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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0397400 |
| Transcript ID | LotjaGi1g1v0397400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Oleosin; TAIR: AT2G25890.2 Oleosin family protein; Swiss-Prot: sp|Q96543|OLE16_BROSE Oleosin 16 kDa; TrEMBL-Plants: tr|I3SZR3|I3SZR3_LOTJA Oleosin; Found in the gene: LotjaGi1g1v0397400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:88369760..88371822) extracted from Lotus japonicus Gifu genome v1.2.
TGCGAAGCGTAATTAACCACACCATCATATGCCACCTAGCTATTGTGATCACCAGGTAACAATATTAACAGCAAAAGTTA CTGCGAACCTGCAACTTTCCCCTTGTTCTGTTGTTTTCATTCATCATAACACAACACGGTGAAAAACAGGTTCATAGCGT TATCAGACACTGGTCATTTATAAGGGACAGGTGTTGCTTCTTCTGCAACTAAGTTTCATGCAAAACAGCCACGACATGCA ATGCAGCCTCACCTCCTGCCGCGTAATCTGCCACCAACACCACCTACACTGCTATCTATATACCACTCTCCTCTCTCAAT CCTCACAACAACTCATTCCTCAACCTTCAACTCTCAAAACACAACCCCATCATAGTAGCATTGTTTCACAATTTTGGTTC CAACAACATGACTGATCAGGCAAGAACAGGTTCCTACGGTTCTTCCTATGGTTCCTCCTATGACACCAACATGAACATGA ACATGAACATGAACAACAACCCTGCACCCTCACGCCAAACCATCAAGTTCTTGACTGCTGCAACCATTGGTATCACACTG TTGCTCTTGTCTGGTTTGATTCTCACTGGGACTGTCATAGGGTTGATCATTGCAACCCCACTTCTTGTTCTGTTCAGCCC CATTTTAGTCCCTGCTGCCATAATCCTGTCTCTTGCTGCTGGTGGTTTCATGTTCTCTGGTGGATGTGGTGTGGCTGCAG TTGCTGCATTGTCATGGATTTACAACTATGTCTCTGGGAAGTACCCTGCAGGTTCTGACACTCTTGACTATGCTAGAGGG ATGATTGCTGATAAAGCTAGGGATGTCAAGGAAAGGGCTAAGGATTATGGGAACTATGCTCAGGGTAGAGCACAAGAGGC CACACATGGGTCTACTTATTAGTCACTCTTCTCCATGGAACATGCTTTGAGCATTGTTGTCACCCTTCTTCTCCATCTGC ATGTTCTGGCCTTGTTCAAGTCCTGCTGTTTCTGTCTAGTTTGTTGTGTTCTATATATGTTGTTGTGGTTTCTGTATCCT CTGTTTGTTTTTGGGGCTAAATCTTTTCATCTTAATTTGTGTAATAAATCCTGTTATTAGTACTTGTAGCTAGCATATCT GCTCTTATTAAGATATGTAATGGATTGTTTCCTCGCTTAATGTTGCTGTATTTTTATGTCACTTTTTTTATTTCTCTTCT TTTGTTTAGAAGTTTCACGTTTAAAAATGGTTAGAGTAGCTCTCATCCTGAACTAGCTTTTGAGTAGAGGCCTAAACCGT ATTTTCGAAGTCTATCACAGATCTGGTTATTGGAGACCATCTATATCTATATCTGAGCAACCAGCAGTAGTTTTATGCTC TAGATTAGCTTCAGCTCCTAGGCTCAAGCTTCAGTTTGGGTTTAGCAGATAATAAACTCAAGCTCGGGTGTAGCAGATTT GTCTACAATGATTGTGGTAGAAGGCCCAAGCTTCAGTTTATTATTATCTAGAATAGATAACTAATGAAACAGATTTCTAA AATAACAGCATAAATGAAGTTTTTAACATCATCACAAGCTGATAGAGAATGAGACAGCAAATCCTGGACTTCTACTTCTA TTCCATGTAGACACCTCAACATTATGAAAGAGAAATCAGATAACATGCAAAATTAGAAGTTACAAATAATTTACAAAATT TTAACTTCAAATGCCCACATGAATTGACAGCACCGAAATATTAATAGGTAGCTGAATATCTATCTTAAATCCAATGCCAT TTTGATGTCATCATTCGGTGAATGACATTAACACATGAATTGGAAACCATAAATATTCATAATTTGTGCTCTCCTGATCC TGAGGCTTTTAGAAGAATGGAATTGACACATGAATTGGAAACCATAAATATTCATAATTTGTGCTCTCCTGATCCAGAGG ATTTAGAAGCCTTCCATTCTTTTATTGCATATTTGAAGGTCTGAGAGGATTATTGCTCTGTCTGAGACAGTTATTCCAAC ATTTATTTGTGATTGCTTTTGTCGGTGGTTGAAAGAAATTGACAATGTTTTCATGACTTCATT
CDS sequence (LotjaGi1g1v0397400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGATCAGGCAAGAACAGGTTCCTACGGTTCTTCCTATGGTTCCTCCTATGACACCAACATGAACATGAACATGAA CATGAACAACAACCCTGCACCCTCACGCCAAACCATCAAGTTCTTGACTGCTGCAACCATTGGTATCACACTGTTGCTCT TGTCTGGTTTGATTCTCACTGGGACTGTCATAGGGTTGATCATTGCAACCCCACTTCTTGTTCTGTTCAGCCCCATTTTA GTCCCTGCTGCCATAATCCTGTCTCTTGCTGCTGGTGGTTTCATGTTCTCTGGTGGATGTGGTGTGGCTGCAGTTGCTGC ATTGTCATGGATTTACAACTATGTCTCTGGGAAGTACCCTGCAGGTTCTGACACTCTTGACTATGCTAGAGGGATGATTG CTGATAAAGCTAGGGATGTCAAGGAAAGGGCTAAGGATTATGGGAACTATGCTCAGGGTAGAGCACAAGAGGCCACACAT GGGTCTACTTATTAG
Protein sequence (LotjaGi1g1v0397400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTDQARTGSYGSSYGSSYDTNMNMNMNMNNNPAPSRQTIKFLTAATIGITLLLLSGLILTGTVIGLIIATPLLVLFSPIL VPAAIILSLAAGGFMFSGGCGVAAVAALSWIYNYVSGKYPAGSDTLDYARGMIADKARDVKERAKDYGNYAQGRAQEATH GSTY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 40 | 40 | - | – | |
| PANTHER | 23 | 160 | 138 | 2.9E-70 | ||
| PANTHER | 23 | 160 | 138 | 2.9E-70 | – | |
| Pfam | 37 | 148 | 112 | 1.2E-46 | ||
| Phobius | 41 | 73 | 33 | - | – | |
| TMHMM | 47 | 69 | 23 | - | – | |
| ProSitePatterns | 61 | 83 | 23 | - | ||
| Phobius | 74 | 78 | 5 | - | – | |
| Phobius | 79 | 112 | 34 | - | – | |
| TMHMM | 84 | 106 | 23 | - | – | |
| Phobius | 113 | 164 | 52 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Monolayer-surrounded lipid storage body | A subcellular organelle of plant cells surrounded by 'half-unit' or a monolayer membrane instead of the more usual bilayer. The storage body has a droplet of triglyceride surrounded by a monolayer of phospholipids, interacting with the triglycerides and the hydrophilic head groups facing the cytosol, and containing major protein components called oleosins. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0397400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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