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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0405200 |
| Transcript ID | LotjaGi1g1v0405200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ethylene-responsive transcription factor; TAIR: AT5G11590.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9LYD3|DREB3_ARATH Dehydration-responsive element-binding protein 3; TrEMBL-Plants: tr|B7FI90|B7FI90_MEDTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0405200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:89415039..89417175) extracted from Lotus japonicus Gifu genome v1.2.
GCAAAATCTTTCCATATACAAAATCCAAACAAGTAACCATACTTATAATGTGAAATCAGGCAAAAGAATTTAACATTTGC AGCTTAAAACAACCGTGCCTTAATATGAATTAGTACATTATCCAGCAAACTTAGGTTATATTTAGATATCAGATGCTGAT GCAATCTTTACACCAATCCAAATTAAGGTGAAAGTTTGTTCATGTTACTCTGAAATGATATTAGAGAAACCGAGACACAA ACTGAGAGATGAGTGTGCGTGGCAGAACAAGGGTGTATCAGTAGTCAATGGTCACTGGAGCTTGCTGGGTAACTCATTTT CTCTAGTGGGTCCTCTTCTGCCCCCTTATGAACCTTTATAAAGTGACATAAGAGTCACTGGGAAGTGACAGAAAAAAAAG TTCACAGCTGATTTAATTTCACTTCCTTTTCCCTTTCCAAGCCAAGCCAAAGAACTCATACTCAAACCTCTTCCTTCATT CCACTCCCAAAATAAACTTAGTTTCTGCCACATAAACCTTCATACTCAAACTTCAAATATCCAATTCTATTCATAACAAT GAGTGTTGAACCTCACAACTCAGAAACAGAGTCAAATTCAAACTCAAATTCATATACATCATTATCATCATCATCGCCAC CGCAGTCCAACAACAACAACACAAAGCGCAATCGAGAATCGAACACACACGCTGTGTACAGGGGAGTTCGAATGAGGACT TGGGGGAAATGGGTGTCCGAAATTCGGGAGCCAAGGAAGAAATCACGCATATGGCTAGGCACGTTCTGCACGCCAGAAAT GGCCGCCAGAGCGCACGACGTGGCGGCTCTCAGCATCAAGGGAAGCGCCGCCATTCTCAACTTCCCTGAGCTCGCAAACT TGCTGCCGCGGCCGGCGTCGCTTGCTCCTCGTGACGTTCAGGCTGCAGCAGCAAAAGCGGCGCACATGGACTTCCCCTCT CCAACCTCCTCGTTGATGTCTTCTGCAATGGACATTTCCTCTGCTTCTGATGAGCTCAGTGAGATAACAGAGCTTCCCCG TTTGGAAAACAGTGATGAGTGTGGCGAGCTGGAGAATGAGTTCGTGTTGGTGGATTCCATCGATGAGTGGATGTTTCAGC CGCCATGGTTGCAGACCATGGAAGATTTCGTCTGGAGTGGCAGAGATTGGGGTTGTGTGTAATTTGATGTTGTGTGCTTG ATTTGCTCTGTTTCTGGGAATGTCTCTGTTTTTCTACTCTGTTCTTGTTTGGTATAAAAATATCTCCTTTTGGCGTGTAT CGGTATCAGCAGCCACTATAGGTTGTTGCTCACTTCATCACTTAACCATCATAAGATTGGGGGTTTGATTATCACCCCTG GGAGTGAAGCATATTTCGTGGCCAGTCGCTTACATTACTGCGATCATTTGCGACGAAGAAATTAGTTATTACCGTCAGCA GAGGTGGATATTTGTGTCAACAAAAGAAAAAGGTAAAAATGCACCAGCAGCCACTTGTGGTTCTTTCTTTTAGGGGCTAT AATAACTCACTCTTGTGGATTTTTATCCTTTTGTCTTTGTCTTTGTCTTGCCCCCTCATTATGTGTGCCTTTCTTTCTCC TTATTAGAATTGTAAATGCTTATAAATGAATAAAGTAAGATGAGAAAGTGTTTGTGTTCCTTGTTTGGGATGTTTAATGA CTTGCAGTTTGCTTTGGGGAGAAAGCTAAAACCGGAAACTCTAATCCAAGTAAAAAATAGTCCTTTACTTGAAAGGGGAA TGGTGATGATGATGATGATGATGATGACCATAAATCATAAATGATATCTTAATTTCAAGTTGTAGTGGTGGCTTAATCTC GTTGGCATGGAGATTATTTATTTATGCCAATAAAACAAGGCTTTGTGTCTCATGTCTCAATTCTTTGGATATTCAAGGTT TTGTGTCTCATGTCTCAATTCTGTGGATTAATGGGACATAAAGTTTTCTGGTTTTCCTTTGGCAAACGGCAGATGCTTAT TGGTGTGCTCTTTGTGGTGATGAGCATGTGATAGTGACAAAATAATTGTCATCAAACACCACAGACACGCTTATAGAAAC TGGCAATTTCCCATTCTCCTTACAATTAAGATCTGCTCAATGCAAAATGGTTTGAAG
CDS sequence (LotjaGi1g1v0405200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGTTGAACCTCACAACTCAGAAACAGAGTCAAATTCAAACTCAAATTCATATACATCATTATCATCATCATCGCC ACCGCAGTCCAACAACAACAACACAAAGCGCAATCGAGAATCGAACACACACGCTGTGTACAGGGGAGTTCGAATGAGGA CTTGGGGGAAATGGGTGTCCGAAATTCGGGAGCCAAGGAAGAAATCACGCATATGGCTAGGCACGTTCTGCACGCCAGAA ATGGCCGCCAGAGCGCACGACGTGGCGGCTCTCAGCATCAAGGGAAGCGCCGCCATTCTCAACTTCCCTGAGCTCGCAAA CTTGCTGCCGCGGCCGGCGTCGCTTGCTCCTCGTGACGTTCAGGCTGCAGCAGCAAAAGCGGCGCACATGGACTTCCCCT CTCCAACCTCCTCGTTGATGTCTTCTGCAATGGACATTTCCTCTGCTTCTGATGAGCTCAGTGAGATAACAGAGCTTCCC CGTTTGGAAAACAGTGATGAGTGTGGCGAGCTGGAGAATGAGTTCGTGTTGGTGGATTCCATCGATGAGTGGATGTTTCA GCCGCCATGGTTGCAGACCATGGAAGATTTCGTCTGGAGTGGCAGAGATTGGGGTTGTGTGTAA
Protein sequence (LotjaGi1g1v0405200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVEPHNSETESNSNSNSYTSLSSSSPPQSNNNNTKRNRESNTHAVYRGVRMRTWGKWVSEIREPRKKSRIWLGTFCTPE MAARAHDVAALSIKGSAAILNFPELANLLPRPASLAPRDVQAAAAKAAHMDFPSPTSSLMSSAMDISSASDELSEITELP RLENSDECGELENEFVLVDSIDEWMFQPPWLQTMEDFVWSGRDWGCV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 40 | 40 | - | – | |
| MobiDBLite | 1 | 46 | 46 | - | – | |
| PANTHER | 12 | 194 | 183 | 2.1E-85 | – | |
| PANTHER | 12 | 194 | 183 | 2.1E-85 | – | |
| SUPERFAMILY | 46 | 104 | 59 | 9.81E-21 | ||
| Pfam | 46 | 95 | 50 | 5.2E-11 | ||
| ProSiteProfiles | 46 | 103 | 58 | 22.669 | ||
| Gene3D | 46 | 105 | 60 | 5.0E-29 | ||
| SMART | 46 | 109 | 64 | 1.1E-34 | ||
| CDD | 47 | 105 | 59 | 2.58835E-31 | ||
| PRINTS | 47 | 58 | 12 | 6.1E-10 | ||
| PRINTS | 69 | 85 | 17 | 6.1E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0405200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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