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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0400600 |
| Transcript ID | LotjaGi1g1v0400600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pericentriolar material 1 protein; TAIR: AT4G32750.1 transmembrane protein; Swiss-Prot: sp|Q9P1W3|CSC1_HUMAN Calcium permeable stress-gated cation channel 1; TrEMBL-Plants: tr|G7ZWD3|G7ZWD3_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi1g1v0400600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:88831076..88834737) extracted from Lotus japonicus Gifu genome v1.2.
CATATGTATCCCTTTTTTATTTAAGAACTAACTTAAGCCTTTTGTTTCAAAAAAAATAGCCATTAAAAAGATAAAAAAAA ACTTAAAAGTAGAAATAAGTAGTTCAAGAAAGGAAATGATTTCTTTCTTGTGAGAGCTTCTAACTGTCATCTCTTTCACA TTTAGTTTCTACTTTGAATCCATCCACTTCAAGATCACTATTCTCAAATTTCAACATCGTTCTCTAAACCTCACTCGTCA GAGGCCATAGATTCTGCTAATTCAATCCATCAGAGTAGCATGTTAGGGTTTTGGAAATTCAGCATCAGAACAAATTCGAA ACCCTAGATTCCACAATTCCATCACTCATGTCGTTTTGATCAACTTCGGGAACTGCTCACTGATTTCTCCGTCGATGGCA ATCATCGGCGACGCGCTCCGGCAAGCGTTTATGCCGAAGCGCGAGTACGAGAGTCTCAGGGAAGAGGAAAAAGCATGGGG CAAGCTTCAGAGACCTGTGACGGTGGCTTTTGTGGCTGTGATATGCGTCGCGATATTCGTGTGCACGGTTATCAGTTTGA GAATCGTGTTTCCTGGTAGCGATGCGAGGAGGCCGTTCTGCGTCGATCGAAGGATTCAACCTTTGCAAATTGGAGCCAAA GGTGGTGGCTCTGATTCTTCGGATCTGTTTCCTGGCGCTTTCTATCTCACGGACCAGGAGATGGCTGATTATTACTGGAT GGTTGTGTTTGTTCCATCGATGGTGCTTTTCTTGCTCTCGGCTGTGTATCTTGTTGCTGGTAAGATATTTGATTTCATTG TTGCTTCTGGTTAGGTTTTTCTACCTGATTATAGTGTTCTGAATGCTCTGTTTTTTGTGTGTTTATTTTCAAGCATTGGT AGAAAAACAAGAGTTGGATAGACAAATTAGTTAGAGCTAGAGAGAGATAAAGGAAAGTAGAAGTTGAAAGAGATTTAGAG GCAAATAGTTTACTTTTAAACTTAATCTATGACATAGCTCTATTGGGTCACATCACGTGATCTATATAGCCAATTGCCGC CTAGTGGGGAAGAGGCTTGAAATAAGAAGGTGCCTAAAATTTAGTCACAGAGAATTTCGACTTTAATGTCAAAAACATTT GTAGTTTTTAGTATAATAATTAAGAGAGTTTCGGGCGTAGCAGATCTGCTTTATGTTATAGCATTGAAGAAATTCAGGGG TGGGCTGTTTGAAAAAACAATGTGGGGAAGAATTGTATTGGATATCGTCCTTTCATGGAATATGATTTACAATCACCACC AAATCTGAATTATCTCTGGGGTTTTGATGAAATTAATTCCTTACTTGTTACATCATGGCTAAAGTGAAGTCTCATTGAGT TAAGAGCGTAAAAAGGTGCATAATGATGGTTATTGTCAGTAAAAAAGGATTTGAAGAGGGGAAAAATGCCTTAGCTTACT TGGTGCAAGTTGAATTGGTGAGATAATTGAGTGCTCTTGGATTGTGTCCCTACTTTAGAATGCAAATTATTATGATTTCT CATTTCTCCATAAACTTGTCTAGTTTCTGATTTTGCTGAAATTTGACGACAATCTTCACTCATAAATATATGGGTTATTT CCAGTATGCTTGATACCAGTCCAGCAATGGAAGTATGGGTTACCTCTGAAAATTTTGGCCTATTGTATTACTTGATTTAT TTCTAAGATGAGAATCTAGATGGGGGAAGTTTCTACCCTATCCAAGCAGGGTAGTACTACGTTCACAAGTCTTAGAATCA CAACCTCACAACCATACCATATGCTTCTTCTAAATGAAATATTTTTCCTTTTACACTTTAAGAGAAGCTCCCTATACAGC TGCACAAATTTGTGAATCCAAGAGTTCCACAAATAGATATTACCCCACTATGAGAGTATTTATTGTTTGTCATTTGTGAT TTCCAGTACAAGCCTCTGACCTCATTGTCATTTTAGATAATGCCACAGCCCACAGATTCAACCATGGAGACTCTTTTTTG ACATATTTGCTAATAATGTGGATCTAGGATTGTCAGCCAGTTAACTATGTTCTGAAATATATTCAATTTATGTAGCTTTA GTTTTTGCAGAACTTATAATCCTTTTCTATTTGGGATTTCTTGTAGAATTGATGATGTTGGAACTTATATAGGTCAATGG TTTGTTGTTCCCACCACTAACAGTGTGCTTTCTTATCTTATCTCTACATCTTACATCTCCTCTCTTGATCCGAAGTTTGT TTTTAGCTGTAATGTATTGTACAGATGCAGCCTCTATAATAGTACAATTCTTCTTTGGTGGTATAATAATATTTACTTGT GTTGTATGAATGCCGAATTGATTGTTCCTACTGTATTATCTCGTCACTGGAATTTATGTTTTTATGTTAATGTCTTGCTA TATTCATTTAAAAGTTCTATGCCATAATTATGGAGAATATATTTTGCTTATGCTTGATTTTTTTGTTTTATATCATAATT TTCTTCCAGGCATCACTGTAGCTTATTCTGCTCCAACAAGGCATGGATGCTTGAAGGTGGTTGAAAATAATTACTGTGCT TCAAGACGGGGTACATTTTTATCAGTCAATGATTTTTCCACTATTGTGCTTTTTCTAGCATCTATGTTCATCCGACTCTG AGCTTTTTATGGGCTCAAAATTTATTGAAATATTTTTGTTTCTTTGGATAACCTACAGGTGGCGTTCGCTGTCTATCCAT ATTGAATCTTATCTTTGCTATCATCTTTGGTCTTCTTGCCTTGTTTCTTGGTTCAAGTCTCTTGACATTCATGAGCAACT GCTCTACACCTCTGTTTTGGTGCTATGAAGTTGCATCATGGGGATTTGTTGTTCTATATGGTGGTACTGCCTTCTTCCTG AGGAGAAAGGCAGCTGTGATTCTTGATGAGGGGAGCTTTAGTAGTCGGAATCTAGGGCTGGAAATGCTGGAAGCAAATCC CCTGGAAGTCACCCCAGAGGTCGAAAGACGAGTTAATGAAGGGTTTAAAACATGGATGGGTTCATCCCTTCTTTCATCTG ACGAAGAAGATGAACCTGACAGTTATGAGGAGGCACCTCATTTAACACATACTAACTCAAACAGGCAAAGGCTCTGAACT CATAAATTTCAGCGTTAAGAGCTTGACATCATCTTTTCCAGCCTTTCATGCCTTAAAGAATGCTGGGCTGGTATGGGATT CAGTTTTAGAAGAAAAAATGTTTTGACATGTATCATATGACAATACAAGTACTGATTAAAAGGAGTATGAATTTGGTGCT CCTTTGAACTACGATTTAATATGGTCCATTAGGGAATTTTAGTTTAGTTTGTTAATAACTAGTATTAAATTGTGAATGAC CAAGCTTAACTTTCCTAGGGTGGATTGCAAAGCACTCATGCTGATTTTCTCTATCTAGTCCTTGCCTTTAGACATGGTTT GTGTACTTCATTTGCAGCTAATTTTGAAACTTATAAGAAGGTCGTGGAGTCAAGTATTTTTTTGGGTATGCATAAAAGTA TATTCACCATAGGCCCTTTGAAGTGAGTTAAAGTCTTTTACTTACATTTTATTTAAGCTAAATCCTTTGTGGCCTTGTTG CAGTATAGTCTTGGAGCAAGCTGCCTATCTTTTTCGAAAGATCTTTTGCATTTTAAGTAACC
CDS sequence (LotjaGi1g1v0400600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATCATCGGCGACGCGCTCCGGCAAGCGTTTATGCCGAAGCGCGAGTACGAGAGTCTCAGGGAAGAGGAAAAAGC ATGGGGCAAGCTTCAGAGACCTGTGACGGTGGCTTTTGTGGCTGTGATATGCGTCGCGATATTCGTGTGCACGGTTATCA GTTTGAGAATCGTGTTTCCTGGTAGCGATGCGAGGAGGCCGTTCTGCGTCGATCGAAGGATTCAACCTTTGCAAATTGGA GCCAAAGGTGGTGGCTCTGATTCTTCGGATCTGTTTCCTGGCGCTTTCTATCTCACGGACCAGGAGATGGCTGATTATTA CTGGATGGTTGTGTTTGTTCCATCGATGGTGCTTTTCTTGCTCTCGGCTGTGTATCTTGTTGCTGGCATCACTGTAGCTT ATTCTGCTCCAACAAGGCATGGATGCTTGAAGGTGGTTGAAAATAATTACTGTGCTTCAAGACGGGGTGGCGTTCGCTGT CTATCCATATTGAATCTTATCTTTGCTATCATCTTTGGTCTTCTTGCCTTGTTTCTTGGTTCAAGTCTCTTGACATTCAT GAGCAACTGCTCTACACCTCTGTTTTGGTGCTATGAAGTTGCATCATGGGGATTTGTTGTTCTATATGGTGGTACTGCCT TCTTCCTGAGGAGAAAGGCAGCTGTGATTCTTGATGAGGGGAGCTTTAGTAGTCGGAATCTAGGGCTGGAAATGCTGGAA GCAAATCCCCTGGAAGTCACCCCAGAGGTCGAAAGACGAGTTAATGAAGGGTTTAAAACATGGATGGGTTCATCCCTTCT TTCATCTGACGAAGAAGATGAACCTGACAGTTATGAGGAGGCACCTCATTTAACACATACTAACTCAAACAGGCAAAGGC TCTGA
Protein sequence (LotjaGi1g1v0400600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIIGDALRQAFMPKREYESLREEEKAWGKLQRPVTVAFVAVICVAIFVCTVISLRIVFPGSDARRPFCVDRRIQPLQIG AKGGGSDSSDLFPGAFYLTDQEMADYYWMVVFVPSMVLFLLSAVYLVAGITVAYSAPTRHGCLKVVENNYCASRRGGVRC LSILNLIFAIIFGLLALFLGSSLLTFMSNCSTPLFWCYEVASWGFVVLYGGTAFFLRRKAAVILDEGSFSSRNLGLEMLE ANPLEVTPEVERRVNEGFKTWMGSSLLSSDEEDEPDSYEEAPHLTHTNSNRQRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 34 | 34 | - | – | |
| PANTHER | 1 | 293 | 293 | 8.2E-163 | – | |
| Phobius | 35 | 59 | 25 | - | – | |
| TMHMM | 37 | 59 | 23 | - | – | |
| Phobius | 60 | 105 | 46 | - | – | |
| Phobius | 106 | 134 | 29 | - | – | |
| TMHMM | 107 | 129 | 23 | - | – | |
| Phobius | 135 | 162 | 28 | - | – | |
| TMHMM | 162 | 184 | 23 | - | – | |
| Phobius | 163 | 187 | 25 | - | – | |
| Phobius | 188 | 192 | 5 | - | – | |
| Phobius | 193 | 216 | 24 | - | – | |
| TMHMM | 194 | 216 | 23 | - | – | |
| Phobius | 217 | 294 | 78 | - | – | |
| MobiDBLite | 266 | 294 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0400600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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