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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0398100 |
| Transcript ID | LotjaGi1g1v0398100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain-containing protein; TAIR: AT2G24430.1 NAC domain containing protein 38; Swiss-Prot: sp|O04017|NAC98_ARATH Protein CUP-SHAPED COTYLEDON 2; TrEMBL-Plants: tr|A0A0B2PME0|A0A0B2PME0_GLYSO Protein CUP-SHAPED COTYLEDON 2; Found in the gene: LotjaGi1g1v0398100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:88463354..88466085) extracted from Lotus japonicus Gifu genome v1.2.
CTCCTCATTATTCTTCCTTACCTTTCTGCTTAAATTCCCTAGCTAACTTCTTGTGCATAGTAGTGTTAATTTGAGTGCTT TCTCCTCGTTGATCCCTTTATATATATAGTAGTGTTAATTTCATATTTTGCAGTTTCCCTCAAGTCATTCATATATAGTA GTAGTGTTTCGTTTCCAAGTGAATCATATAAATTTGACAAGAGTAGTTTGTCTCCCCATGCAAGTAAGCACTTACATAAC TTATTGATATTCATACAGATCCCTAATTTCAAGGATTTTTCTTCCTCTATTGGAAGAAGCAAGAAACTCTTTGTATTTAG TTTTTTCCTAATTAGCTAGGGTGCTAGCTGTAATTGAACTTTCTCTCCAACTATTTACCTAGTTTCTATGTAAGAATTCT ATCATTATGTTACTTTTTGTGTGCCACAGAAGGAAAAGGAAGTGATTATCAAGGAGGGGACGGAAACTACTGAAATGGAA GGAAGTCATGGTGGAAAGGAGGAAACCCTACCTCCAGGGTTTCGATTTCATCCTACTGATGAAGAACTCATCACTTGCTA TCTTATAAACAAGATTTCAGATTCAAGTTTTACAGGCAAAGCTATAACTGATGTGGATCTCAACAAATGTGAACCATGGG AGCTTCCAGGTACATATATATTCATGAAAGTTGTCATACAAGACCTAATTTTATGTTTTTTAAGATTCATTTTCATGCAT GCATACTTTAATTTATTGTTGTAAACATGATTTTGGTTTTGTGCGCTGGTTTCAAACTAAGGACATGTTGGTTGTTTTGA ACCCTATAAATCAACAAACCACTCAGGAAACCGGCAAACATTATTTCATTTGATTTTGCGCTTTTCTTTATTATTTTTTT AAGCAAAAATTACCATTATAAAAGCAAACCAAGCTTAACGAGAACTATATCCATTTCTTTTGTTCATCAATTTATTTTTT CAAGTTCATTTTTAATCCTTTCATCCAATTCTATTATATTATATATTTATTTTTATATTGCTCGATAATCTTATAATTAT TTTATTAAGTTGCCTTTGTCTTTCTTGTAATATAGGTAAGATTTACGTGTGTTATACATAATTTGATATGTATTAACTCC TCCATTTTCTTACCAAATACAGCAAACATGGATATTTGTTTTTGCTAATAATTTTGCATGAAATAGGGAAGGCTAAGATG GGAGAAAAGGAATGGTACTTCTTCAGTCTGAGAGATCGTAAATACCCAACCGGTGTGAGAACTAACAGAGCCACGAACAC TGGGTATTGGAAAACCACAGGGAAAGACAAGGAGATATTTAACAGTGTTACATCAGAGTTAGTTGGGATGAAGAAGACTT TGGTTTTCTACAAAGGTAGAGCTCCTAGAGGAGAGAAAAGTAACTGGGTCATGCATGAATACCGCATCCACTCTAAATCA ACCTTCAGGACTAACAAGGTACCTATAAATCATGTTTGTATCAATTTATTATCTCTTAGAATCTACTCTAAAATTTAAAA TGGAATTGCATAAGTTTTTGAGTCCCCTAGGTTGGGCGCGATACAATTCTGATATGACATTCATCTAACTAACATACAAC TTAAAAAAAAGTTGATCAAAATTGTATGTCTGGTAATACTTTCCTAAGTTTTTTTCCTACTTGAACCAATTATAAAATAA TTTACACTAAATAATCATAAAAAAATATGGATTTTCTCATGTCAAAAAAAATTTAATTTGTGAATTAGATTTTTAAACAA AGCCTACATTCTTAATCAACATTTTGAAAAAGTGATCTAACATATAACATCCACTTTCTATACATACAGCAGGATGAATG GGTGGTTTGTAGGGTATTCAAGAAGAGTGCTGGTGCAAAAAAGTTCCCTACTTCCAACCATACAAGGGCAGTACTAAATC CTTATAGCCTTGAACTAGCTCCTAACATGATGCCACCACCAATGATGCAGCTTGCATCAGATCCTTCTGCTGCTCATTTC CTCTATGGAAGGAACTACATGGGAAACACTGCAGAGCTAGCTGAAATTGCAAGGGTTTTGAGAGGAGGTGGATCAAGCAG TGGTTTTAACCTGCAGCCAATGGTGCAACAATCCCAGTTGAACTGCTACCCAGTGCCAGCAGTAGGAGGAGCAGGAGGAG GAGGATTCACCATTTCAGGACTTAATTTGAATCTCGGAGGTGGAGGAGGAGCGGTCGCGTCACAACCGGTTTTGCGGCCA ATGCTGCAACCTTCTCAACAACCTCACCCTGCTCAGACAATGGCTCAAGTAATGCTGCATGATGTGAGTTCTAACATGAT GACAGGGAATCCTCTTGGTGCAGAGATTATTAATAATGGAGGTTATGGCGGCGGCACAGAAATGAGCAACGTCACGAATA ATAATCATCATGGCCATGGCAATAGGTACAATATGGGCATGGAGCATTGCGTAGATCTTGAGAATTACTGGCCTTCCTAC TAAGTTAATTAGGAGGCCTTCGTTTAGTTCATTTTACATAATCTAGTATATCTGTAATTTCATCAGCTGGATCAGCTACG TGCCATAAAAGTTATGTTTTTTGTTGTGTTTCTGTGTTTCATGGGAAGTTAAATAGGAAGTAGTATCCTTACTTTTGTGT CTTGTTCCCTTTGCACCAACTTTTTGGATGTTATTGTTCATCGATAACTATATTTTTTTCTCTAAGAAAGTGAGAATCAT CATATGTCAAGC
CDS sequence (LotjaGi1g1v0398100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAAAGGAAAAGGAAGTGATTATCAAGGAGGGGACGGAAACTACTGAAATGGAAGGAAGTCATGGTGGAAAGGAGGA AACCCTACCTCCAGGGTTTCGATTTCATCCTACTGATGAAGAACTCATCACTTGCTATCTTATAAACAAGATTTCAGATT CAAGTTTTACAGGCAAAGCTATAACTGATGTGGATCTCAACAAATGTGAACCATGGGAGCTTCCAGGGAAGGCTAAGATG GGAGAAAAGGAATGGTACTTCTTCAGTCTGAGAGATCGTAAATACCCAACCGGTGTGAGAACTAACAGAGCCACGAACAC TGGGTATTGGAAAACCACAGGGAAAGACAAGGAGATATTTAACAGTGTTACATCAGAGTTAGTTGGGATGAAGAAGACTT TGGTTTTCTACAAAGGTAGAGCTCCTAGAGGAGAGAAAAGTAACTGGGTCATGCATGAATACCGCATCCACTCTAAATCA ACCTTCAGGACTAACAAGCAGGATGAATGGGTGGTTTGTAGGGTATTCAAGAAGAGTGCTGGTGCAAAAAAGTTCCCTAC TTCCAACCATACAAGGGCAGTACTAAATCCTTATAGCCTTGAACTAGCTCCTAACATGATGCCACCACCAATGATGCAGC TTGCATCAGATCCTTCTGCTGCTCATTTCCTCTATGGAAGGAACTACATGGGAAACACTGCAGAGCTAGCTGAAATTGCA AGGGTTTTGAGAGGAGGTGGATCAAGCAGTGGTTTTAACCTGCAGCCAATGGTGCAACAATCCCAGTTGAACTGCTACCC AGTGCCAGCAGTAGGAGGAGCAGGAGGAGGAGGATTCACCATTTCAGGACTTAATTTGAATCTCGGAGGTGGAGGAGGAG CGGTCGCGTCACAACCGGTTTTGCGGCCAATGCTGCAACCTTCTCAACAACCTCACCCTGCTCAGACAATGGCTCAAGTA ATGCTGCATGATGTGAGTTCTAACATGATGACAGGGAATCCTCTTGGTGCAGAGATTATTAATAATGGAGGTTATGGCGG CGGCACAGAAATGAGCAACGTCACGAATAATAATCATCATGGCCATGGCAATAGGTACAATATGGGCATGGAGCATTGCG TAGATCTTGAGAATTACTGGCCTTCCTACTAA
Protein sequence (LotjaGi1g1v0398100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQKEKEVIIKEGTETTEMEGSHGGKEETLPPGFRFHPTDEELITCYLINKISDSSFTGKAITDVDLNKCEPWELPGKAKM GEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKS TFRTNKQDEWVVCRVFKKSAGAKKFPTSNHTRAVLNPYSLELAPNMMPPPMMQLASDPSAAHFLYGRNYMGNTAELAEIA RVLRGGGSSSGFNLQPMVQQSQLNCYPVPAVGGAGGGGFTISGLNLNLGGGGGAVASQPVLRPMLQPSQQPHPAQTMAQV MLHDVSSNMMTGNPLGAEIINNGGYGGGTEMSNVTNNNHHGHGNRYNMGMEHCVDLENYWPSY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| MobiDBLite | 1 | 32 | 32 | - | – | |
| PANTHER | 2 | 382 | 381 | 5.1E-161 | – | |
| PANTHER | 2 | 382 | 381 | 5.1E-161 | – | |
| SUPERFAMILY | 24 | 178 | 155 | 3.79E-63 | ||
| ProSiteProfiles | 29 | 178 | 150 | 60.323 | ||
| Pfam | 30 | 156 | 127 | 4.5E-40 | ||
| Gene3D | 38 | 184 | 147 | 5.9E-59 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0398100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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