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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR007650
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 39 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.494s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0072979.1
n.a. Uncharacterized protein TCM_015808 [Theobroma cacao] gi|508776867|gb|EOY24123.1| chr0 27236569 27237821 -
2 domain predictions
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Lj0g3v0103069.1
n.a. Senescence-associated protein SAG102 [Medicago truncatula] gi|357440677|ref|XP_003590616.1| chr0 43916864 43918727 -
2 domain predictions
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Lj0g3v0209609.1
n.a. Uncharacterized protein TCM_034955 [Theobroma cacao] gi|508724176|gb|EOY16073.1| chr0 105135788 105150550 -
2 domain predictions
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Lj0g3v0209619.1
n.a. Uncharacterized protein TCM_034955 [Theobroma cacao] gi|508724176|gb|EOY16073.1| chr0 105149237 105150550 -
2 domain predictions
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Lj0g3v0282489.1
n.a. Uncharacterized protein TCM_037491 [Theobroma cacao] gi|508782952|gb|EOY30208.1| chr0 146455022 146456400 +
2 domain predictions
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Lj0g3v0315579.1
n.a. Uncharacterized protein TCM_034955 [Theobroma cacao] gi|508724176|gb|EOY16073.1| chr0 164716866 164718402 -
2 domain predictions
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Lj1g3v0099440.1
n.a. Uncharacterized protein isoform 3 [Theobroma cacao] gi|508702819|gb|EOX94715.1| chr1 935341 937521 -
2 domain predictions
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Lj1g3v1932620.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508702817|gb|EOX94713.1| chr1 23092693 23095560 -
2 domain predictions
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Lj1g3v3559200.1
n.a. Uncharacterized protein TCM_015808 [Theobroma cacao] gi|508776867|gb|EOY24123.1| chr1 40927378 40928218 +
2 domain predictions
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Lj2g3v1292120.1
n.a. Uncharacterized protein TCM_015808 [Theobroma cacao] gi|508776867|gb|EOY24123.1| chr2 20665192 20665957 -
2 domain predictions
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Lj3g3v0140690.1
n.a. Uncharacterized protein isoform 3 [Theobroma cacao] gi|508702819|gb|EOX94715.1| chr3 1154853 1158032 -
2 domain predictions
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Lj3g3v0140690.2
n.a. Uncharacterized protein isoform 3 [Theobroma cacao] gi|508702819|gb|EOX94715.1| chr3 1154853 1157925 -
2 domain predictions
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Lj3g3v2575810.1
n.a. Uncharacterized protein TCM_029239 [Theobroma cacao] gi|508780123|gb|EOY27379.1| chr3 31356985 31358114 +
2 domain predictions
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Lj4g3v2309300.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508714663|gb|EOY06560.1| chr4 32130883 32131946 +
2 domain predictions
 –
Lj5g3v0552230.1
n.a. Senescence-associated protein SAG102 [Medicago truncatula] gi|357440677|ref|XP_003590616.1| chr5 6584598 6587195 +
2 domain predictions
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Lj5g3v2045770.1
n.a. Uncharacterized protein isoform 3 [Theobroma cacao] gi|508702819|gb|EOX94715.1| chr5 29327113 29329625 +
2 domain predictions
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Lj6g3v1175130.1
n.a. Uncharacterized protein TCM_037491 [Theobroma cacao] gi|508782952|gb|EOY30208.1| chr6 14303490 14304617 +
2 domain predictions
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Lj6g3v1466060.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508714663|gb|EOY06560.1| chr6 17220131 17221264 -
2 domain predictions
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LotjaGi1g1v0149000_LC.1
n.a. senescence-associated family protein, putative (DUF581); TAIR: AT1G78020.1 senescence-associated family protein, putative (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|I3SEZ2|I3SEZ2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0149000_LC LjG1.1_chr1 25502319 25519248 +
3 domain predictions
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LotjaGi1g1v0246200.1
n.a. senescence-associated family protein, putative (DUF581); TAIR: AT1G78020.1 senescence-associated family protein, putative (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|I3SKN3|I3SKN3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0246200 LjG1.1_chr1 59019499 59025084 +
3 domain predictions
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LotjaGi1g1v0390700.1
n.a. DUF581 family protein; TAIR: AT5G11460.1 hypothetical protein (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|A0A0R0K5A5|A0A0R0K5A5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0390700 LjG1.1_chr1 87430742 87433782 -
3 domain predictions
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LotjaGi1g1v0717200.1
n.a. senescence-associated-like protein (DUF581); TAIR: AT3G63210.1 mediator of aba-regulated dormancy protein (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|A0A0S3RY04|A0A0S3RY04_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0717200 LjG1.1_chr1 128544662 128548005 +
3 domain predictions
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LotjaGi1g1v0717200.2
n.a. senescence-associated-like protein (DUF581); TAIR: AT3G63210.1 mediator of aba-regulated dormancy protein (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|A0A0S3RY04|A0A0S3RY04_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0717200 LjG1.1_chr1 128544890 128547492 +
3 domain predictions
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LotjaGi2g1v0417500.1
n.a. senescence-associated family protein (DUF581); TAIR: AT5G47060.1 hypothetical protein (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|I3T1V8|I3T1V8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0417500 LjG1.1_chr2 91600340 91602258 -
3 domain predictions
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LotjaGi3g1v0016100.1
n.a. Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 2; TAIR: AT5G11460.1 hypothetical protein (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|K7M3V3|K7M3V3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0016100 LjG1.1_chr3 1689341 1692616 -
3 domain predictions
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LotjaGi3g1v0016100.2
n.a. Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 2; TAIR: AT5G11460.1 hypothetical protein (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|K7M3V3|K7M3V3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0016100 LjG1.1_chr3 1689342 1692645 -
3 domain predictions
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LotjaGi3g1v0016100.3
n.a. Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 2; TAIR: AT5G11460.1 hypothetical protein (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|K7M3V3|K7M3V3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0016100 LjG1.1_chr3 1689364 1692539 -
3 domain predictions
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LotjaGi3g1v0071100.1
n.a. senescence-associated family protein (DUF581); TAIR: AT2G44670.1 senescence-associated family protein (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|I3SL94|I3SL94_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0071100 LjG1.1_chr3 7703773 7706062 -
3 domain predictions
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LotjaGi3g1v0409000.1
n.a. DUF581 family protein; TAIR: AT1G53885.1 linoleate 9S-lipoxygenase-4 protein, putative (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|A0A151QTP9|A0A151QTP9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0409000 LjG1.1_chr3 81247701 81249658 +
3 domain predictions
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LotjaGi4g1v0192000.1
n.a. senescence-associated family protein (DUF581); TAIR: AT5G47060.1 hypothetical protein (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|I3T8J9|I3T8J9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0192000 LjG1.1_chr4 43901534 43903346 -
3 domain predictions
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LotjaGi4g1v0322400.1
n.a. DUF581 family protein; TAIR: AT5G20700.1 senescence-associated family protein, putative (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|I3SYU7|I3SYU7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0322400 LjG1.1_chr4 70074164 70076740 +
3 domain predictions
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LotjaGi4g1v0339000.1
n.a. senescence-associated family protein, putative (DUF581); TAIR: AT5G49120.1 DUF581 family protein, putative (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|I1MRK2|I1MRK2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0339000 LjG1.1_chr4 71906564 71908564 +
3 domain predictions
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LotjaGi5g1v0063500.1
n.a. DUF581 family protein; TAIR: AT2G25690.1 DUF581 family protein, putative (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|K7M6H9|K7M6H9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0063500 LjG1.1_chr5 10677363 10680656 +
3 domain predictions
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LotjaGi5g1v0169000.1
n.a. senescence-associated family protein (DUF581); TAIR: AT3G22550.1 NAD(P)H-quinone oxidoreductase subunit, putative (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|A0A0S3RY04|A0A0S3RY04_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0169000 LjG1.1_chr5 43186699 43189205 -
3 domain predictions
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LotjaGi5g1v0169000.2
n.a. senescence-associated family protein (DUF581); TAIR: AT3G22550.1 NAD(P)H-quinone oxidoreductase subunit, putative (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|A0A0S3RY04|A0A0S3RY04_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0169000 LjG1.1_chr5 43187042 43189069 -
3 domain predictions
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LotjaGi5g1v0312600.1
n.a. senescence-associated family protein (DUF581); TAIR: AT3G22550.1 NAD(P)H-quinone oxidoreductase subunit, putative (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|V7BCH2|V7BCH2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0312600 LjG1.1_chr5 63061641 63066331 +
3 domain predictions
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LotjaGi5g1v0312600.2
n.a. senescence-associated family protein (DUF581); TAIR: AT3G22550.1 NAD(P)H-quinone oxidoreductase subunit, putative (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|V7BCH2|V7BCH2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0312600 LjG1.1_chr5 63062812 63065440 +
3 domain predictions
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LotjaGi6g1v0222300.1
n.a. DUF581 family protein; TAIR: AT1G74940.1 cyclin-dependent kinase, putative (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|I3S700|I3S700_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0222300 LjG1.1_chr6 52699581 52701200 +
3 domain predictions
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LotjaGi6g1v0251600.1
n.a. senescence-associated family protein (DUF581); TAIR: AT5G49120.1 DUF581 family protein, putative (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|I3STR5|I3STR5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0251600 LjG1.1_chr6 56366351 56367942 -
3 domain predictions
 –