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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0385600 |
| Transcript ID | LotjaGi1g1v0385600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT5G11280.1 tail fiber; Swiss-Prot: sp|O51769|SBCD_BORBU Nuclease SbcCD subunit D; TrEMBL-Plants: tr|I3T096|I3T096_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0385600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86921701..86923804) extracted from Lotus japonicus Gifu genome v1.2.
CCCTCCCTCTCCATGGCGACGACCTCCAAGACCACGGTTTCCAAGACCACGGTATCACCTTCTTCTTCATCATCGAAGAG TTGGACGAAGAATGTTTCATCAATTGCAGCTCGCATCTACTTCCTCCTCATCCTCTTCCAGATCCCTCTTTTCAGGTACT CTCATCGATTGTAAACTCGTTCTATCAATTTTCGTTTTCTTCTACTTCAGATTGGTGTTAGATGTGGAATTTAGGTTTGA AATTGTGGTTTGGTTTGGTTTGCTTGTACAGGGTGACTTGCAGATCTGGTGTGTGTACAAATCCTTTACATGTAACATCG TCACAGTTGATTGCGAGTGAGATCTTCCCTGTTCCTGTTGTCAAGGGCCTTCTGTACCCTGGTGCTGTTGTGCATGGCCT CATCCACAATATGAGTGTTCCAAGTTGGGGAAATTTGTTGGAGTCGTATAACTTGACCGCTGTCAAGAATGCTTCTGCAG TCACTGATCTTCAACGATTGGAGGTTTGATAATTTGATCTGAATCATGCACCTTCTGTTTTTTCACCATTGATGTCTCTT ATATTAGCATGTTTGGTTTCAGTTTCACAGTGAAATGGTTTAGAATTAATTCTATATAAAAGCTACCAGTGTGCATGATT GGAAATTTTTCTACAATTGATTTTGAAGCCAAAATCAGTTTCGGGGAAAAGCTACTTAAAAGAAGCTCATCTAAACATGC AGTAATCAGTTTCACACACTCCGATGCACATTTCATCTTAAGCTATAGTAATTGTTAGATTATGCATAGTAAATGACCGT TTTTACGTGATTCCGAATGACCTGTTAGCTTATGAGTAACAATAATGCCTCTTGGTACGAAAACGTAAGTTGCGAATAGT TTTCAAAGTAAAATGATTGGTTAGTAGTTCCTTAATTATAGGCAATTGAATGTGTTTTCTGTCAAATAGAAATATGTTTT GAAAACAAACTCTCATTCTTATCATTCGTTGAATTTTGTCCCGTAACAAATAGCATCACTCTATGAGTAAATGCATTATG GATTTTGTGCAAATTGATAAACCAATGGTTCACTATAGTGTGTTTGGATTCTCTGATAAGGAAAACTTTAAGACGGTTTA TTGAGTGTGTGTTTGTTTGAGTGGTGGCACAAAAGAGAATGCACTTCCCAATCAATGGTTGTGATGACTTATTTTACCCT ATAATGTGAGTCTCTCACTTTAGATGAGCCAAATTCACACTTCTATCCCAGAGCTACGATAGATTTGATTTTGGAACCTA ATTTGGTTTGTAAAAGCTAAACCAAACACTAGGAAAAGCTATGTTGTGTATCTTCAAGATTGACACGCGAGTATGTGGTT ATGCAAACACACTTTTATATTGGCTTAAAGTTGAGACTTGAGATCCGCTTCTTTTCCTGTGCTAAGAGGTTTTTTTCTCA TTTTTTGGAGTTATCTGCTCTTATCTGAGTTAAGCCTTTCAGTTCCATTGCACAGATCTTTTCTAATTCGAGCCTTAGTC GTGTCAAGGATTTTGTGTGGAATATTTACTTGAAATGGTCGGTGTCTATGCCAAGTTTAACAACTAGACAATTGAATACT GGAGATTTCTCATGAGGAAGGAAAAAAAGCCACGGACTAATGAGAATACTCTTCTGACAAATTAAAAGAGACATTAATTC CTTTAAGTCACATATATTTTGTGCTACATAATTATTCTTGCCTATTCTGCTCAATTAATGTCATTGTAGCACATGATACA GTTTCTGTTGATACTTCTCATCTAAATACACAACAATTTTTAACCAGGTTCTTGCGGGAAGCTACTTCGCAGTGGCAGGA GCACTTGTTGGTATTCTAAAACCCGGGAGAATGAGCATGTTCGGGTCACTTCTGATAATTTGGGGACTGGTCAAAGAAGG CATTCTAGGAAAGCCTGCAAATACTGATCCTTCAAAAGCTGTCTATGTCTACCCGACAATGGTGCTCGCCTTAATATGTG CCTTCTCATCTGTAAAATACGATGTGAAGAAGGCTGTGAGACCAGCCCCAATCCGGTCCACTGCTAAACCTCTTAAGAGC TCATCCAAGTCTAAGCTCAAATGA
CDS sequence (LotjaGi1g1v0385600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACGACCTCCAAGACCACGGTTTCCAAGACCACGGTATCACCTTCTTCTTCATCATCGAAGAGTTGGACGAAGAA TGTTTCATCAATTGCAGCTCGCATCTACTTCCTCCTCATCCTCTTCCAGATCCCTCTTTTCAGGGTGACTTGCAGATCTG GTGTGTGTACAAATCCTTTACATGTAACATCGTCACAGTTGATTGCGAGTGAGATCTTCCCTGTTCCTGTTGTCAAGGGC CTTCTGTACCCTGGTGCTGTTGTGCATGGCCTCATCCACAATATGAGTGTTCCAAGTTGGGGAAATTTGTTGGAGTCGTA TAACTTGACCGCTGTCAAGAATGCTTCTGCAGTCACTGATCTTCAACGATTGGAGGTTCTTGCGGGAAGCTACTTCGCAG TGGCAGGAGCACTTGTTGGTATTCTAAAACCCGGGAGAATGAGCATGTTCGGGTCACTTCTGATAATTTGGGGACTGGTC AAAGAAGGCATTCTAGGAAAGCCTGCAAATACTGATCCTTCAAAAGCTGTCTATGTCTACCCGACAATGGTGCTCGCCTT AATATGTGCCTTCTCATCTGTAAAATACGATGTGAAGAAGGCTGTGAGACCAGCCCCAATCCGGTCCACTGCTAAACCTC TTAAGAGCTCATCCAAGTCTAAGCTCAAATGA
Protein sequence (LotjaGi1g1v0385600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATTSKTTVSKTTVSPSSSSSKSWTKNVSSIAARIYFLLILFQIPLFRVTCRSGVCTNPLHVTSSQLIASEIFPVPVVKG LLYPGAVVHGLIHNMSVPSWGNLLESYNLTAVKNASAVTDLQRLEVLAGSYFAVAGALVGILKPGRMSMFGSLLIIWGLV KEGILGKPANTDPSKAVYVYPTMVLALICAFSSVKYDVKKAVRPAPIRSTAKPLKSSSKSKLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 30 | 30 | - | – | |
| PANTHER | 15 | 223 | 209 | 1.4E-112 | – | |
| PANTHER | 15 | 223 | 209 | 1.4E-112 | – | |
| Phobius | 31 | 51 | 21 | - | – | |
| Phobius | 52 | 130 | 79 | - | – | |
| TMHMM | 124 | 142 | 19 | - | – | |
| Phobius | 131 | 157 | 27 | - | – | |
| Phobius | 158 | 176 | 19 | - | – | |
| TMHMM | 177 | 194 | 18 | - | – | |
| Phobius | 177 | 194 | 18 | - | – | |
| Phobius | 195 | 223 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0385600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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