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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR005172
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 18 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.616s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0213049.1
n.a. PREDICTED: histone-lysine N-methyltransferase EZA1-like [Glycine max] gi|356501867|ref|XP_003519745.1| chr0 107517024 107521993 +
2 domain predictions
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Lj1g3v0114040.1
n.a. transcription factor CPP [Lotus japonicus] gi|193237591|dbj|BAG50072.1| chr1 1272894 1277898 -
3 domain predictions
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Lj1g3v1787840.1
n.a. PREDICTED: CRC domain-containing protein TSO1-like [Fragaria vesca subsp]. vesca] gi|470137980|ref|XP_004304737.1| chr1 21272843 21274098 +
2 domain predictions
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Lj1g3v2063230.2
n.a. Lin-54-like protein [Medicago truncatula] gi|358344677|ref|XP_003636414.1| chr1 24306501 24311413 -
3 domain predictions
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Lj1g3v2063230.3
n.a. Lin-54-like protein [Medicago truncatula] gi|358344677|ref|XP_003636414.1| chr1 24306501 24311413 -
3 domain predictions
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Lj4g3v3061530.1
n.a. PREDICTED: protein tesmin/TSO1-like CXC 5-like [Cicer arietinum] gi|502138551|ref|XP_004503448.1| chr4 40830581 40836577 +
3 domain predictions
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Lj5g3v0539820.1
n.a. cysteine-rich polycomb-like protein [Lotus japonicus] gi|40241245|emb|CAF02297.1| chr5 6349953 6355778 +
3 domain predictions
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Lj5g3v2045560.1
n.a. PREDICTED: protein tesmin/TSO1-like CXC 2-like [Cicer arietinum] gi|502159039|ref|XP_004511373.1| chr5 29208185 29212152 -
3 domain predictions
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LotjaGi1g1v0401500.1
n.a. Tesmin/TSO1-like CXC domain protein; TAIR: AT4G29000.1 Tesmin/TSO1-like CXC domain-containing protein; Swiss-Prot: sp|Q9SZD1|TCX5_ARATH Protein tesmin/TSO1-like CXC 5; TrEMBL-Plants: tr|K7KIV6|K7KIV6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0401500 LjG1.1_chr1 88946463 88951750 -
3 domain predictions
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LotjaGi2g1v0010500.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT4G02020.1 SET domain-containing protein; Swiss-Prot: sp|Q8S4P4|EZ3_MAIZE Histone-lysine N-methyltransferase EZ3; TrEMBL-Plants: tr|B9RNE0|B9RNE0_RICCO Histone-lysine N-methyltransferase; Found in the gene: LotjaGi2g1v0010500 LjG1.1_chr2 3833862 3839413 -
2 domain predictions
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LotjaGi2g1v0217800.1
n.a. Tesmin/TSO1-like CXC domain protein; TAIR: AT4G29000.1 Tesmin/TSO1-like CXC domain-containing protein; Swiss-Prot: sp|Q9SZD1|TCX5_ARATH Protein tesmin/TSO1-like CXC 5; TrEMBL-Plants: tr|V7C3Y5|V7C3Y5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0217800 LjG1.1_chr2 67236695 67246404 +
3 domain predictions
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LotjaGi2g1v0217800.2
n.a. Tesmin/TSO1-like CXC domain protein; TAIR: AT4G29000.1 Tesmin/TSO1-like CXC domain-containing protein; Swiss-Prot: sp|Q9SZD1|TCX5_ARATH Protein tesmin/TSO1-like CXC 5; TrEMBL-Plants: tr|K7LET3|K7LET3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0217800 LjG1.1_chr2 67236720 67246166 +
3 domain predictions
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LotjaGi2g1v0269400_LC.1
n.a. Tesmin/TSO1-like CXC domain-containing protein; TAIR: AT3G04850.1 Tesmin/TSO1-like CXC domain-containing protein; Swiss-Prot: sp|A1Z9E2|LIN54_DROME Protein lin-54 homolog; TrEMBL-Plants: tr|I3SPT3|I3SPT3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0269400_LC LjG1.1_chr2 73954250 73955215 +
3 domain predictions
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LotjaGi2g1v0454200.1
n.a. Tesmin/TSO1-like CXC domain protein; TAIR: AT4G14770.1 TESMIN/TSO1-like CXC 2; Swiss-Prot: sp|F4JIF5|TCX2_ARATH Protein tesmin/TSO1-like CXC 2; TrEMBL-Plants: tr|B3IX45|B3IX45_LOTJA Transcription factor CPP; Found in the gene: LotjaGi2g1v0454200 LjG1.1_chr2 94726577 94732399 +
3 domain predictions
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LotjaGi4g1v0448200.1
n.a. Tesmin/TSO1-like CXC domain protein; TAIR: AT4G29000.1 Tesmin/TSO1-like CXC domain-containing protein; Swiss-Prot: sp|Q9SZD1|TCX5_ARATH Protein tesmin/TSO1-like CXC 5; TrEMBL-Plants: tr|A0A0R0K5H4|A0A0R0K5H4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0448200 LjG1.1_chr4 82046438 82052498 +
3 domain predictions
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LotjaGi4g1v0448200.2
n.a. Tesmin/TSO1-like CXC domain protein; TAIR: AT4G29000.1 Tesmin/TSO1-like CXC domain-containing protein; Swiss-Prot: sp|Q9SZD1|TCX5_ARATH Protein tesmin/TSO1-like CXC 5; TrEMBL-Plants: tr|A0A0L9VSR5|A0A0L9VSR5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0448200 LjG1.1_chr4 82046476 82052554 +
3 domain predictions
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LotjaGi5g1v0061200.1
n.a. Tesmin/TSO1-like CXC domain-containing protein; TAIR: AT4G14770.1 TESMIN/TSO1-like CXC 2; Swiss-Prot: sp|F4JIF5|TCX2_ARATH Protein tesmin/TSO1-like CXC 2; TrEMBL-Plants: tr|Q705X1|Q705X1_LOTJA Cysteine-rich polycomb-like protein; Found in the gene: LotjaGi5g1v0061200 LjG1.1_chr5 10224443 10230574 +
3 domain predictions
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LotjaGi5g1v0311500_LC.1
n.a. Tesmin/TSO1-like CXC domain protein; TAIR: AT4G14770.1 TESMIN/TSO1-like CXC 2; Swiss-Prot: sp|F4JIF5|TCX2_ARATH Protein tesmin/TSO1-like CXC 2; TrEMBL-Plants: tr|V7BBQ7|V7BBQ7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0311500_LC LjG1.1_chr5 62945829 62951949 -
3 domain predictions
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