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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0414500 |
| Transcript ID | LotjaGi1g1v0414500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT5G65640.1 beta HLH protein 93; Swiss-Prot: sp|Q9LSL1|BH093_ARATH Transcription factor bHLH93; TrEMBL-Plants: tr|I1K9L1|I1K9L1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0414500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:90709400..90711810) extracted from Lotus japonicus Gifu genome v1.2.
AATTCCTCAGATCAGAACTACACATTCTCAAAGAGTGTTTTTCTTAAAAAATTAGCACTTACAACACATAGAGAGAAAGA GAGAGATGGAGCTCTATGACCAGGATTTCTTGGACGAATTAATGGCCCTGAGAAGAGAAACATGGGAAACCAATCCAAAC ACAGAAGAAAACCAGTTCTTCTCCAATGGCTTCAGTTTTGACAGTTTTGATCAAAACTCTCTTGGCTATCTCCCAAACTC TTCTCAAGTTCCCCAAAGTTACAACAATGACTACACCTTCAATGAAATTTATGGCTCCTTACTTGAAGAATCCTCATCCT CAGCACCACCACAGGTTATGGATTCATACTATAATTATTCCCTTGATACTCCCTTTAATATCCCTCCATGTCCTTTACCA AAAGACTTTCCATTGTCCATGATGGAAGAAGAGGATCCAGGTTTGCTTGGGGAAGAGCTTCAGAACATGGAGCTGCAAAC CACTTGCAAAATGGAGCCAGCAACACAGTCCCCTGAACCTGAAATGCCAGTTTTCAACATGGGTGGTGTCGGTCTGGAAA GAAAGAATAGAGCAAAGAAGGTGCAGGGACAACCCTCAAAGAATCTAATGGCAGAGAGGAGAAGAAGAAAGAGGCTAAAC GATCGCCTATCGATGCTAAGAGCAATTGTCCCCAAGATAAGTAAGGTACGCAGTGAGGATCATTCACTATTGAGTGCTAT AAGTACAATAATATAATGGGTGTTTTATGCAGATCTAATTTGTGTTGCTGAATGTTGAATACTCATCACAGATGGACAGA ACATCTATACTTGGAGACACTATTGATTACATGAAAGAGCTTTTGGATAAGATCAACAATCTGCAACAAGAAGTAGAAGT AGATTCAAATATGGCAGGCATTTTCAAAGATGTAAAGCCAAATGAAATCCTAGTGAGAAATTCACCTAAGGTATGAAACT TCCGTGCTATAACTAGTATCAGTTCATCAATTGAGAGTGTTTGGATACAACTTAACTACACTATGATATATGACTTTCAT CTTAATCTATAATAAGCTATCTATAATAAGCGTCTCATTCATTTTTTGTCTGAAGTGCGTGCTAATTCTGTCTTCATTTG TGATGATTGATATCCAAATATAGTCTTGACCCTTTGAACTAACTCTGCTTTGGAGGATTCCTAATTGTGATTTGTGAAGT TCTCACTGCTTTTTCATTTTTCTTTTCTTGTCTTTGCAGTTTGAGGTGGAGAGGAATGTTGACACCCGGGTCGAAATTTG TTGTGCAGGCAAGCCAGGCTTGTTGCTATCAACAGTAAACACCCTGGAAGCATTAGGCCTTGAGATTCAACAATGTGTCA TTAGTTGTTTCAATGATTTCACAATGCAGGCTTCTTGCTCGGAGGTATATTAGTATGATAGTTTTGTGACACCAAGGTTT TAAATTGCGGTCGTAGTTGCAGTTGTGGAACAACAAACAAATGCGGGTAGACGCGGCCACAATTGCAGTCACGATGCCAT AATAGAGACTTCAAAACTCTTTATGTTGTGGCTGTGATTGCAGTTTCAAACCCATTTTAAAACCCTGGAGAACACAGCAT AACAAAAATTGGTTGGAGAAATTCCATTCTTCCATATATGGTCTTTTTTTCCATGGAGTGATCTATCATGTTTTGTTGTT TGTTATGTAACAGGAATTGGAGAGAAGGACAACACTTAGTTCAGAAGATATTAAGCAAGCACTATTTAGAAGTGCTGGTT ATGGAGGAAGATGTTTGTGAGAGTAGAATACTTTGTCATGAGAAGATTTCCATTGGTGTTGACTGGTTTTGTTTTCTCAC ATATGCCAAATACAAAGGCAAATAAATTGAAATGTCAGGGTGTGATGGAATAATCTTTATGATTCTTAGGCTCACTTACC AATGATAAATGTTCATGTGAATGTGATCATGAATACAATTAGGGGAAGAGAGGGCCTAGTTAATAGTTAATTGCCCCCTG AGGATTAAGAAGATGCATGTGCAGAGGTTCATGCAATATTGTTAACATAATAAGAGAGTAAAGTTTGAGTTTTTGTTTCT ATTCTTTTCAGATATGACTTCTCAATTTCTTTGTATAACTTCTAATTATGAAATAGTTTTCTATGGAATATGAGAAATAA GAATGTGATCCGTATTTCTTTATTCAATTTTCATTCTTGGGAAGAAAGCAGCAGAAAAAAAGAAAAGAAAAGAAAAAGAG CATAGGGAATATTCCTAACTACAATATAAAATTGACCAATTCTTTGGTTCAAGTGGTAATGTTTGATTTCTTTTAAGTAG GGTCTCAAGTTTTTCTTGTGAACAAAACAAAAAAAAAACTCTTGTTGTGAGAGCTAACCCCACCAAGATGTATGGATGTT CTCGACTCAAA
CDS sequence (LotjaGi1g1v0414500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCTCTATGACCAGGATTTCTTGGACGAATTAATGGCCCTGAGAAGAGAAACATGGGAAACCAATCCAAACACAGA AGAAAACCAGTTCTTCTCCAATGGCTTCAGTTTTGACAGTTTTGATCAAAACTCTCTTGGCTATCTCCCAAACTCTTCTC AAGTTCCCCAAAGTTACAACAATGACTACACCTTCAATGAAATTTATGGCTCCTTACTTGAAGAATCCTCATCCTCAGCA CCACCACAGGTTATGGATTCATACTATAATTATTCCCTTGATACTCCCTTTAATATCCCTCCATGTCCTTTACCAAAAGA CTTTCCATTGTCCATGATGGAAGAAGAGGATCCAGGTTTGCTTGGGGAAGAGCTTCAGAACATGGAGCTGCAAACCACTT GCAAAATGGAGCCAGCAACACAGTCCCCTGAACCTGAAATGCCAGTTTTCAACATGGGTGGTGTCGGTCTGGAAAGAAAG AATAGAGCAAAGAAGGTGCAGGGACAACCCTCAAAGAATCTAATGGCAGAGAGGAGAAGAAGAAAGAGGCTAAACGATCG CCTATCGATGCTAAGAGCAATTGTCCCCAAGATAAGTAAGATGGACAGAACATCTATACTTGGAGACACTATTGATTACA TGAAAGAGCTTTTGGATAAGATCAACAATCTGCAACAAGAAGTAGAAGTAGATTCAAATATGGCAGGCATTTTCAAAGAT GTAAAGCCAAATGAAATCCTAGTGAGAAATTCACCTAAGTTTGAGGTGGAGAGGAATGTTGACACCCGGGTCGAAATTTG TTGTGCAGGCAAGCCAGGCTTGTTGCTATCAACAGTAAACACCCTGGAAGCATTAGGCCTTGAGATTCAACAATGTGTCA TTAGTTGTTTCAATGATTTCACAATGCAGGCTTCTTGCTCGGAGGAATTGGAGAGAAGGACAACACTTAGTTCAGAAGAT ATTAAGCAAGCACTATTTAGAAGTGCTGGTTATGGAGGAAGATGTTTGTGA
Protein sequence (LotjaGi1g1v0414500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELYDQDFLDELMALRRETWETNPNTEENQFFSNGFSFDSFDQNSLGYLPNSSQVPQSYNNDYTFNEIYGSLLEESSSSA PPQVMDSYYNYSLDTPFNIPPCPLPKDFPLSMMEEEDPGLLGEELQNMELQTTCKMEPATQSPEPEMPVFNMGGVGLERK NRAKKVQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYMKELLDKINNLQQEVEVDSNMAGIFKD VKPNEILVRNSPKFEVERNVDTRVEICCAGKPGLLLSTVNTLEALGLEIQQCVISCFNDFTMQASCSEELERRTTLSSED IKQALFRSAGYGGRCL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 26 | 336 | 311 | 1.8E-159 | – | |
| PANTHER | 26 | 336 | 311 | 1.8E-159 | – | |
| Gene3D | 159 | 232 | 74 | 2.4E-13 | ||
| MobiDBLite | 161 | 181 | 21 | - | – | |
| ProSiteProfiles | 168 | 217 | 50 | 15.237 | ||
| SUPERFAMILY | 172 | 230 | 59 | 4.45E-15 | ||
| Pfam | 174 | 217 | 44 | 1.2E-9 | ||
| SMART | 174 | 223 | 50 | 2.1E-11 | ||
| CDD | 175 | 217 | 43 | 6.49428E-5 | ||
| Coils | 207 | 234 | 28 | - | – | |
| CDD | 262 | 303 | 42 | 3.95177E-4 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0414500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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