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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0396400 |
| Transcript ID | LotjaGi1g1v0396400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein; TAIR: AT1G17370.1 oligouridylate binding protein 1B; Swiss-Prot: sp|Q9M427|UBP1_NICPL Oligouridylate-binding protein 1; TrEMBL-Plants: tr|A0A151R3U3|A0A151R3U3_CAJCA Nucleolysin TIAR; Found in the gene: LotjaGi1g1v0396400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:88239020..88246923) extracted from Lotus japonicus Gifu genome v1.2.
ATGCAACAGAGGCTGAAGTTGCAGCAACAACAACAACAAGCCCTCATGCAGCAAGCTTTGCTTCAGCAGCAGCAGATGTA CCACCCTGGCATGCTCGCCGCTGCCATGTCTCAGGTCAACCTTTCAGAATCATCACTTTTTTCTCGCGTTCTTCTATTTC CTGTAAACTAAGAAATTAGGGCACACGAATGTACGGACAATTTTTAACAATTCATGTAACTAGTTTGCACTGATCTATTC TATTGTATTGTTGTCATTGCAACTATTTTGATTCTGATGATGCCTGCTTTTACTCGTTTATGATTGTTGTTGTTGTTGTT GCAGTTATCTCTTCTAATGGTTAATTTGATATAATTGTTGCTTGTATTGTTGAATGGCGTGTTATTTGTAGTATTTGTTT TGGATTAAGTAGGGATGCGTTTTGGCGGCCTTGATTGAAAGAGCAAGAAAGTAAATTTTGAACAAACTTTACATTCTCTC TCGAAAGTCAAAGTACATTTATTTCTCATTGTAGAGGAGACGAATTCATTTGTTGGATTTGCAATTATTTTTATCCAATT TTTTAGGTATTTGATGTATCAATGGATAGCAGTTTTTTCGAAACTTCTTTAAGCAGTTTGAGTTTATTAAAATATGTCAA GAATGTTTCACCTATAGACACAAAAAGCAACAAATATTTGTTTGATATGAGATAGTATTGTTTTACTCAATTGATTGATT TACCCTTTTAGTCGATATTTTGGTTTGTTAACTAAGAGTCATATAAGAAACAGTTCATTCCGTTACTAATAATAATAGAG TTTAAATTCTTTTCTCCTCTATGAGTTTGTTTAAGCCTTATTAGAGTATATGTTAGTGTATGTAATCTAGGCTAGGTCTA ACTCAGCCTGAAAAGCTAGCTCATGAGATGAGCATTGCGGAAGCCTTTATAAGCTCTACTTTGGTCATATCTCTAATTGA GTAGGATTTCAACACACCCCCTCACGCCTAGGACTAGACATATGGAGCGTGAAGATATGAAAAAGCCACACGGCCAGGTA GATTGTACCAGGAAATCCACGGGGCCATGTTGGCTTTTGGAAAGACGTGGCTAGCCTAATAATTAATATCGATCTAGGAT AGGTTTGGATACCTTATATGAATTTGGGATTGGCTGAACTGAAGCCTTAAAGCTGGCTTTCAAGGTAGGATTGGCAAAGT CTTTATAAGAACTGTTATCTCCATATCTCTAATCAATGTTGGATCTCAAGTCTCAACATATGTCATGAACCAACTATCAC AAAGGCTTAAGCTATTGGGTGAAGACACATGAATGATTTCATGTTATATTTCCAACACGCCCCCTCACGCAATAGTCCAT TGAGCTTAAAGAGTGGACAATGCATAAGTCCACCTAACATGTGCTCAAATTCAGCTTTTTATTAGAATAGTGAGAGAAAT GAGGATTGAACTCCAGACCACTTGGTCATAGAGGCTTTGATGTTCTGTCATGAAGATATGAACCAATAGAATTTGTAAAA CTAATGGCTGCAATAAGGGAAGCCTAGAGTGGCCGCAATAAGGTGGAAATTCAGGGGTGGTTGCTATGAAGGTGGAATTT TGGGTCTAATATAACTTATATTGGGGGAAGACACATGAATGATTTTAGTCAAACAGTTGGTAGCTTGTCAGGAACAGCTC ATAAGCTCAGTTAGTGTCTCTAACAGAATCTGGGTGACAGAATATGTTAGTTATTACTTGTTAGTCTTAGTCAGTTATCA TACGAAGGTTCTAGACTCTGTTAGAAGTGCAAACACTAAATATATTTTAGTGTAGCTAAATTCAGATAATGCAATCATTC TCAGATTCTTCAGAGCTAACTTTATTGACCATTCTCTTTCTCTCACTCTCTCTCTCTCTCTTCTACTTTTCATTTTCGTC ATATTTCTGATAAGGCAGCTTCCTAAAGGTTTTTCTTTCTTGAACCTTACTTTATTTACTCCGTTATGTTTATTCTTTTT CATTCTGGAAATTTGCAGATGGAGCCCGTTCCAAGTGGAAATCTGCCTCCTGGTTTTGATGCTTCTTCTTGCCGTAGTGT GTGAGTGTTAGATTTCTTTATGCTTTTAGATGTTTTCTGTCCGTAGTTTCATTTTTGTGCCCAGGTATGGCAGTTTTCTA TTAGATACCTAAAATCAGACTGTAAATGCAAATTTCTTTACACAATGGTATTCATAACTGATCTGAATGTCTGAGATAAA TTTGATACCAATCATGTTCAATATGATATTAAATAATCCCTACCTGAAGAAGTCTAGTTTTTCACCTTGACAGCTAACTA ATCAGAAAATGCATGCTTTCAGTTATGTAGGAAATATTCATGTAAATGTTACCGATAAGCTTCTCGCAGAAGTTTTTCAG AGTGCTGGCCCTCTTGCTGGGTGCAAGCTCATAAGAAAAGAAAAGGTTTGTTTTGATATTCAACTCAATTTTCTTTGTTA GTGATCACTATTAACATTTTAGTACTTTTTCCCACAATTTCCCTCTTTTAACTAGCCTTGTTTCAATAAAGTGATAAATA AAACAATTTTGCTATTTTTCCTAAAAAATGAATATGTTGGTTATTTGTACTGATGAGTAAGTTTTTTTTTCTTATTTTAA TTTCTGCTTTGCATAAGGGTTTAGACTGCACTCAGAATTATTTTTTAGGGAACTCTTGGGATATTTATTCTATGAAGGTA ATAGGTTTTCATTCATGGAGTTCTTAAATGATATGTTTCATATTAAGAAAAAGAATGTATATCAGTACAAAAATAGTTTG GTGAAGCTGGCCTTCACTAACAGAGAATTAGTTTTTCCATTGCCTTCCTTCTTTAGAAATTAGAATCCTCTCTTGCTGTG ATGAATGATGGGGTTGTAGGACTAGTGCCTTCTCCTTTTAACGTAATTTATTATTTAATCTTTATGACAAGTTGTCTATA CCGACCTTGACAATGTAAGATGGGCTTCTCTAGTTAGGAGTTTTGCATGCTTAAAGGTTAAAATTGAGAGCTTGAGAGTG AGAAGCATCAATTTCGTTACATCTTGCTTTTGTGTTATGTCAATTGGCAGTATAATCAGTCCTGCTATGTGGTTCATAGT ATAATTCCCCCAACAGTAACTCTTGGTTTAGTATCTGTACTTGACTATATATTATATGGTTTTCCTTGCCCTTATCCCTA CTATCTTTGCTCTACCTTTTGGTCTCGGCTGACTTGTTTGCCTTTTTTATTGTGAAATTACTCTTACAGTCCTCTTATGG TTTTGTGGACTACCATGATCGAGCATCTGCAGCCCTTGCCATAATGACATTGCATGGACGACAACTGTAAGCATTATCTT TAATAGATTTTTATTCTGGTTCTGTGGCATCTTTGCGTAGAATATTAACTGTAAGGCATTCTGCATCTGGATTTTCTGGA ATGACTACAGTCTACAGATAACAGATGTTGTTTTAATTATGCAATATTACAATTTCCTTGGAGTTTTTCTCTACTGTTGG CAACTTCACATTAGTTTATTTTCTTTTTATTTCCTTTTGCAGATATGGGCAAGCACTTAAGGTCAATTGGGCATATGCCA ATAGCAGTAGGGAGGATACCTCAGGTTACTTTTAAGCACATGCTGTTTATTGTTGATTTTGACTATTTTGCTTCTTGGGG GCATCTTTTTTGTTTTTTTTTTTCATTTGTATATTTTTTTAATTTTAGTTTAAAATCATCAGGTCACTTCAATGTATTTG TTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCTTGCTTCTCAGTCTATCCTAGTTGTTCGTGAGTTCCT CATTGCTTTGTTTTTTTTTTCTTTGTTGCATTTTTTTGTAGTGCAAGGTACTTCTTTTTGCTAGCAACTGTTTTAGTCAT TGTTAGTGGTGAGAAGTTGAAGAAAGATAGTTGATATGGGGGAATTTACTTTTCGACGAGTTACCGAATCCTGCAAGATA TTTTTGTTTGCAAAACTTACTTTTCCATCTTCTCTCTTATTATTGACAGTGATGCAAGGGTTATGTGGGATCACAAAACT GGTCGCTCAAAAGGATATGGTTTTGTTTCTTTTCGTGATCATCAGGTATTTCTCATTCCATATACTGGAATATACTGGAA ACTAGGTGTTAGTGGGCTAGCTAGTGATGATGCCCAAATAGGCTGAAGACTCTGGTTCTGTACAGTTAGAATTTTGTTAC AGACTGCTTAATGTGGTTAATTAGGGAGCTCTTAGAAGGTGCTAAAGGGGCTATAGGCTATATTAGGCAGTGTGTTACTT GTTGAGGAGAGATCCAGAACCTCAAATTATGGGAGTTTGTATCCATATGAGTCTGCACCTACTTTTATACAGCACTGAAT AATCCTTTCCTTAAGTCTGATTTCTTTCTCATTTTTGGTGCCAGTTGTATCACCATGTTTGTTGATTATGTGTTGAATTA GTAAAATGATATGTCTTTGTGCAATCAATATGCAGGATGCTCAAAGTTCCATAAATGATATGACGGGTTAGGCATTTTAT TATCTCCCATGCTGTTTGTTCCCGGCTTCTGTTGTCATTTGCTTTGTTCCTACCAACTTTTGGTATTTTCTGTATTTAAT AGGTAAATGGCTGGGAAATAGGCAAATACGATGCAACTGGGCAACTAAGGGTGCTGGTGGAAGCTCTAGTGAAGAGAAGA ACAGTGACAATCAAAATGCTGTCGTGCTTACTAATGGATCTTCAGGTATCCTATTCCTTTCTAAGAAGATATGCGCCTGA GCCCATATTTGTAAAACCATGAAAATAAAGATGAAGTTTATAGTTTAAATTTGTATACTTCTCAAGATTTGGGCTATATT AGGACCACTCCTATAAAGAATAAAAATAGCGTGTGTATTTGGGCAGCCCATATTTGTTAGACAAAAGACAAAAGCCTCAC CTTCTAGTAAATGCCTCTGGATTTCTACTTGCTTGATGTGTATGAAGTCAGTTTTGATGTGTGCTTTGTTAGTATATTGG GCTTTTGGTATTATGTATTGTTATCATAATGTGTTCAAAAGGGAAAGAGTAGAGAAGAAAGGCCTGGATTGATACAAATA GCAAAGCTAACTTAGTTTGAGTTAGACTTCACAAATGCAATATGTTTTACTACTTCTGTGGCACAGTGTTTCTGTTGCTA AGTTTATGGAGTAACTAATGATTACGGTGACTGGAATTAGTTCAGAATTGGGACCTCCTTTAGCCCCATGCCTTGAGTGC TTCCCCGTTTCCTATGCATTTTTGTAGACAAGTTCGGAACTTTAGGATTGCTGACGGATAGTTATAATTCCCTTTTTCTT TGTGTGTTCTACAGATGGAGGTCAGGATAATAACAATGAGGAGGCTCCTGAAAACAATCCTTCATATACCACAGTTTATG TCGGCAACCTTCCCCATGATGTAAGTTAAATGAATTGAAAGAATGAAATATTACAGTGTGAATCTTTTAATTTCTTCTTT ATTCACAAAGATGAAAATATATTTATGTATTAACTGGAATGGGATTGGTTTGTTAATATTGGCTCTAAGCATAATTTTGG AGGAATTATTAAGGGCATGCATATATTTCAAATTTTCAATGACACACACACTCACACACATATATATATCTGAATTACCT TTGTATTTCTAGTTTTGCTTTACCACTGTCAGCTCAACATTATGATGAACTCACAGAACTGCTACTGATTTATTGAAGAA AACAGAGACTCAATCCTCAAGAACTGAGGTTGAATTCTCAGGAATTACACAGAAGAATCAAGAACACTAACAAGAACCCT AACCACTGGAATTCGAGATCCAGAATCTCCCAAACAACTACCCAATCAATAACTGCTCTAACAGAATGAGCAGTTCCCTA TTTATACAAATCATAGAACTAACTATAACAGAATAACATGACATCAGCAATTACAACTGTCAACAGCTTGTATTTAAAAG TAACTAACATAGTTCATTTCTCTTATTCTATTTATGACTTAGAAATAGCCTTCTAAGTCTTACTCTTCTTATTCCTCCTA ACATAGAACTTAGTAACCAAGGGCTTCTTATGCTGTGAACCTTCATCACATTAATAAAACCAAAGTGCCTGAAAAATTGC ATAGCAAATGGAAGATAGTTTTCGGCTGCAATCTTTGCAGCTGTAGGAGTGCCTAATTACATGTGGTTAGGGACACATTG CATGCCTAGGCTTGCCAAGGATTATAAGTGTCTTGAATTTAAATTAGTGTATTCAAATTTCAAGCGTGATTTGTGCTTGG TGCTGACTTGACTGATAGTTTGACTAGGCTCAAGTCTCAACTAGGAGTTTTTTGTTTGGGGTCTGGTTTATTTTGTTTTC CTTGTAAAAACCATTTTTGGCATTTTAATACTTGTTTCTTGCATTTACTTATTGATGAATGTATGTTAAATCTGCTACTG TATGGAATTGTATTTCTCTGATTGATTGTCATAATAGTCTCGCAAATGATCACAAATCATGAATTGCTTATTACAAAACT TCTTGATGTTTAACCTGTCCTGTCTCTAAATTTTTGGTTTGTGGTCACAGGTAACGCAAGCTGAACTCCATTGTCAGTTC CATGCACTGGGGGCTGGGGTGATTGAGGAGGTCCGAATTCAGCGGGATAAGGGTTTTGGATTTGTCAGATACAACACTCA TGAGGAAGCAGCATTGGCCATTCAGGTGGCTAATGGCAGAATAGTTCGTGGGAAGACTATGAAGGTGAGAAGTTTTTCAC TTGTTGCTTATCTGGTCGACTAATTAATTGACATTTCAGTATTGGGGTTGATGTTTATCCTTTTTGCAGAGTAGATGTAA GTCTTGCTTTTTTTTTTCTTGCTAATAGCTGTTACTCATACAGACACAAACATGCTTGTATCTATCCATGCCTCCTACTA TGTCACTTCTGATACAATTAGATATTAGGCCAACTAATGGCTTAACTGTTGGATTGAACATTTGAGGGAGGATCTTAACA GATCATTGTATTAGTCAGGATGTTAGTGAATGAGCTGAATCAGTTAGAAGGTTGCTGTCAATTAGTGGGTTTGTGTCAGC TGTCAATTAGTTAGGGGAAGTTATAACAGCTGGACAGTTACCTTTCTTATAAAAGGAAAGGATAGTTACAAGAGGGATTC ATTCTGGAAATTGGGATCAGTTTAGGGGAGAGTTGAGCCTATCAAAAGTCTCTACTACCTTGTATCTCTTAGCTCTATTT TCCTAAGTCCTACGTTGGGCAGGTTAGGGATCTTCATCAACAATACATTCAGTTTTCTTGTTGTTAATTGCTGGTACCTA TCAAATTCCACTGAAAAGAAGTAATGTGAACGACCTCTGTGAACAACCTCTGATAGGTGTGATGGAGGTCGTCTTTGGGT GATATATTGATGGGAAATTATAAAATATGGATGCGATAAGAGCATCATTTTACAAATTAAATGCTAAATCTTTCTACCTT GCCTATTTTTAAAGGCTTGTAGTATGTTTTCATGTGACTAAAATCTAGTTCACTTAATTTGTGCAGTGTTCATGGGGTAG CAGACCAACTCCTCCGGGAACTGCTTCAAACCCACTACCTCCTCCTGCTGCTCAACCATATCAAATACTTCCCACTGCAG GGATGAACCAGGGCTATTCTCCTGCCGAGTTGTTGGCCTATCAGCGCCAATTGGCCCTGAGTCAGGCTGCTGTATCTGGC CTTTCAGGTCAAGCTCTTCTGCAAATGACCGGCCAACACGGCCTAGCCCCCGCTTCAATGGGCATCAACACCGGGGCATC TCAAGCCATGTATGATGGATATGCTGGTAATTCATCAAGACAGCAGCTTATGTACTATCGTTGA
CDS sequence (LotjaGi1g1v0396400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAACAGAGGCTGAAGTTGCAGCAACAACAACAACAAGCCCTCATGCAGCAAGCTTTGCTTCAGCAGCAGCAGATGTA CCACCCTGGCATGCTCGCCGCTGCCATGTCTCAGATGGAGCCCGTTCCAAGTGGAAATCTGCCTCCTGGTTTTGATGCTT CTTCTTGCCGTAGTGTGTATGGAAATATTCATGTAAATGTTACCGATAAGCTTCTCGCAGAAGTTTTTCAGAGTGCTGGC CCTCTTGCTGGGTGCAAGCTCATAAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTACCATGATCGAGCATCTGCAGC CCTTGCCATAATGACATTGCATGGACGACAACTATATGGGCAAGCACTTAAGGTCAATTGGGCATATGCCAATAGCAGTA GGGAGGATACCTCAGGTCACTTCAATGTATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCTTGC TTCTCAGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACTGGTCGCTCAAAAGGATATGGTTTTGT TTCTTTTCGTGATCATCAGGATGCTCAAAGTTCCATAAATGATATGACGGGTAAATGGCTGGGAAATAGGCAAATACGAT GCAACTGGGCAACTAAGGGTGCTGGTGGAAGCTCTAGTGAAGAGAAGAACAGTGACAATCAAAATGCTGTCGTGCTTACT AATGGATCTTCAGATGGAGGTCAGGATAATAACAATGAGGAGGCTCCTGAAAACAATCCTTCATATACCACAGTTTATGT CGGCAACCTTCCCCATGATGTAACGCAAGCTGAACTCCATTGTCAGTTCCATGCACTGGGGGCTGGGGTGATTGAGGAGG TCCGAATTCAGCGGGATAAGGGTTTTGGATTTGTCAGATACAACACTCATGAGGAAGCAGCATTGGCCATTCAGGTGGCT AATGGCAGAATAGTTCGTGGGAAGACTATGAAGTGTTCATGGGGTAGCAGACCAACTCCTCCGGGAACTGCTTCAAACCC ACTACCTCCTCCTGCTGCTCAACCATATCAAATACTTCCCACTGCAGGGATGAACCAGGGCTATTCTCCTGCCGAGTTGT TGGCCTATCAGCGCCAATTGGCCCTGAGTCAGGCTGCTGTATCTGGCCTTTCAGGTCAAGCTCTTCTGCAAATGACCGGC CAACACGGCCTAGCCCCCGCTTCAATGGGCATCAACACCGGGGCATCTCAAGCCATGTATGATGGATATGCTGGTAATTC ATCAAGACAGCAGCTTATGTACTATCGTTGA
Protein sequence (LotjaGi1g1v0396400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQQRLKLQQQQQQALMQQALLQQQQMYHPGMLAAAMSQMEPVPSGNLPPGFDASSCRSVYGNIHVNVTDKLLAEVFQSAG PLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFAC FSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSSINDMTGKWLGNRQIRCNWATKGAGGSSSEEKNSDNQNAVVLT NGSSDGGQDNNNEEAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVIEEVRIQRDKGFGFVRYNTHEEAALAIQVA NGRIVRGKTMKCSWGSRPTPPGTASNPLPPPAAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTG QHGLAPASMGINTGASQAMYDGYAGNSSRQQLMYYR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 376 | 376 | 6.4E-196 | – | |
| PANTHER | 1 | 376 | 376 | 6.4E-196 | – | |
| Gene3D | 1 | 140 | 140 | 2.6E-19 | ||
| ProSiteProfiles | 40 | 130 | 91 | 12.475 | ||
| SUPERFAMILY | 48 | 134 | 87 | 3.63E-18 | ||
| SMART | 58 | 126 | 69 | 1.3E-9 | ||
| Pfam | 61 | 124 | 64 | 2.6E-10 | ||
| SUPERFAMILY | 135 | 246 | 112 | 1.07E-26 | ||
| Gene3D | 141 | 220 | 80 | 5.5E-23 | ||
| ProSiteProfiles | 141 | 219 | 79 | 16.313 | ||
| CDD | 142 | 216 | 75 | 4.61372E-49 | – | |
| SMART | 142 | 215 | 74 | 1.8E-22 | ||
| Pfam | 143 | 213 | 71 | 6.0E-18 | ||
| MobiDBLite | 218 | 262 | 45 | - | – | |
| Gene3D | 241 | 340 | 100 | 1.2E-23 | ||
| SUPERFAMILY | 249 | 341 | 93 | 5.1E-23 | ||
| CDD | 263 | 336 | 74 | 1.58523E-36 | – | |
| ProSiteProfiles | 263 | 337 | 75 | 16.278 | ||
| SMART | 264 | 333 | 70 | 1.3E-16 | ||
| Pfam | 265 | 331 | 67 | 2.9E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0396400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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