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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0404600 |
| Transcript ID | LotjaGi1g1v0404600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Carotenoid cleavage dioxygenase; TAIR: AT3G63520.1 carotenoid cleavage dioxygenase 1; Swiss-Prot: sp|Q84KG5|CCD_CROSA Carotenoid 9,10(9',10')-cleavage dioxygenase; TrEMBL-Plants: tr|K7KTX6|K7KTX6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0404600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:89346539..89352004) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTTCTTACATGTAAGTAACCATACTATTAATATGTACACGATTTGAGGCACTACTTGTGTACAAGATTTGTTTTGCT TTTCCTTCCTTTCTGCTCCCATGGCCATTTCATATAATAATGCATTTCTAGTGAATTGCTCCATTCACAAAAGACCCCTG TATGTCTCAAACAATAATTTTGGTGACTACATCATTCCACTTTTCTCTGCTTTCAAGGTAATTAACCACCTCTCACTCTT TGTCAGAAGTTCAATTTGTTTTTTTCGAAAGGAGAATGATATTTATCAGAAAAAATTCTGAGAACATCTTCCATTCCCTG AGCAGCCAATGATCATGAAAGCTATGCCTGAAGTCTTCTTGCAAATTGATGTTCCAAAAACTATGAAAAACAGTGCGGCT AAATTAGTTGATGCTTTTGTGGATTCATTCTTTGAATTCATTGACAAGCCTTTGCTTCCATCTCAGGTAAATAAATGCTC TTCTTCTCCACTTTGACTATGTTTGCACAAAGCCATGGCACACACGCGCTATTAAAATTTAAAAGTTTAGCTGCGAGTTA TTGATTTTAAAGTCTTAATCAATTCAGCTTCTGATGATCAGTGACAGAATTTAAGGAAAAATAAGTTGATTCAAACATGT GATAAATCGTGCTACATTATTTTGCAGAGTAACTATGCTCCGGTGGAGGAGTTGGAGGAAGCCATAGTTATGAGCAGCAT CCAAGGACACATTCCAGATGGTTTTCCCGAGGGTGTATACATTAGAAATGGTGAGGATTTCTTTTCAGTTTAATTTATTA TATTTCTGATATTTACACAACACTATTTCTTGTTGATCATATGTGAACAAACTTCCTATATATGAGTCAACCTGACATGT TGTAAGTATCTGTTTGTCCTTATTGATCACTTCAAAGGTAAATAGACGCCATAAACTCCATTACCGAGAATGTATTAACA GAGGAAACAATGAAAAAGCAACAAAAACACATAGTAAATGTGGAATTTTGAGCTGGATGGTCACTTTCTTTAAAGGGTAT ATCTATCCAAAAACATAAAAGCATATGCTATCATCAAATCAAGGTACAATAACACACAAAATACAAGTCAAGCTAGTTTT TTACTTGATATTTATTTTTACAGGCCCAAATCCACTATTTGGAGGACTGAAATCAACAAATTCTGTTTTTGGGAGGTCAA GTCACATTTGGGTGGAAGGAGAAGGAATGCTTCATGCCTTGTATTTTAAGAAATCAAGTCATGGGAATTGGACTGTCCTC TACAACAACAAGCATGTTGAGACAGAAACATACAAGCTTGAAAAACAAAGAAACAAACCATCGTTTCTTCCAGCAATTGA AGGCGATTCGCCAGCCATTTTATTCGCCTATCTCCTAAATTGGGTCAGCTAATTATTAGGCTTAAATGCATTTGTTGCCC CTGATGTATCGCTAATGTGCAAAAGACAACCCGACTCTTTAATAAAAACCTTGAAAATTTGTAGGAGAGGTTCGAACCCA GGACCTCGTAGTGGCAAAACACACACATTACCAGTTGAGCTACATGGAGAATTGTTTAATTTAACAACCGGATTTTATTT ATTTCATATATCTTCTTCATCTTCTTTCTTCTTCCCTTACCAATCAAACTCTAACCTCACCATTGTTGCATCTGAGCTTG TGCACTTCGATTCTGACTTGCCCCATTACAAAACCAAAGATGGGGTGTGCAGAGATCCTTCTGGCAATGGCAGAATCGTT TCACCCATATTGATGTGGGTAGAAGCTCTTGACCTCATCTTTCAGAAGCTTTCAAAATCAAATTTCAATTTTTCCAAGGT TGCAGGTGTTTTTGGGAGTGGACAACAACATGGTAGTGTTTATTGGAAGAAGGCTAGTTCTCAGATTTATTCATCATTGG ATGCTAAGAAGCCATTGTTAGGTCAGCTTGAAAGTGCCTTTTCCTTTAGGGAGTCCCCAATCGGGATGGATTGTAGCACC ACTAAACACTGTTAGGGAAATCGTTGGGGCGTGAAGGGTGTTCGCCACCATGGTGTCGTCGTGCCGGGATAGTGGCGACG ACGGTGGCTGGTGGGGCTGCGGAGGAAGGAGGTTCAATCTGGGTTGGGCCGTTGGGGTTAGGGATTGGTAAGGGAAGAAG ATGAATGATGAGGAAGAAGATGAAGAAGATATATGAAATAAATAAAATTCTGTTGTCAAATATATCAATTGTCCATGTAG CTCAATTGGTAATGTGTGTGTTTTGCCACTATGAGGTCCTGGGTTCGAACCTCTCCTACAAATTTTCAAGGTTTTTATTT TCATTTAATGACGTGGCATCTGAGGAAATAAAAGAAAAATAAAAAAAGAAAATCCACGTCAGCCTCTCTGTTAGTTTTTT AACGTCAATCTGACGGAGGGGCATTCGCTATACTTTCTCAAAACATTGAGGGTACAAACGTCGACAAAAAAAGAGTCGGG TTGTCTTTTGCACATTGGCGATACATCAGGGGCAACAAATGCATTTAAGCCTAATTATTACTAACTTAATGCTTAACTAG TACATTAATCAAAATAATAAAAAATAACCTTGGTTGCAAGGAATAATTATAAAAATGTTATTCATTTAGTTACATCTTTG TGGATTTAACAGTTGCGATTTGGCAAAGCAAACAAATACATTAGCAACACAAATATCATTGAGCATTCAGGGAAGTTTTA CTCTGTTGCTGAAAGTCACATCCCACAAGAGATTGATATCTTCACTCTGAAAGCTTCAAACAATTGGGATGTCAATGGAG CCTGGAACCGACCTTTTACAAGCCATCCAAAGGTTTTTCTTTAGCTAAAGTATTTGCAAATCAAAAGTTATTCTCTTTTA ACAATCTACAATTGATTTCTCAATCTCAAATTGTTTTGTTGTGACATCACAGAAAGTTCCAGGTACAGGGGAACTAGTTA CATTTGGGGTGGCACCAACTAAACCTTTTGCTGTTGTTGGAATTATTTCTGGTATGCTCTGCATTAAACTAGAAAACCAG AAATAAGTGTTTTCGGGCTTGTTTGATTTCTATTTTAGTTTTCTGTTTTTAAAAATAGATTTCAGAAACGATTTTTAAAA TATGTTTCTCAAATAGAAAAGACTGTTTGAATAACATGTTTTACAACATTAAAAAACTCAAATTTGAAAAGTAAAAATGA AAACAAAAATCATGTCTAAGATTTTGAAAACAGGTAGGTTATGACAAACAAATTTTTAATTTTTCAATTTCTAAAAACAA AAACAATTTTCAAAGACTGTAAATAAACATGAACTTAATTACTTGCTTCAAGTGTTGCATAGTGTCTACAAGACTATGAA TAACAGTCTTCTTTTCCTCTCCTTTTTCAGCTGATGGGAAAAATTTAATTCATAAAGTTGATCTCAAACTAAACAGGTGC AGCCTTTGCCATGACATAGGTGTTACAGAGAGGTAGATTTCTTCACAATTGTACTGGACTGGAGTTATTATCTAAACTAT TTACCTAGGAGTACATATCATGTATTTTTCTGTGGGCTTTGGTTTTGTAGGTACATTGTGATCATGGATTTTCCACTAAC CATTGATCTAAACAGACTTCTTAGAGGAGGCTCGTAAGTTCATATTCTTTGTTTAAGGTAACTTTAAACTAGGATAAAAA TTTACAAAATTATGTGACATAGCACATATTCTCTACATGTAGATTAATAAAGTATACTAAGGAGGATATTGCAAGGATTG GGGTAATGCCACGCTATGGAAATGCCAACTCAATCAAATGGTTTAAGGTGGAGCCTAATTGCACATTCCACATAATCAAT TCTTTTGAGGATGGTCATGAGGTGAGTTATCTAAAAGTAACAGTAAGATACTAAAAAAATCTGAGATATATGAACAAAAG GACTGCACTAAAAATTTTGAAAATAATTGTGTTCTTGTGTATAACAGGTTGTAGTGAGGGGATGCAGAGCTCTTGATTCA ATTATTCCTGAACGTGACCCAAATTTGAAGGAATTTGAGTGGTTATCTCGTTGTTATGAATGGAGATTGAATATGCAAAC TGGGGAGGTTAAGGAGAAAGATCTTTGTGGAACAACAAAAGTTTATATGGATTTTCCTATGATCAATGAAAACTTCATAG GTATTAAGAATAGATATGCATACACACAAGTAGTTGATCCCTCATCAAGTACTACTCGAGGTAACAACATAGAAGAAAAT TATTCTTTTTCTTGAGAATTGTAAGTGTCTTTCATATTTCACATATAAATGTTGTATAACTTGGTTTTGTCATTGGATTT ATTAGATGCACCAAAATATGGAGGTTTAGCAAAGCTCTACTTTGGAGAATCATGTGCAAAGTTCTCAACGGTAAAATAGT GCTATGACAATCCTTTTTTTCTCATCATTCTTTCGCGAGTTCTTCTAGAGGGACATATGGATTCTCGTGACATCCTGCTG ATACACCATTTAGCAGCGATTAAAACACCTGTTAAATTATGTGTCGCAAGAGTTTGGAGGGTTTATGTATGTTTTTGAAT CACTTTCATTCTTTGGCTGCGATAACTATCACAATTTGAATTTTGTGAAACAGAGGGACACAAAGCAACCTGAAGAACCA ATAAAAGTTGAATACCACATGTTTGAGAAGAATGTATTTTGTAGTGGGGCAGCATTTGTGCCTAAAGATGGGGGTGTTGA AGAAGATGATGGTTGGGTCATCACTTTTGTTCACAATGAAGATACCAACACATCTGAAGTGAGTTGATATTACTCCTTAG CATACATTAGTATTGTTGAAAGTTAGGATAATTTTTACACATTCATTAACTACCCTTTATTCACAATTTTTTTTTAGGTT CGTGTAATTGACACGAAGAAGTTTTCTAGTGAGCCAGTCGCCAAAATCACATTGCCTTGTAGAGTTCCATATGGGTTTCA TGGAGCTTTCATGTCAATCTCATTCAAGGCTCAATAGGCTGTCCCAACAATCGAATCGCGGTAAATCATTAGTTATCGAT GTAACTATAGTTGTCAGTAAATGATCTGTTTCTTGCTGTGTGTGCGGAATGGTCCTATCGTTAGCTGATTGTGATAAAGG AGGATGTGGTTGACGTTGATAAACTTGATGTAGAAGTGTAAAGTAATTTATCGTATTTGAAATATACAATTATAGGATTT TTGTTGTTGTCAAGTTTAACTATAGGTTATAAGAAGTAACTCAACTATTTTTTTTATATAAGCCAATTAATTGTATTTAA AGATAGCACAAGAGGGCTAAACCCAAATACATTTTCTTTTTGTTCATGTTACAATGAAAATAAAAGGCCGGACAGCCCAA CCACAAAGGGGATTAAAGAGGTAATTCAACTAAAGATAATCATATTATTTTCATTTTATGGGCTCAGAAGCCGATGGGCC TAATTAATATCTGATTGGACATGAAG
CDS sequence (LotjaGi1g1v0404600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATTTCATATAATAATGCATTTCTAGTGAATTGCTCCATTCACAAAAGACCCCTGTATGTCTCAAACAATAATTT TGGTGACTACATCATTCCACTTTTCTCTGCTTTCAAGCCAATGATCATGAAAGCTATGCCTGAAGTCTTCTTGCAAATTG ATGTTCCAAAAACTATGAAAAACAGTGCGGCTAAATTAGTTGATGCTTTTGTGGATTCATTCTTTGAATTCATTGACAAG CCTTTGCTTCCATCTCAGAGTAACTATGCTCCGGTGGAGGAGTTGGAGGAAGCCATAGTTATGAGCAGCATCCAAGGACA CATTCCAGATGGTTTTCCCGAGGGTGTATACATTAGAAATGGCCCAAATCCACTATTTGGAGGACTGAAATCAACAAATT CTGTTTTTGGGAGGTCAAGTCACATTTGGGTGGAAGGAGAAGGAATGCTTCATGCCTTGTATTTTAAGAAATCAAGTCAT GGGAATTGGACTGTCCTCTACAACAACAAGCATGTTGAGACAGAAACATACAAGCTTGAAAAACAAAGAAACAAACCATC GTTTCTTCCAGCAATTGAAGGCGATTCGCCAGCCATTTTATTCGCCTATCTCCTAAATTGGTTGCGATTTGGCAAAGCAA ACAAATACATTAGCAACACAAATATCATTGAGCATTCAGGGAAGTTTTACTCTGTTGCTGAAAGTCACATCCCACAAGAG ATTGATATCTTCACTCTGAAAGCTTCAAACAATTGGGATGTCAATGGAGCCTGGAACCGACCTTTTACAAGCCATCCAAA GAAAGTTCCAGGTACAGGGGAACTAGTTACATTTGGGGTGGCACCAACTAAACCTTTTGCTGTTGTTGGAATTATTTCTG CTGATGGGAAAAATTTAATTCATAAAGTTGATCTCAAACTAAACAGGTGCAGCCTTTGCCATGACATAGGTGTTACAGAG AGGTACATTGTGATCATGGATTTTCCACTAACCATTGATCTAAACAGACTTCTTAGAGGAGGCTCATTAATAAAGTATAC TAAGGAGGATATTGCAAGGATTGGGGTAATGCCACGCTATGGAAATGCCAACTCAATCAAATGGTTTAAGGTGGAGCCTA ATTGCACATTCCACATAATCAATTCTTTTGAGGATGGTCATGAGGTTGTAGTGAGGGGATGCAGAGCTCTTGATTCAATT ATTCCTGAACGTGACCCAAATTTGAAGGAATTTGAGTGGTTATCTCGTTGTTATGAATGGAGATTGAATATGCAAACTGG GGAGGTTAAGGAGAAAGATCTTTGTGGAACAACAAAAGTTTATATGGATTTTCCTATGATCAATGAAAACTTCATAGGTA TTAAGAATAGATATGCATACACACAAGTAGTTGATCCCTCATCAAGTACTACTCGAGATGCACCAAAATATGGAGGTTTA GCAAAGCTCTACTTTGGAGAATCATGTGCAAAGTTCTCAACGAGGGACACAAAGCAACCTGAAGAACCAATAAAAGTTGA ATACCACATGTTTGAGAAGAATGTATTTTGTAGTGGGGCAGCATTTGTGCCTAAAGATGGGGGTGTTGAAGAAGATGATG GTTGGGTCATCACTTTTGTTCACAATGAAGATACCAACACATCTGAAGTTCGTGTAATTGACACGAAGAAGTTTTCTAGT GAGCCAGTCGCCAAAATCACATTGCCTTGTAGAGTTCCATATGGGTTTCATGGAGCTTTCATGTCAATCTCATTCAAGGC TCAATAG
Protein sequence (LotjaGi1g1v0404600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAISYNNAFLVNCSIHKRPLYVSNNNFGDYIIPLFSAFKPMIMKAMPEVFLQIDVPKTMKNSAAKLVDAFVDSFFEFIDK PLLPSQSNYAPVEELEEAIVMSSIQGHIPDGFPEGVYIRNGPNPLFGGLKSTNSVFGRSSHIWVEGEGMLHALYFKKSSH GNWTVLYNNKHVETETYKLEKQRNKPSFLPAIEGDSPAILFAYLLNWLRFGKANKYISNTNIIEHSGKFYSVAESHIPQE IDIFTLKASNNWDVNGAWNRPFTSHPKKVPGTGELVTFGVAPTKPFAVVGIISADGKNLIHKVDLKLNRCSLCHDIGVTE RYIVIMDFPLTIDLNRLLRGGSLIKYTKEDIARIGVMPRYGNANSIKWFKVEPNCTFHIINSFEDGHEVVVRGCRALDSI IPERDPNLKEFEWLSRCYEWRLNMQTGEVKEKDLCGTTKVYMDFPMINENFIGIKNRYAYTQVVDPSSSTTRDAPKYGGL AKLYFGESCAKFSTRDTKQPEEPIKVEYHMFEKNVFCSGAAFVPKDGGVEEDDGWVITFVHNEDTNTSEVRVIDTKKFSS EPVAKITLPCRVPYGFHGAFMSISFKAQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 57 | 583 | 527 | 5.2E-269 | – | |
| PANTHER | 57 | 583 | 527 | 5.2E-269 | ||
| Pfam | 91 | 581 | 491 | 4.7E-101 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi1g1v0404600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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