Transcript — View — Lotus Base

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LotjaGi1g1v0390700.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0390700
Transcript ID	LotjaGi1g1v0390700.1
Lotus japonicus genome version	Gifu v1.2
Description	DUF581 family protein; TAIR: AT5G11460.1 hypothetical protein (DUF581); Swiss-Prot: sp\|Q8LGS1\|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr\|A0A0R0K5A5\|A0A0R0K5A5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0390700
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:87430742..87433782) extracted from Lotus japonicus Gifu genome v1.2.

GGTAACTCTTCACCTCATCAGTGGATTACAATAATACTAATCCAGTTGGTTCTATTGCCAATTTTGTGACAAAGAAGAAG CACCGTTTTACAATGAACCATTAAGCAAAAATGGGGAAAGTACAAAAAACCAAAACAGTTCATAAACAATTCTGTGGGCA GATACAGTGTTGTTTGCAGTACAGTACATTTATCTAGAGAGAGAAAGAGGGAGAGAGTGAGAGGAGTATATCAGAAGCTC ACTCTAGCTTCCCTGATTTTGAGGCATGCAAGAGAGAGAAGAAGAAGAGAGTTTGGATTATTCGTACTGCACAAGTTTCA GACATCTACTCATTTATATTGCTGCATTTGGGAGACTTCTCCACAGCACTATCTCTGTGAAGTGGAATCCCAGGTGGGTT CTTCTTCTTCCTCCTCCTCCTCAAATCATCATCATTCTTATACATAAAAAAATGTTTCTTTCACTCTCTTGTTTTTCATG ATTCATCTCTGTGTATGTGTGTTTTCATTTTAGTTTTGTTAGTGTGGGGCTTTCTCTGAGCTTGTCATCAACCATTTGGT AATCAATCATTCATCTTTCAATGGCATAATAAAAAAAAGCTACCCCCCCCCCCTCACCTTTTGCATTTGGGGGTTAACAC ACTGAAATGAATAACTTCTGTTTTTTTTTTCAGCTTCTTCTTCATTTTTTCTTTTCTGTGTCTCTTCAGTGGGATTTGAT TGTCACCAAGTTTCAATTTTTTTCTCAGAAGTAATTAATGATGCAGCATTGTTTTGTCAGCTTCTTCATTTTTTTTCTGG GTCTCTGGTGAATCTTGCAATCACAGTGGCATTTAATTTCACCAGGGTGATATGCATTCAAAGTTTCAATCTTTTTCTCA GAAGTAACTGTTCATGCAGCATTGTTTGTTGATTCAAATGAATTGATAACATGTTTGGATCAGCTTTTTTTTTTCCTCTC AGAATCAATTCTGGCAACCAGTTCAAAAGCTCCTCCCCAGAATTGATTAAATTTTAGAATGATTTCACAAATGCTATGAT TATTCATGTTGATTTGTGTTGTGTTGTTTAATTTATGCAAGTAAGTCTTGGTTGTTGTTGTTGTTGTGAGCAGGTGTTTG TTTGAGACAATGCTGTGGAAGAGGAACATGTCTATCAGGAAGGATCAGAATCAAAGCTCAATCTCCAATGTGGGTCTGTA TCCTCAACGCTTGTTGGGTTCTGATTCAGTTAGGAGCCCCACTTCTCCACTGGATGCTAAAGTTATTCCAAATGCTGACA ACCCAAGATCATCATCATTAACAACAGCCCAAAAGAGGAGCTGGGATTGCAGCAAAGTTGGTCTAAGCATTGTTGAATCT TTGGAGGACAGAGCTAGAAATTGTGGGAAGTTTCTTCTCTCATCACCAGAGAGGAAGAAGATTAGCCTCAGTCCCCAAAT GATGGTCAAAAAAATCTGTGTGAATCCTGCTGAGGAAGAAGAATCTAAGTCTTTGCCTAAAGAGACTTCTTGCAAGGTTC CTGAGTCCAAAAGTGAACCTGTTATCCACAACAAGGGTGAATCCAATGTTGTTTTTGAGATTGGAGACACTGCTCAAGAG CTTGGACTATTTGTGAGAAGCAGGTCCTGTCCATTGAATTCCTACAAAACCTTCCCTGGTTTAACCAGTTCCAAAACTGA TTCAACCATTGATAGTTTTGGTTTGAAAGATATGAGTTCTTCTCCTCATTTTATTGGAGGAAGCTCAAGCCATGCTTTCC CACCAGCTGCAGAGTTGAACTCAAACACTGCTTCAATGTGCTCCTCAAATGAGTATCTCATGTCTCTATCTCCTAGTGAG ATTGAACTCTCTGAGGACTACACATGTGTGATCACACATGGCCCCAATCCCAAAATAACTCACATTTTTGGTGATTGCAT CTTGGAGACTAATGCTAAAGTGATTAAAAACTATTTCAAGATTGAAGGGATGGACAAGGGAATGAACATGTTGGGTGGTA ACATGATGCCACCGCCACAGGCTCCAAATCAATATTCCTCAAGTGAGTACTTCCTGAACTTCTGCCACCACTGCAACAAG AAGCTGGACAAGAAAGAAGATATTTACATTTATGGGTGAGTTTAGTACTTTAGTTTCCACTGTTTCATCACTTCTATTCT GACTTACATATAACTTGTTAGGATCAATTTTTTTTCTTTTCTTCAGAATCAATTCTGAAAACAGTAGCTATTCATAGAAG TTTCTCGGCTTCGGGATAAGAATCAATTCTGAAACCGAGAAAATACTTACAAAAACTTCTCGCTAGAATTGATCCTGGCT CTAGAATCAATAGTCAATTCTGAAATCAAGAAGCTACTTTCAGAAGCTTCTCTCCAGAATTGGTTCTGGCAGAAGGATTA ATTCCAAACATGCTAATAGGTTTCTTTGATGGATTGATTTTATTTAATTGGCTTCTTTTGATATCTTGCAGGGGTGACAA AGCATTTTGCAGTTTAGAATGCAGAGAAGTTGAGATCAAGTTTAATGAGGAGCTTGAGAAATCAAAAACTGAATCTGAAA ACTCTCCAAAGGCAGAATTTGGAGTGAACCTTTTTGAACCAACCATGTAGAGGTTTATCAACCACATGCAGATGGCACAT TGAGAAGGGTAGATGCAACTGATCATCTTTTCAACAACAATGAGCTGTGGTTTATGTGCATCTGGTAGCGGCCATGGATG ATCATTTTGTATATCGTTGTGTTTGCCTAGTCTTGGTGTTTTCAGCTGCATTGTGGATTATGGTTCTCAATTAAGCTAGT TTTGTTTAAGTTTCATCATAGCATGTAGAAACTAAAAGGTTGAAGGTTATTTTTGTGGCCTCAACTGCTGAATTTTCATT TTTCTTTGCAATATCTCGCTATATTATGTCAGTGTAAACAAAACTGAAAAATCAAAACAAAGTTTTTTTGTCTTTTTGAA ATATTGTGCCATCGTAATTTTATACAACTTTATTGTCTTTTTCCCATGGATTCCTGGAAAAATTGGAGAACTTGTTGGTG G

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0390700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAAGAGAGAGAAGAAGAAGAGAGTTTGGATTATTCGTACTGCACAAGTTTCAGACATCTACTCATTTATATTGCTGC ATTTGGGAGACTTCTCCACAGCACTATCTCTGTGAAGTGGAATCCCAGGTGTTTGTTTGAGACAATGCTGTGGAAGAGGA ACATGTCTATCAGGAAGGATCAGAATCAAAGCTCAATCTCCAATGTGGGTCTGTATCCTCAACGCTTGTTGGGTTCTGAT TCAGTTAGGAGCCCCACTTCTCCACTGGATGCTAAAGTTATTCCAAATGCTGACAACCCAAGATCATCATCATTAACAAC AGCCCAAAAGAGGAGCTGGGATTGCAGCAAAGTTGGTCTAAGCATTGTTGAATCTTTGGAGGACAGAGCTAGAAATTGTG GGAAGTTTCTTCTCTCATCACCAGAGAGGAAGAAGATTAGCCTCAGTCCCCAAATGATGGTCAAAAAAATCTGTGTGAAT CCTGCTGAGGAAGAAGAATCTAAGTCTTTGCCTAAAGAGACTTCTTGCAAGGTTCCTGAGTCCAAAAGTGAACCTGTTAT CCACAACAAGGGTGAATCCAATGTTGTTTTTGAGATTGGAGACACTGCTCAAGAGCTTGGACTATTTGTGAGAAGCAGGT CCTGTCCATTGAATTCCTACAAAACCTTCCCTGGTTTAACCAGTTCCAAAACTGATTCAACCATTGATAGTTTTGGTTTG AAAGATATGAGTTCTTCTCCTCATTTTATTGGAGGAAGCTCAAGCCATGCTTTCCCACCAGCTGCAGAGTTGAACTCAAA CACTGCTTCAATGTGCTCCTCAAATGAGTATCTCATGTCTCTATCTCCTAGTGAGATTGAACTCTCTGAGGACTACACAT GTGTGATCACACATGGCCCCAATCCCAAAATAACTCACATTTTTGGTGATTGCATCTTGGAGACTAATGCTAAAGTGATT AAAAACTATTTCAAGATTGAAGGGATGGACAAGGGAATGAACATGTTGGGTGGTAACATGATGCCACCGCCACAGGCTCC AAATCAATATTCCTCAAGTGAGTACTTCCTGAACTTCTGCCACCACTGCAACAAGAAGCTGGACAAGAAAGAAGATATTT ACATTTATGGGGGTGACAAAGCATTTTGCAGTTTAGAATGCAGAGAAGTTGAGATCAAGTTTAATGAGGAGCTTGAGAAA TCAAAAACTGAATCTGAAAACTCTCCAAAGGCAGAATTTGGAGTGAACCTTTTTGAACCAACCATGTAG

Download CDS Sequence

Protein sequence (LotjaGi1g1v0390700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQEREEEESLDYSYCTSFRHLLIYIAAFGRLLHSTISVKWNPRCLFETMLWKRNMSIRKDQNQSSISNVGLYPQRLLGSD SVRSPTSPLDAKVIPNADNPRSSSLTTAQKRSWDCSKVGLSIVESLEDRARNCGKFLLSSPERKKISLSPQMMVKKICVN PAEEEESKSLPKETSCKVPESKSEPVIHNKGESNVVFEIGDTAQELGLFVRSRSCPLNSYKTFPGLTSSKTDSTIDSFGL KDMSSSPHFIGGSSSHAFPPAAELNSNTASMCSSNEYLMSLSPSEIELSEDYTCVITHGPNPKITHIFGDCILETNAKVI KNYFKIEGMDKGMNMLGGNMMPPPQAPNQYSSSEYFLNFCHHCNKKLDKKEDIYIYGGDKAFCSLECREVEIKFNEELEK SKTESENSPKAEFGVNLFEPTM

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR46868:SF7 View details on PTHR46868:SF7 Search for proteins/transripts with this domain View external data on PTHR46868:SF7	69	420	352	3.6E-122	–
PANTHER	PTHR46868 View details on PTHR46868 Search for proteins/transripts with this domain View external data on PTHR46868	69	420	352	3.6E-122	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	79	108	30	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	163	185	23	-	–
Pfam	PF04570 View details on PF04570 Search for proteins/transripts with this domain View external data on PF04570	350	397	48	8.1E-19	IPR007650 Show description in modal box View details on IPR007650 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51795 View details on PS51795 Search for proteins/transripts with this domain View external data on PS51795	355	399	45	19.645	IPR007650 Show description in modal box View details on IPR007650 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0390700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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