 | 118 | 23 | - | – | |
| Phobius | 97 | 118 | 22 | - | – | |
| Phobius | 119 | 129 | 11 | - | – | |
| Phobius | 130 | 148 | 19 | - | – | |
| TMHMM | 130 | 149 | 20 | - | – | |
| Phobius | 149 | 159 | 11 | - | – | |
| Phobius | 160 | 184 | 25 | - | – | |
| TMHMM | 164 | 186 | 23 | - | – | |
| Phobius | 185 | 190 | 6 | - | – | |
| Phobius | 191 | 212 | 22 | - | – | |
| TMHMM | 193 | 212 | 20 | - | – | |
| Phobius | 213 | 217 | 5 | - | – | |
| TMHMM | 216 | 235 | 20 | - | – | |
| Phobius | 218 | 235 | 18 | - | – | |
| Phobius | 236 | 278 | 43 | - | – | |
| MobiDBLite | 250 | 278 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0385000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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