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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0411100 |
| Transcript ID | LotjaGi1g1v0411100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Poly [ADP]-ribose] polymerase; TAIR: AT1G32230.1 WWE protein-protein interaction domain protein family; Swiss-Prot: sp|Q8RY59|RCD1_ARATH Inactive poly [ADP]-ribose] polymerase RCD1; TrEMBL-Plants: tr|W9RNQ8|W9RNQ8_9ROSA Putative inactive poly [ADP]-ribose] polymerase SRO1; Found in the gene: LotjaGi1g1v0411100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:90178362..90180916) extracted from Lotus japonicus Gifu genome v1.2.
GTCTTGTGCAAAAACAAGGAACTCAAACTAAAATCACTCCTTGAGTTTACGATCCTGTTCCATTAGCAATGGCTCAAGCT ACTGAAGCTTGTTCACCACCTAGAGCAAATTCACTTGATCTTACACCTCCACCACCACCATCACCACCACTCTCACCACC AGCTTCTCCACTGTCTAATCCACTTGTGAACTCATCCTCTGACCACAAAGACGCATGTTCCCGTGACCCATTCATAGTCC ACAACGGACATAAATTCAACCTCAGCGCCGTGCCTTCGAGAGTCATGTTCTATCGGAACATGTATTGGGAGGATTTCCAG GGCGAAACCCTGGAATCCCTCCGCTCCGGATTCTTAAAGCGCACCCCAACGCTCCTCCTTGAAGTCGAAGATGACAAATA CATCTTCGACTTCACGCGCATGTTGCAGGTTCACGTTGCGTCCAAGTCCTTCAGATCCATTGCCTGGATCGATGAAAGAG GTAAACCTTTCTTCCCCGTAAAGTTTTTCGACCATGATTTCTCTCAAGAAAAAATGGAAGAGGATCATGGTAGGGCTGCT GAGAAGGAAAATAAAAAGATGGAAGAGGATGATGATGATAAAAGTGATAAGAGAAATGAAAAAATGGAAGTGTGTGACGT TTCAGGTTCCAAAACGCAAAGTTTAGGACCGAAGCCGAAATTTCCGAGTACTAAGTTATTGGCGAGTGATGATAAGATGT ACAAGTTTGCGAGCAATTTGTTTCTGAAGCACATGACTAAGGTTGATCCTCAAGCTGTTGTGACGAACGTTCATGAATTT AAAGTGATGGGGGAATTTGGAAGAGTTCGTAAGGATGTTCTTGAGAGGCAAATTGAGATCACAGAAGCCAAACGAGGCAA AGCCAATGTCGTTTATGCTTGGTATGCAGCGCCAACATTCCATGTGGCTGGAATTTTGGCTCTTGGGTTTGACCTGCCTG ATCACAAAAATTCTGGGATTCAATTACCATCACTTGGAGCTGGAATCTTTTTGGCTGATGTGGAGTCACCCCAATACAGG TGGGTACTACTTGTATGATTCACTTGTTTTGTGTGTTTTAAAATTAGTTTGGAAAACTGTGACAATTTCTTTTACTAAAT GACTTTTCAGTTGTATAACCCTTAAACGTTACAAGATCTAGCTTATTGTTAGTACTTGTTTTGTGTTTGGTTAATTCACA TTGGAGGCCGGTCACATAGACATTCTTTATAGGAAAAAATTCACTTTTAAATGGTTATGTAGATATTTCAAGATAGTCTT GTAGAATTGATTTGAATTCTAAAATCAATTTTACTAGAAGTTCTTAGAGAAAATAGCTTCTGCATAATCAATTCGAGAGC TGCTATATATGTTTCGAATGTTGTATATTAACTATTAAGTGAGTTGATTAGTCTGTTGTGTGTTTTGCAGTGCCTTGCAA TACCCGGTGCACCAAGATCCTGAGAAGCATGTTGTGCTCTGTCGGGTTGTGCTAGGAAACGTGGAAAAAGTGCATATTGA ATCTAATCAAACTAGTCCTTCCCGTGAGGAATTTGATACTGGCTCTGATGATCCTAAGAATCCTAACTGGTATGTGGTAT GGGGCCATGACATGAACAGACGCATAACCCCTATTTGTGTTGTCAGCTGCAAAACCACAGGCATAGTTCCTGGTAAATAA TCAATGTCACCCCTTTTTAATTCATTCTTAATTTCCACCTTAATTTGTATGTTTTGTATTTTCTGTATTGTACTATTAAC TAAACTAATCTTTGTGTTTTGTTTTGCAGTGGAATGGAAAATATTCTTCTGTGAAATTGCTATACTTCCAAAGCTGATCT CAGAGATAAAGAAGCGGATCCCTATTTTCAATGTCCCTGCACTTAATTACATATATGAAATGTTCAAAGTAAGTACTACT TGCTCGATCGCTGAATTTATAGACTAGCTAGTTGTTTCTTTAATTTCTTTTTCGTATTGATCATGTAATGTTACAATGCT TAAGCTACTACTTGCAAGAAATAATTAATTAACTTTTTTTTTTTTTTGCAATGCTATGTGGCGTGTTTTAGTGTAAAATG GTGAGCGGAGATGTTTTCATAAGGCAGTTCCGATCAATCGTCGGTGATCGAGTAATCTGGGAGACAGCAAAGGCGATTAT GCGTTCATGACGAGGATCGCTGCACACCTGAAGTAATTCTATTGCGGCGGTTAATTTGTGATGTTAAAAAATGCCCGCAA AGTGTTTTTTCTTACAAATTTTTCATTTGAATGGGTGTCGATGGGTATCCGTTCTTCATGTTGTTCGCATATTGTTACTC AAAGAATAATGTGTAATGTTTTATATCTAGAATTGGAAAGTGATCTATAAACATCATAACAGTGCGAGACACCCAATACC TGAAATGATTTGCACTAATTTTTATACATACTTTAGTGACTAACCAGTTTATCCACATAAAAATTGGATGAATTTGAGTG TAGCCACTGTTTAGTTTAGTTGTATAAGAATCAGAACTCTTTAGAAACTATGGGCCGGGCAAGTAGCAATGACAG
CDS sequence (LotjaGi1g1v0411100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCAAGCTACTGAAGCTTGTTCACCACCTAGAGCAAATTCACTTGATCTTACACCTCCACCACCACCATCACCACC ACTCTCACCACCAGCTTCTCCACTGTCTAATCCACTTGTGAACTCATCCTCTGACCACAAAGACGCATGTTCCCGTGACC CATTCATAGTCCACAACGGACATAAATTCAACCTCAGCGCCGTGCCTTCGAGAGTCATGTTCTATCGGAACATGTATTGG GAGGATTTCCAGGGCGAAACCCTGGAATCCCTCCGCTCCGGATTCTTAAAGCGCACCCCAACGCTCCTCCTTGAAGTCGA AGATGACAAATACATCTTCGACTTCACGCGCATGTTGCAGGTTCACGTTGCGTCCAAGTCCTTCAGATCCATTGCCTGGA TCGATGAAAGAGGTAAACCTTTCTTCCCCGTAAAGTTTTTCGACCATGATTTCTCTCAAGAAAAAATGGAAGAGGATCAT GGTAGGGCTGCTGAGAAGGAAAATAAAAAGATGGAAGAGGATGATGATGATAAAAGTGATAAGAGAAATGAAAAAATGGA AGTGTGTGACGTTTCAGGTTCCAAAACGCAAAGTTTAGGACCGAAGCCGAAATTTCCGAGTACTAAGTTATTGGCGAGTG ATGATAAGATGTACAAGTTTGCGAGCAATTTGTTTCTGAAGCACATGACTAAGGTTGATCCTCAAGCTGTTGTGACGAAC GTTCATGAATTTAAAGTGATGGGGGAATTTGGAAGAGTTCGTAAGGATGTTCTTGAGAGGCAAATTGAGATCACAGAAGC CAAACGAGGCAAAGCCAATGTCGTTTATGCTTGGTATGCAGCGCCAACATTCCATGTGGCTGGAATTTTGGCTCTTGGGT TTGACCTGCCTGATCACAAAAATTCTGGGATTCAATTACCATCACTTGGAGCTGGAATCTTTTTGGCTGATGTGGAGTCA CCCCAATACAGTGCCTTGCAATACCCGGTGCACCAAGATCCTGAGAAGCATGTTGTGCTCTGTCGGGTTGTGCTAGGAAA CGTGGAAAAAGTGCATATTGAATCTAATCAAACTAGTCCTTCCCGTGAGGAATTTGATACTGGCTCTGATGATCCTAAGA ATCCTAACTGGTATGTGGTATGGGGCCATGACATGAACAGACGCATAACCCCTATTTGTGTTGTCAGCTGCAAAACCACA GGCATAGTTCCTGTGGAATGGAAAATATTCTTCTGTGAAATTGCTATACTTCCAAAGCTGATCTCAGAGATAAAGAAGCG GATCCCTATTTTCAATGTCCCTGCACTTAATTACATATATGAAATGTTCAAATGTAAAATGGTGAGCGGAGATGTTTTCA TAAGGCAGTTCCGATCAATCGTCGGTGATCGAGTAATCTGGGAGACAGCAAAGGCGATTATGCGTTCATGA
Protein sequence (LotjaGi1g1v0411100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQATEACSPPRANSLDLTPPPPPSPPLSPPASPLSNPLVNSSSDHKDACSRDPFIVHNGHKFNLSAVPSRVMFYRNMYW EDFQGETLESLRSGFLKRTPTLLLEVEDDKYIFDFTRMLQVHVASKSFRSIAWIDERGKPFFPVKFFDHDFSQEKMEEDH GRAAEKENKKMEEDDDDKSDKRNEKMEVCDVSGSKTQSLGPKPKFPSTKLLASDDKMYKFASNLFLKHMTKVDPQAVVTN VHEFKVMGEFGRVRKDVLERQIEITEAKRGKANVVYAWYAAPTFHVAGILALGFDLPDHKNSGIQLPSLGAGIFLADVES PQYSALQYPVHQDPEKHVVLCRVVLGNVEKVHIESNQTSPSREEFDTGSDDPKNPNWYVVWGHDMNRRITPICVVSCKTT GIVPVEWKIFFCEIAILPKLISEIKKRIPIFNVPALNYIYEMFKCKMVSGDVFIRQFRSIVGDRVIWETAKAIMRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 46 | 46 | - | – | |
| MobiDBLite | 15 | 34 | 20 | - | – | |
| PANTHER | 54 | 474 | 421 | 3.6E-98 | – | |
| PANTHER | 54 | 474 | 421 | 3.6E-98 | – | |
| MobiDBLite | 157 | 189 | 33 | - | – | |
| MobiDBLite | 157 | 206 | 50 | - | – | |
| Coils | 164 | 184 | 21 | - | – | |
| ProSiteProfiles | 194 | 418 | 225 | 14.305 | ||
| Gene3D | 205 | 401 | 197 | 9.7E-21 | – | |
| SUPERFAMILY | 211 | 398 | 188 | 3.45E-16 | – | |
| Pfam | 418 | 472 | 55 | 6.0E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | NAD+ ADP-ribosyltransferase activity | Catalysis of the reaction: NAD+ + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor. |
Expression pattern of LotjaGi1g1v0411100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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