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LotjaGi1g1v0396700.1

Overview

Field Value
Gene ID LotjaGi1g1v0396700
Transcript ID LotjaGi1g1v0396700.1
Lotus japonicus genome version Gifu v1.2
Description Ribonuclease H2 subunit B; TAIR: AT4G20325.1 ribonuclease H2 subunit B; Swiss-Prot: sp|Q5HZP1|RNH2B_XENLA Ribonuclease H2 subunit B; TrEMBL-Plants: tr|I1K961|I1K961_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0396700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:88268755..88274127) extracted from Lotus japonicus Gifu genome v1.2.

CGGGAGGCACAACTACAATTTTCAGAACAAGGTTTCACATGCCTTAGATGGGTGCTTATAAAAAAAAAATGCCTTAGATG GAAACTAGGTGTGTTGGACCTGGTTGAATGGACCATAAACCGCTGGGCCTGGTCCAATCCAATTGAGATAGAGGGAGGGA AAACAATGGAATATCCCATTCTCTCCAGAAACGCTGTCTGTGCGCGCGCGCGCCACATTTCATCGATTTCCAATTCAAGG TCACTGTCGTCACTCTTCACCTTTACCCTAAACAAACGCAAATGCCCTAACTTCACCATTCGAGTTCCTCGATCGTTACA GTTACAGAAGAAAGAGCGAGTGGCAGTGGTAGCTAGGGTTTCTATGAGCTGGTCTAATGGCATTCAGGAACCTAGGGTTC TAGTTGCACCTGGTAAATTTCTCTCATTCTCATACACATTTTTTGTATTTCCATGTCAAACATTGTAACCAGTTTTTCAT TGGATTTGTGAACTTTATCTGCATTGATTAGATAACAATGCTCTTGTATTAGGTTACAGTCATGTGTTGATGTTTTTTAA TTTTATTCTGCAGATCCTGGTATAGATGGAAATTGTTCGGGACATATGATATTGCTCCGTCATCCCAAAACTGGTAAATA CATGATTTATTCTAATTTGTCTACCTTGATTTCTTAATGTGTTGATTAGAGTTTGATATGGTTTTGTTTATAACATTATA CTACTTTGCTATAAATCTTTCTTTAGCAATTGGACCTTATTATTTAGGATCTTTTATATGCTTTTACTGGTTTCACAGGG AATGGAACACAGTATCTCTTTGTAAATGGGGCACTTCAAGAGCTTCAATGGTTTAAGAACTTATATGGATCTTGGTTTTT GGGAGATTATACATGTGAAGGTATGTGTTTGATTATCTAAGATGCAAAGTAGGAAGCTAAGCATTTGCATTGTAATTTAT GTTTCTATTTGCGTTAGGTACACTATTGTCTCTCATTAACATCTTATATGAGAAATCACATGCTTCTGCTTTTATTCAAG ATAACTTTGTTGTTTCTGCTCTGCTTATCTTGTGTTTTTGTACTTCTAGGTCTAACCAACACTTCATAAAACCCTCCCTC TTCTTATCTTAGTCTGATTTAAAGTAATATGAATACTCTTGTTATGTTAGTATTTAGTAGTCCCTAATTCTCTATGTCTA AACATAAATTTTGCTGTCTGTATTTTGTTCTCGAACAGATGGTCGGATGTATTTATCCACACCAGTTGATCCTGTTTTCA TCATGCTACCCATATTTGAGGAGGCTAGAATGAAGGTAATTTATGTTTCTTTTCAAGCATGGGAGTTGGATGATATTTCT TACTTCCATGTTCTTTTCCATCTGAGTTAATCCTTGGTCAAATGTTGCTGATGAATCAGAATAAAGTTTTAGTTGGACAT ATGACACTTCAGGTCTAGGGCCCACTCGCACTAATAAGTTTAACCATAGAGGAACCCACACACAAAGTTAAAGATATGCC TTGTTTATGAGCTCCATTAAACTACTTTTGAGGTGTGAGAATGGATTAATTAGGTCTATATTGTGTTTCTTTCCCTCCCA AAAAAAAATTATATGAATATAACTGGTTTCTTGACAATGTATACAGAAAAGGGATGGTGATCTTGGGAATTTCAGGCAAT TGGATGAAATCTTGTATATTGATGGGTATCCTGGATATCATCAGTTAATGTCCACCGTGGAGAACTGTATGCAAGTAGTT TGTGAAGTCAAAGGTGACCCTATTCTTGTATGCCTTTCTATTTGGAATTTTGATTTGAAAGTTCTCTAGTTATCTTATGA TTTAAGGAATTTATTGGGCAGCTTTTGAGGAAAAAAGGACAAGTTTGTTGTTGTCTTTGTGTCTTTCGTACTGGTTATGG TAGCAAGGAATGGCGACCTCATTCTTATGTCTGATGGCATGCATACAAAAGAAAGATCGCCCTTGCTAAGATGATATATT CATTATAGTGCTGATAAAAAAATATCTTATAGTTATGGAAGTTAATGTAATTGTGGTGATTAAATCCGCTCTCTTCTATT GGTGTGCATTTGCAGAAGTTGGATCCTTAAAATTCTTCAGGCTTGATGACTCAAAGGTTCTACGTTGGTTGTGCTACAAG GTTTGTTTATATTTCTTCTAAGATTCGTTTGAAATTGGAATGAAAAGATATTAAAGAAAATTGGATGAAAGGAAATGGAA AGAAGAGAAAATAAGCTAAAGAGAAATGAGTGGATATTAAAGTTGTTAGGATTTAGAGAAAATGGTAGGAAAGAAAAGTA TACTTTTCTCTCTGCTTCTTTGGATTAATGGAAAGATGAGAGGATAGAAAATCTGTGAGATATATGATCACCGTGTTACC CTCTTTGTACAATCTTTACAAATAATATATCTTCAGTGTATAATCAATTAATATGCATGCTAATATATTACATATAGCTT AATGCCACACAGAATATAACAAATAACCATTAATCAATTACTAATATGTGCAACTGATTAGTAGATCAATAGGCTCTGAG CATGCATTCTTTAAATGATTATGTTGATATTAAACTATTAATCATAACCTGCAGACATAAATCATAAACGAGCAATTTCT CATGCTCACATCAACATCCTTCAACCTCTTCACTACTATCATGGTCTTTTTGACATCCTGCCCATATCCTTCAATGACAA TGTTATAACAATTCCTTGGTACTGCACTTAATGACCCATGTGTAGAGGGAAGGGTTGTCAATAGTGCAATACAGCGCTGT GTAGCGGCTCCTGACCACTACTGGCCGCTGCATAGAGCTGCAGCCACTAAAGCGGCCTTCGCGGTGTGATTTCGCTGCTA TTTGATGGCACTGACAAAACCTGAAGTGTTGTGAAGTTGATGTCAGGGCATTGTTTTTAGGGTTTTGTACTTTGGAAACA TACTGAAAAAGGTTTGGTTTGACGAGGGTGAGGAAGAAGATATCTACAACTTTGATAGTAGTGAAGGTGTTAGGATCCAA GAGAAACCTCCACTTTGGAAGGTTTATTCTAGAAGGGAGTGTAAAGATAAGGGGAAGGCAGCCTAATTGTTTGGGCTTGG TTTAGTTATCTTTATCTGCGATTTCTCACTATGAAAGGCGTGATTTCTGCAACTGTATAACCTGCGCTTCGCGCCTCTTC CAAACATGGGAAGATTTCATTTTCTAGCACTTTTCTTGCCTTAGGTTTCTATTGCAGCTTTTCTTGCCTACATGTTCAAT CCCCCCACCTAAACCATCCTTCAAAGGAAAAAGACTAGCATACACAATATAACTGTAGCTAATTATGTCATGGAGATATA ATATTTACAGATAAATGTGTGAACTCCATGATGTTTTTCATGTGAATGTGACAAAACTGAAACATGACCCATCAATTCCA TCATACCATAAAGAGAGAATTGTAGCCTGTCATCCGAGTTGGTTGTTAATACAAGTATCCATCTATAAAGCAACCCAAGA AATTTGTTCGCATATAGAGGATTTGCTTTCTAACTTCTCTATTCAGCTTTCGGTATATGTTTGGCCATCTTTGATTAAGT TGCTAGAAAACTTTTCATCTGTATTAAAGTTTTTTTTATCTTGATTTCTCTTATTTTAGGCTTGCCAGCTAAAACAGACA CTACCCAAATTGGACAAAAACTATGCTGTTCAATCAGAGAAAGACACATGTAAAGTCTTATATATGTTCTGCTAGCTTTT AAGGAATTTTATTCTGTTCAGGTTAAGTTGGAATATGATAAATATTTTGTATATTGAAACGGAAAAGACTGAAAAATGGA CCCCTTGAAATGCTTTCTTGTGCATCTGCTCTCGGATTTGTGCCTTTTACTGCACTCTGTATACATGCACAATGGTGATA AGGGGTAGGCATATTAGCAACTTGTGAAGTTGATGTTTCTTTCGTGTAAGTTAGTGGCTAAAATATTTTTGGACAGAAAA AATTTATTTCACAGTATAATGCATTAAAACATAATTATGTTACTTGGGTTGTTAAAATTGGACAACGGAAATTGGATAGC TAAATTTATCCTTTTGTTGATACATTATCTCCTTTTCTTCTATGTGAAGCTGAAAATCATGCTTGTGGTGACTGGTTTTT GTATTGTTTGAGGATCCTATCATTCAAGGATGCACCTCTTCTCTCCCTAATTATAGTTTGGTGCATGAACAATATGCCAA TATACACATTAATGTTTCATTATTTGGTGCATCCTTCTCTCCGTACTTTAAGTGCGTCTCTAGTATTTTCATGTTCAGTT TTCCCGTTCATTAACGTAGTGATGTTACTGATGCAGTGGTTGATGCAGTCTCTATATTAGGAGAATATTTGAAGGAAGAA CCTTGGTTGCAGCTTTTGTGCAACCACCTTAAGTAAGTGCTTTCAAAATATCTCATTATAAAGATTTTAACTTACATATT CCTTGTGATTATAAGAGAAACCAAATTGGGTTGGAATGAGACCCTTTAAGGAGATTTTGCTTTTTCAGGTTAAATTTGCT TGAGGTAACTGGAAGAACACAAGTAAACACAGAAGAAAGTAGCGCAGGTTTATATAATGAATCACAGGTATTTAATGGGA CACGAGAAGAATGAGAGCCCGTATGGTTTACCTATTTATCTACCGTTAGAAAGTATGAAAATGAGAAAATAACATGCCCT GAGACACTTTTTTTGTAAGTAACAAGTTGTTAGTTTAACAAAACGTGCCTCGGGATAAAGTGCCTCAGGATCGTGATGTG TTATTTTCCTGTTTCATACCAAACGAGCTGAGTACTCTGGATTGTAATGGTTTGTTTACCACTGATGTGATCAGGAACCG AATGATGAAAAGAAGGCCCCAATTGCCAAGAAAGGTAGGCAAGCAAAGAAGACAAAACTAGAGACAGAATCGCATAACAT TAAAGACATGTTTTCAAGAGCCTCAAGAAAGAAAAGCTAAATATTCCATTTTCCATTGAAGATGGGTGTCATTGTCATGT ATTGCATCCTTTTTCTAGACCTGCGAGTAGTGGATAAGCACCGAGTCACCTCCTGGTTTGTACCATTCGTTTAATGTTAT TTAGCTTGAGATGTTATCCTATTTATCATCAATTTCTATTTCACATGATGCAGCAGCAGCAGATATTATCAAATTTAAAC ATCCATAAAGGTTTTAGTATGTTATCTGATTTAATATGTATAGCGGAGTAAAACACTCATTTTGGTCTCCAATATAGCCT CGTATAAATGGAAAAAGTTACTGTCACGATGTATTTAACGTTGATTTTTTTTGGGTTTAACAAACAAGAAAAAAAAAAGA AACAATTTAAACC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0396700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAATATCCCATTCTCTCCAGAAACGCTGTCTGTGCGCGCGCGCGCCACATTTCATCGATTTCCAATTCAAGGTCACT GTCGTCACTCTTCACCTTTACCCTAAACAAACGCAAATGCCCTAACTTCACCATTCGAGTTCCTCGATCGTTACAGTTAC AGAAGAAAGAGCGAGTGGCAGTGGTAGCTAGGGTTTCTATGAGCTGGTCTAATGGCATTCAGGAACCTAGGGTTCTAGTT GCACCTGATCCTGGTATAGATGGAAATTGTTCGGGACATATGATATTGCTCCGTCATCCCAAAACTGGGAATGGAACACA GTATCTCTTTGTAAATGGGGCACTTCAAGAGCTTCAATGGTTTAAGAACTTATATGGATCTTGGTTTTTGGGAGATTATA CATGTGAAGATGGTCGGATGTATTTATCCACACCAGTTGATCCTGTTTTCATCATGCTACCCATATTTGAGGAGGCTAGA ATGAAGAAAAGGGATGGTGATCTTGGGAATTTCAGGCAATTGGATGAAATCTTGTATATTGATGGGTATCCTGGATATCA TCAGTTAATGTCCACCGTGGAGAACTGTATGCAAGTAGTTTGTGAAGTCAAAGAAGTTGGATCCTTAAAATTCTTCAGGC TTGATGACTCAAAGGTTCTACGTTGGTTGTGCTACAAGGCTTGCCAGCTAAAACAGACACTACCCAAATTGGACAAAAAC TATGCTGTTCAATCAGAGAAAGACACATTGGTTGATGCAGTCTCTATATTAGGAGAATATTTGAAGGAAGAACCTTGGTT GCAGCTTTTGTGCAACCACCTTAAGTTAAATTTGCTTGAGGTAACTGGAAGAACACAAGTAAACACAGAAGAAAGTAGCG CAGGTTTATATAATGAATCACAGGAACCGAATGATGAAAAGAAGGCCCCAATTGCCAAGAAAGGTAGGCAAGCAAAGAAG ACAAAACTAGAGACAGAATCGCATAACATTAAAGACATGTTTTCAAGAGCCTCAAGAAAGAAAAGCTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0396700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEYPILSRNAVCARARHISSISNSRSLSSLFTFTLNKRKCPNFTIRVPRSLQLQKKERVAVVARVSMSWSNGIQEPRVLV APDPGIDGNCSGHMILLRHPKTGNGTQYLFVNGALQELQWFKNLYGSWFLGDYTCEDGRMYLSTPVDPVFIMLPIFEEAR MKKRDGDLGNFRQLDEILYIDGYPGYHQLMSTVENCMQVVCEVKEVGSLKFFRLDDSKVLRWLCYKACQLKQTLPKLDKN YAVQSEKDTLVDAVSILGEYLKEEPWLQLLCNHLKLNLLEVTGRTQVNTEESSAGLYNESQEPNDEKKAPIAKKGRQAKK TKLETESHNIKDMFSRASRKKS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13383
74 340 267 2.1E-88
IPR040456
Gene3D
G3DSA:2.20.25.530
77 145 69 1.8E-10 –
CDD
cd09270
78 232 155 1.29595E-46
IPR040456
Pfam
PF17745
94 147 54 8.0E-7
IPR041195
Gene3D
G3DSA:1.10.20.120
146 275 130 8.8E-14 –
Pfam
PF09468
150 243 94 1.1E-8
IPR019024
MobiDBLite
mobidb-lite
290 342 53 - –
MobiDBLite
mobidb-lite
301 336 36 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0032299
Cellular component Ribonuclease H2 complex A protein complex that possesses ribonuclease H activity, in which the catalytic subunit is a member of the RNase H2 (or HII) class. For example, in Saccharomyces the complex contains Rnh201p, Rnh202p and Rnh203p.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0396700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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