Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0401500 |
| Transcript ID | LotjaGi1g1v0401500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tesmin/TSO1-like CXC domain protein; TAIR: AT4G29000.1 Tesmin/TSO1-like CXC domain-containing protein; Swiss-Prot: sp|Q9SZD1|TCX5_ARATH Protein tesmin/TSO1-like CXC 5; TrEMBL-Plants: tr|K7KIV6|K7KIV6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0401500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:88946463..88951750) extracted from Lotus japonicus Gifu genome v1.2.
TTCCCAATCCAACGGTTACAATACACTTAAATCTCCTCTATAAAATCCCCACTGTCAAATTTAACCTTTCACTTTTTCAA TTCAATTTTCAAATCTCGAGAGCGCAAGAGAGGTGGCACTTGTACTACCACCACTACTGCCGCTACCTACCACGGCGGAG TTTTCTTCCGGCAACCGTTTTTCCGCGACGGTGCTTCCGCTACTCGAAATTTCAACTTCGTTACTCTCTCTCTCTCTCTC CGTCGATTCCTTGCTTGTTTCTATTAATTGCAATCCGTAACGCTCGCGAATTTATGGTCGCACTCTGAGCCTGACGCCAC TCCGTTTCGTTGAAGATTTTCTCCATGCGTTTCAATTACTCCATTTGAAACGGCGAATCGTGAAGAGTGTGTGTGTGTGT GAGTGTGACATTGTGATTTGGAAGTTCAGATCAATTTTGATGGAGCAGTGCGAAACGACGCTGAGTTTAGCTCCTCCTCG GAAATCGGCCAGGCAATTGGATTTCGCCGCCGTATGTGGAGGTCCGGCTCACCTCAAACTGCCACCGCCGCCGCCGCCGG TGGCGCAGTTACTGCTTCCATCGATTCATCATCTGCCGCCGTCGCATTTGGAATTGGAATTGCATCCACCAGGGCAACGG CCGTGGTTTTATTCACCGCCGCAGGTGCAACAGCAAAGAACAATGCAGTCTCCGGTGATGGCACAATTGCAGGCACCGCC GCCACAGCTGGTTTCGCCGGTTCGGCTATTACCGCACCCGACGCCGGTGAAGAGGTTGCAAGCGATGTAAGTATTCTCAA TTGAAAGTGTTCCGATATGCGTTAAGAGCGTTGAATTGGATATATGTTTTGAATTTTAGCTTCTATTTGAAGAGATTGTA ATGTAGAGATAGAGTATTAGTGCTTCAAACCCTGGAATGCATACTGGTTGTAGTGAATAATTCGTTGCGCATGTTCTAAA TGCCTGTTTGCTTGTATCTGAATGCAATTTGGGGTTCATCATTATCATTCCTAGGTTCATTTACTAATCTGAGTTTTGAG TAAAATGTGAAACAGTAATGTGTGCATTTGGGAAGTGAAGTGTCATAGTTTTGGCACTTGACTGTTTAATCTCTTACTCT CTATGATTGAGTTTCGCTCACACGTTGAACTCTGGTTCTGATTTGCATTCTACTATGTTTGGATGCATGTGTTTTCCTTC AGGAGGGAGGAGTCTCCTAGATCACATCCTCGAAATAATGTGGAGTTAAAAGACAGCACTCCAAAGAAACAAAAACAATG TAACTGCAAAAATTCTCGATGCCTCAAATTGTGAGTCGAAGAGCTGCCCCGTGTGGAAATGTTTCATCAGGAGTTTTTTA TCACATGACTATGCTATATCTAAACATCTTACATACATCCCCCCTATCTCAGTCTAACTAGAGAAAGCTAATTTTGCAAA TGCTAGGTACTGCGAGTGCTTTGCTGCTGGAATCTACTGTGATGGCTGCAACTGTCTAAATTGTCACAATAATGTGGATA ATGAAGCTGCCAGACAGGAGGCTGTTGGAATAACATTGGAACGCAATCCGAATGCTTTCAAACCAAAAATCGCTAGCAGT CCACAAGAACCACGGTATTCTAAGGTTTGTAATTCAATTCTTCTCCCTCAAGCATGTATAATTTGTTTTGGCTCAAGTCA TTTGACTTTTGAGCCAATGTCTTGTGATTATAAGTATAACTATTCTGGGTTTACCTGATATTTTCGCTAACTTTTGTTAT ATTATCATGTGTTGAACAAACTCAGGTAGATGTACCTGAAATTCAAGTAATAGGAAAGCACAATAAAGGATGTCACTGCA AGAAATCAGGTTGTCTTAAGAAGTATTGTGAGTGCTTCCAAGCCAATATCCTCTGCTCTGAAAATTGTAAATGCATGGAT TGCAAGAATTCTGAAGGAAGTACTGAAAGAAGGGCATTTTTTCATGAAGAGTATAATCTAGTTCCGCCCAAACAGGCAGT TAATGCTGTCACTAGTGGAGCTGTTAGGTCCTTCAGCTATGGACCTCACATAACACCCAAGAAAAGAAAAATCCAGGAAA TATTTTCTGGCAAATCAGCTGTAGATCAAACTGTTAGCATGACTTCTCAATACCAACAGGTGCTTTCTTCTATGCATTCT AGATAGGATTAACTTGGACTTGTTTCGATAATCATTTAAGTATTCTTTATGTGGTTGATTCATTATGTTGAAATTTGGAT TGGAAAAATCACATGAGTCCAGTAAGGCAATAACTTTGTCATATAATTATTGAAGACTGTGTATCAACTTGTCAGTTCTA GTTTTATCCCTTGGAGCCCTCAATTTCCTTGTTATTTTCCTGTTAGTTTAGTTATCATTGTCCATTCCCTCCCCTTCTCT GACATCCAAACTTCACATAATATCTGTCTTTGAATTGAATTTTTAGCAGGAAATTGATCCTATAGCTTCATCACCCTCAT CTTTGTCAGCTTCCGTTGTTTCTGATGCCAACACAAGAACTTCAGGGCCTTCAAGTTCTACATACAGGTGTGTGAGTTTT TTTTATTATTATTTGATGAACTTATCTTATGTTTTAAATATAAATATAAAGAAAATTGAACTAACAATAACTCATGCTAT AGGTCCATTTTGGCGGATGTCATTCAGACACAGAATGTGAAGAATCTCTGTTCACTTTTTGTTGTTCTCTCTGGAGTAGC TGCTAAGACAAATGCAGGTTTTGACCAATACACGGGTGTATACTATATACGCCTTGCTTATAATAATTTGATTATCTACT GTGTGGTGAATGATTATGAATACTTTTTGTTTTCATATACATTCTTACTGAACTTTATGCTGTTAGGGCATTTATTTAAT GTAATCATCACTTTTATTTTATTTTTCCACTTTATTTGTCCTCTTACATACATACACACGTTGTACATATGTTGCAGTCA ATATTTTTGTCTTTGTTTGCTACTCCTCCCATATTTCTTATCATATTTGGGATTGTGATTATTTTCAACTTTTCAGAAGT GAGAAACAAATTCGATTGGCAAACAGAGACTACGGAATCTGAAGCACTGCAAGACACTAGAGATGTTCACAATCCTGTTG GTGACAAGATGTCCACAGATGCAGTTGATATTCACCATTATAATAGGCCATTGTCTCCAGAAACACGTGCATTAATGTGT GATGAACAAGATGTGATTTTTTCTGGTAATGGTTCTGCAAATGGAGTGCCATGTGACGGTCCTTGTCAAAACATGATTGA AAAATCATCTAATTCTGGTGGATGCACTGATGTTTATGAAGAGCAGGAAAGGTTTGTTCTGACCAAGTTCTGGGATGTTC TTCGTGGACTCATTACTCTTGGTAGCATAAAAGGTGAGGCTTTAATGTTATGATGTCTAGTCTTCACACTTAAAACTTTG TTGGGGGCAAAGTTAACCTGAGTTTTCCTGTCCTAAAGTAAACTTTTATGTTCTATGAATAGTCGTTTTGGAAAGTCCCA TTTGAAATGACTGACAAATATAAATTTAACTGGGTTTTATGAAGAAGTAAACAATTAACTAATATAGCTCTCTTGCTTTA TAAAAATAGACTGTCTATTTCTGCTCATCTCCTTGAGAACTCGAATTCCTTTTAAACCTGTGTAATGGATGGTATTTGTG AACTTATATTGTGTAGGAGGCATAGTAATTCACCTGACATTGTAGTATACCCATACCTAACTTCTTTATGATGCATTTCT ACCTTGTAGCTGCTTGTCTTAGGTTACCTATGACAACATGCCTCATCTAATTCATAAAATTAAGAATGTCATGTTAGAAC ATTAAAATGGTGAAGCCATATATTCCCCCATAGCAGTGCCACCTTGTTCAGCTTAAATCTGAATCAAGAAACAGTTATGG TCACCAAGGAAGAAAATGGTGATAAATCTGGCTTCATCGTTAGTATGCTTGTAGAAATCAGCTGAGAAGAGTATAACTTT ATCTTAAAAATCATTTGAAAGAACAAGGAATAGAATGAGAAATATATAAATACCAGATAGCCCTAGTTCCATAGCTCACA TGATGATTAAATGGTTACATTTTGCATTAGTGGATTATCTAATTGTTTATCCCGAACAACGTTTTGTATGTTCCTGACTG ATCAATTAGGATGCACTTTACTTTTCTTTTTATTATAATTATTTATTATTTTGGGGGTGGTGTGGGGTTTGACTCCCTGA AATTCAGTTTCCTGTGTTCACCTTTAGCTATATGTTTGATTAGATTCCATTATATTTTGAAATTATTAGCTTGACCTAAA AGTAGCATGAACAGTTTGTTAAGATAAACAATTGAGAGAATAGTAATCTGGGTTATGAGATTCTCTCATTCCTCGAGCTT CAATTAAGATTTGTTAAGAATTTCACTCATTTTGGTTAACGAGTATTAACTATCTTGTAGAAACAGCATGCTCTTCATTA GCCAGGAAAGATGTGGGAATGACGAAAGAACCTGCAGAGAATGGCCATAGTGGAGCTGAAACTGACACAGGGTGTGAGAA GGGAATTCACAGCAACTGCACTTCAAATTGCCCCATCTCAGAGGTTACTGAAATATCTCGGACAATCTATTCAATAACTG ATGGACATGGTAATAAAGATCTTTCATGGAGGTCGCTTGCAAATTGGAATAACAGAGGTGATAAAATCTGATGTCTGGTG AAAGACTTATTACCTGACTGACTGGTAATGAAAATGGTTCCCAGTCAGTGTGCAATCTGGAATTTCTGCAGCTAGTAATT GCATGTTTTGAAATTCTTATGCAATTGATTCTAAAGCTAGAATCAATTCTACTGAGAAGGTTCTATAAGTTGCTTTTTAG TTTTAGAATTGATTATGAGAAAAGAGAAGAAGCTTGCTCATCTAAAAAACACCTAGCTGGAACCTCATCTTTCCTAGCGT TGAATTGAAATCTCAACACAATTAAGTCCTGGCCTGGACACAGGTCACGTTTGATGTTTACTATTACTATATACGAAGGA ATCGAGACGTTCCTATGTGTTGAATGCAATAAAAGCAAGTTTAATAGTGAAATTGACATCAGTTGCAAACTTTTGGTAAT GATAAAAAGTTGAAACAAACAAGGTTTGAATCAGTTTGTGACCAAGTATAACAAAAGTGATGAAGACTTAATTATAACGA TTTTTAAAGGTGGGGGACTGAATTTGCTAATCGAGGACCAAAATTTTGCAACTGATGTCAATTTCACTATTAAACTTGCT TTTATTCC
CDS sequence (LotjaGi1g1v0401500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCAGTGCGAAACGACGCTGAGTTTAGCTCCTCCTCGGAAATCGGCCAGGCAATTGGATTTCGCCGCCGTATGTGG AGGTCCGGCTCACCTCAAACTGCCACCGCCGCCGCCGCCGGTGGCGCAGTTACTGCTTCCATCGATTCATCATCTGCCGC CGTCGCATTTGGAATTGGAATTGCATCCACCAGGGCAACGGCCGTGGTTTTATTCACCGCCGCAGGTGCAACAGCAAAGA ACAATGCAGTCTCCGGTGATGGCACAATTGCAGGCACCGCCGCCACAGCTGGTTTCGCCGGTTCGGCTATTACCGCACCC GACGCCGGTGAAGAGGTTGCAAGCGATGAGGGAGGAGTCTCCTAGATCACATCCTCGAAATAATGTGGAGTTAAAAGACA GCACTCCAAAGAAACAAAAACAATGTAACTGCAAAAATTCTCGATGCCTCAAATTGTACTGCGAGTGCTTTGCTGCTGGA ATCTACTGTGATGGCTGCAACTGTCTAAATTGTCACAATAATGTGGATAATGAAGCTGCCAGACAGGAGGCTGTTGGAAT AACATTGGAACGCAATCCGAATGCTTTCAAACCAAAAATCGCTAGCAGTCCACAAGAACCACGGTATTCTAAGGTAGATG TACCTGAAATTCAAGTAATAGGAAAGCACAATAAAGGATGTCACTGCAAGAAATCAGGTTGTCTTAAGAAGTATTGTGAG TGCTTCCAAGCCAATATCCTCTGCTCTGAAAATTGTAAATGCATGGATTGCAAGAATTCTGAAGGAAGTACTGAAAGAAG GGCATTTTTTCATGAAGAGTATAATCTAGTTCCGCCCAAACAGGCAGTTAATGCTGTCACTAGTGGAGCTGTTAGGTCCT TCAGCTATGGACCTCACATAACACCCAAGAAAAGAAAAATCCAGGAAATATTTTCTGGCAAATCAGCTGTAGATCAAACT GTTAGCATGACTTCTCAATACCAACAGGAAATTGATCCTATAGCTTCATCACCCTCATCTTTGTCAGCTTCCGTTGTTTC TGATGCCAACACAAGAACTTCAGGGCCTTCAAGTTCTACATACAGGTCCATTTTGGCGGATGTCATTCAGACACAGAATG TGAAGAATCTCTGTTCACTTTTTGTTGTTCTCTCTGGAGTAGCTGCTAAGACAAATGCAGAAGTGAGAAACAAATTCGAT TGGCAAACAGAGACTACGGAATCTGAAGCACTGCAAGACACTAGAGATGTTCACAATCCTGTTGGTGACAAGATGTCCAC AGATGCAGTTGATATTCACCATTATAATAGGCCATTGTCTCCAGAAACACGTGCATTAATGTGTGATGAACAAGATGTGA TTTTTTCTGGTAATGGTTCTGCAAATGGAGTGCCATGTGACGGTCCTTGTCAAAACATGATTGAAAAATCATCTAATTCT GGTGGATGCACTGATGTTTATGAAGAGCAGGAAAGGTTTGTTCTGACCAAGTTCTGGGATGTTCTTCGTGGACTCATTAC TCTTGGTAGCATAAAAGAAACAGCATGCTCTTCATTAGCCAGGAAAGATGTGGGAATGACGAAAGAACCTGCAGAGAATG GCCATAGTGGAGCTGAAACTGACACAGGGTGTGAGAAGGGAATTCACAGCAACTGCACTTCAAATTGCCCCATCTCAGAG GTTACTGAAATATCTCGGACAATCTATTCAATAACTGATGGACATGGTAATAAAGATCTTTCATGGAGGTCGCTTGCAAA TTGGAATAACAGAGGTGATAAAATCTGA
Protein sequence (LotjaGi1g1v0401500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEQCETTLSLAPPRKSARQLDFAAVCGGPAHLKLPPPPPPVAQLLLPSIHHLPPSHLELELHPPGQRPWFYSPPQVQQQR TMQSPVMAQLQAPPPQLVSPVRLLPHPTPVKRLQAMREESPRSHPRNNVELKDSTPKKQKQCNCKNSRCLKLYCECFAAG IYCDGCNCLNCHNNVDNEAARQEAVGITLERNPNAFKPKIASSPQEPRYSKVDVPEIQVIGKHNKGCHCKKSGCLKKYCE CFQANILCSENCKCMDCKNSEGSTERRAFFHEEYNLVPPKQAVNAVTSGAVRSFSYGPHITPKKRKIQEIFSGKSAVDQT VSMTSQYQQEIDPIASSPSSLSASVVSDANTRTSGPSSSTYRSILADVIQTQNVKNLCSLFVVLSGVAAKTNAEVRNKFD WQTETTESEALQDTRDVHNPVGDKMSTDAVDIHHYNRPLSPETRALMCDEQDVIFSGNGSANGVPCDGPCQNMIEKSSNS GGCTDVYEEQERFVLTKFWDVLRGLITLGSIKETACSSLARKDVGMTKEPAENGHSGAETDTGCEKGIHSNCTSNCPISE VTEISRTIYSITDGHGNKDLSWRSLANWNNRGDKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 581 | 581 | 8.1E-273 | – | |
| PANTHER | 1 | 581 | 581 | 8.1E-273 | ||
| MobiDBLite | 114 | 136 | 23 | - | – | |
| SMART | 137 | 177 | 41 | 2.0E-17 | ||
| ProSiteProfiles | 138 | 262 | 125 | 35.845 | ||
| Pfam | 139 | 174 | 36 | 1.3E-11 | ||
| SMART | 222 | 263 | 42 | 1.0E-19 | ||
| Pfam | 225 | 260 | 36 | 1.1E-12 | ||
| MobiDBLite | 406 | 429 | 24 | - | – | |
| MobiDBLite | 409 | 429 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0401500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…