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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0387400 |
| Transcript ID | LotjaGi1g1v0387400.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-directed RNA polymerase subunit beta; TAIR: AT2G25605.1 DNA-directed RNA polymerase subunit beta; Swiss-Prot: sp|Q2KBU1|AROA_RHIEC 3-phosphoshikimate 1-carboxyvinyltransferase; TrEMBL-Plants: tr|A0A151R209|A0A151R209_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0387400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:87073570..87077859) extracted from Lotus japonicus Gifu genome v1.2.
GCAACAAGCACGACATAAAACCAAAGGAGGTGGTTTGGGGGCGGTGCAGGAAATGCCCATTTTTCTTGGTACCTTCTCAT TCATCAATCTTACAATTTATAGCTAGGATTGAACATTTAGACTGAAAAGAGCAATATAAGTGAAACGTTATCCCCACTAC TAGAAGTCAAAATCAACTTCCAAAACAAGCATGTCAATTGAAGTGAGATCATTATAGAATTTAACCTTGAACTTTTTAAT ACTAAAATAATCACAATTAAGCTTTCCTTTGTCAAATTGAGCCGTGAACAAGTGTTCTTCCTTTGTGAATATGAAGGGTA CTATGAACATGTAGTTAAACAATTTTCATTCCTGATTTCCATACCACTTTTTTTGGTGTACAAACATTCATTTTATTACG ATTTTAGTCCGTCACATAGTAGAAAGTTTTAAAAACTTAATTTATATGGCGGTCTAAAATCACATCAAACGCGCGATTTT GAAATATGCATATACTATAGCGTGGTTCACCTGACATTTTTATATCCACTAATATCATTCACGTAACTTAATGGTAGATT TGTCATTAGCAAAACACAGAAAACTCACGCGCGAAGAGAGACCACAGAAAATAACCATTGTCATCTTCACCATTGACAAT TCCTTCTTCTTCTTCTGATACACGAAACTCACGCAGAAACCCATCACTTCAAACTTCAATCCATCGAAGACGATGTCGTT TGGTTCGTCTCTGTTGTCTCCTCCGCATGCTTTCTGGTTATCATTCTCAAAATCAACCACCTCTCGCTTCAAAGCCGCTG CTTCAAACGTTCCCGATTTTCTCTCTGCAGACTGGTTTGTTACTTTGTTTCATGCTCCAGAATCAATTATTGAGTAAAAG TAGCTTAAATTTTGTGGAAAACTCATTTACTTTTCAATACTGCAGGTTTGAATCTCGCAAGAAAAGACCGTTCGGTCCTA GATTAGATGTAAGCAAGCACCACCACATGCCAAATCTTGATTGACTACTGTTTGTTTTCTTCTTTTGGGGTTAAATCTTT GCTATAGTTTAGTGCAGAAGATGCTGTTCATTACCAGCTTGAAGCCTTGAAGTATAATGATCAGCCTCGTCAAGATTATG GAATTGAGGTTATGTACAGGGTAATCAGTTAACCATCTTCTGATAATAATCTCTCTCAATTTCTCAATTTTAATTTCTGT TTGCTATGCCTGGTAAGTGTTACTATTTACTAACCCTATCCTTTTTTCATAGTTTGCTGGATTTGATCCATTTGAAAGAT CAACCTATTTTGGGCCATTCTTTGATCTGGGTCAGGTTAGTACTGTTCAAATTTTTCATTTCTCTATATATATTGATAGA TTTTGACCTCGTCTGGAGGAGCTTATTTGAGCTTATCTTATAACATAAGCTCTTATGCAAGGGTCTGAGGGAGCTTACGT AAATAGCTTATGACCTACCCATAAGCTGTTTTGAGCTTATTTCATAAGCTATTTAGATTATCTTATGAATAAGAGTTATG CTTACCTATGGCTTATTTTTCAGTTTATTTCTATAAATTTCTCATACTAGCTTATGAATGAGTGTTTATGCGTTAAATCC TTATGGCCCGTTTGGTGGTCAGGATAGAATATGATAGGATATGATATGTGAACATGATATCAACAGGATAGGATAAGAGC AGGATAGACTCTTATCATATCCTGTGTTTGAGGTGCACATGATAAGGACAGGATATGACAAGGAAAAATGCATCAGATTT ATATTTGAATAAAAAATACATTTAAAATTGATCATTCTATTAAATTTAATTTATTTACATTTTCATGAATCAGTCTATAT TTTAAAATAAATAAAATTAATTTAAATTTTATTAATTAGCCTATTTTATTGTTTTGAAGATGCCCTATATTTTAAATAAA ACTATGCAGTTAACCGATTGGTTTTCACTTAGTTGTGACACGTGATAATTAACAATAAAAGTTAATTAAATTAAGAATAT TATTATTTCAAAAGTACTTTATATTTGAATTATAAATTATTATATAAGTAGATAAGTAGTTTTAAATAATAGGAGATAAA ATAAAAAATTAATCTATTACTATTAAAAAAATCAATATTTGTAATCAATGTTTTTCACTTAGTTGTGACACGTGATAAAC AATAAAAATTAACTAAATTAAAAATATTATTATTTCAAAAATACTTTATATTTAAATTATTATATAAGTAGATAAATAAT TTTTAAATAATAGGAGATGAATTTTTTTTTGAAAGATAGGAGATGAAAATATTGAATTAGTCTATTATTATTAATAAATC AATATTTGTAAGTGAGTAGTCTATTTTACTATTTATGAATAATAATTTTATTTATTTTTTATTTTAGTTAAATTAATATT TTTATATTTATTAATTAATATTATTATAAATTATAAATTATATAATATTAAAATAAATTAATTTGGAGTTAGGATACCGA AAGAAAATATATAACTGGTATCATATCCTGCTCTATCCTACTCCCCCTCAGGATAACTTTTACACATGATGGATAGGAGA CAAGATAGTGTTATCATATCCTGCTGACGCAACAAACAACAGATAACAACAGGATATGATTATTATCCTGTCCTATCCTA TCCTGTCCTGGTCACCAAACGGGCCCTTATTGTCATAAGCGCTTAATTAAATTGTTTACCCTAACACACTCTTTGCATAT GTTGATTGATGGTGAACCGTGGTACACCTTTTCGTGTGCAGTTTGAAAGGTTCAGGCGTATTTTTCACCATTCTACTTAC CGAGTCTTACTGGGTCACAAGGAAAGAAAGATTATGAGCAGTTTGTTTGTAGAGGAGGTAAAATTCTTAAAGTGACATTA AGTACATTTGGCACATTTCATTTACGAGTTTATGTGTACTTATGAATTTGTGTAATTGCCATGCCAATGTTTTGAGCTTC TAATACCTCGTGTTTTTATCCTCCTTCGTTCTTTCTTATTTTTCATATTTTACTCTGTTCAAACTTCAAACAGAACAAAT ATATGCAGCGGGTTTGGATTCGTGGAAGTCGACCAGAGGAAGAGGAAATATTTCAACTTACAATGACTCAGGTTTGATCA TGATTCCTGCTCTTATATAGTCATATTATATAGCTTTTTTCTTTAATTTTGTGTACTTTTGCATTAATATAAATTACAGT ATCACAATACTTGGATAAATAACAAAACTAGTATTTAGATAAACAACAGCATTTTACCTTGTTTACATGATTTGGCTCCT CTGAGGTTTGAAGTTTGAAGTTTAAACACAAAGCTGTTAGAAGCCTTTGGTATGACTTTTTTTATCTGTCCACAGAAAAT GGGTTATACTTTATATGACCCAATGCCTGAGATATTTGCTATATGCTGCAGTCTAGAGTAGACTGTAGACTATCCAATGC ATTATGTGCATGTTTTGAATTCGGATGCATGCCTGGGAATAGTTCTGAATTGTGCTTTCATCAAACTGATTTTGCATGTT AACAGGTAGTTTTGGGAATTTGTTTAAGTGAATTGCTGCATGTGTAAAGTAAGCAATTACAATTATTGACTAAGAAATCA AATGAGATTTAAGGAATTTCATGATTTGGCTTATAAGTGCAAATATATAATCACAATCTTAACTTTCAATAGCGGTGATT ATTTACTTTCTCCTCAGAGGAGCCAAATCCTTAACGTTGATAGTCCCTTTCTTAATTCAATGATAAATGATAATCTAATC TGTACTATTTTTTCTGACCCATGCCTTTATCTTCCCTATTATCTGACTTATCAAGTCAAGTATCTATCTCTTGTTGGTCA CTGGCAGAGGGTTGGTGGTTGCTGGGATGGTTATTGGTTGACAGAGTCTTTGCTTCATGATAGAGATACATTTGCTGGTG GTTTGGCATATTAGAGAAAATCCAATGCAGTAATCAGTTTCATCTTTCATGAGGTTCCATTATCAAAGCATGAAATGATC TGCTATTACAAACCTAATCTGTAAAATTTGTACATATGTAAAAAGTTCAGGTGTTATTATATGTTAAATAGGAATGTGAT TAGTCTTCACTAATCAAATACGAACACTCTTGCACAGTTTACTGAAAATGTTGCAGGACCTGGCATACTTTTAGTGCTAT ACTCAAATGTTTAAAAGAGATTTCTATCAATATAGCATGATCAAGAGTCAAGACACACCATAAAATGGAGGAAAGTAGTA AAAATAAATAATGAAAATGAGAGAAGTTAATATGAGGGATGTAAGTAAAG
CDS sequence (LotjaGi1g1v0387400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTTTGGTTCGTCTCTGTTGTCTCCTCCGCATGCTTTCTGGTTATCATTCTCAAAATCAACCACCTCTCGCTTCAA AGCCGCTGCTTCAAACGTTCCCGATTTTCTCTCTGCAGACTGGTTTGAATCTCGCAAGAAAAGACCGTTCGGTCCTAGAT TAGATTTTAGTGCAGAAGATGCTGTTCATTACCAGCTTGAAGCCTTGAAGTATAATGATCAGCCTCGTCAAGATTATGGA ATTGAGGTTATGTACAGGTTTGCTGGATTTGATCCATTTGAAAGATCAACCTATTTTGGGCCATTCTTTGATCTGGGTCA GTTTGAAAGGTTCAGGCGTATTTTTCACCATTCTACTTACCGAGTCTTACTGGGTCACAAGGAAAGAAAGATTATGAGCA GTTTGTTTGTAGAGGAGAACAAATATATGCAGCGGGTTTGGATTCGTGGAAGTCGACCAGAGGAAGAGGAAATATTTCAA CTTACAATGACTCAGAGGGTTGGTGGTTGCTGGGATGGTTATTGGTTGACAGAGTCTTTGCTTCATGATAGAGATACATT TGCTGGTGGTTTGGCATATTAG
Protein sequence (LotjaGi1g1v0387400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFGSSLLSPPHAFWLSFSKSTTSRFKAAASNVPDFLSADWFESRKKRPFGPRLDFSAEDAVHYQLEALKYNDQPRQDYG IEVMYRFAGFDPFERSTYFGPFFDLGQFERFRRIFHHSTYRVLLGHKERKIMSSLFVEENKYMQRVWIRGSRPEEEEIFQ LTMTQRVGGCWDGYWLTESLLHDRDTFAGGLAY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 20 | 193 | 174 | 2.5E-98 | – | |
| PANTHER | 20 | 193 | 174 | 2.5E-98 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0387400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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