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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0416100 |
| Transcript ID | LotjaGi1g1v0416100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tRNA-processing ribonuclease BN; TAIR: AT1G48460.1 tRNA-processing ribonuclease BN; Swiss-Prot: sp|Q08DF4|DYN1_BOVIN Dynamin-1; TrEMBL-Plants: tr|A0A072V374|A0A072V374_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi1g1v0416100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:90893299..90901963) extracted from Lotus japonicus Gifu genome v1.2.
TAATATATGATTGAAAAATGTAAAAAAACTCTATCTTTTATGAAATGCTCTATTTTTCTATTTTCTCATTCCAAGCAAAA CCCAATTGTGTTGTCTGAAGCCAGTGCAAACAGTAAAATACCAAGATACCCCTACTGTGTAATAAGTTATCCACTTGTGC AGTGTAAGGGTTTTAGGAGGAAGAAGAAGCAAATCGCAAGCTCTAAAACCCTAAATTCAGGTGATTCATGGAACTTAAAA CCCTATGTTGCGCTCTTCCCTCTCAACCCCTTCGTGTGAGTGTTCAACCTGCAATGCCATTCAATTTCCATTCTAACTCT TCTTCTCTGCTATCTTCCATTTTCAAACACCATTTACTTAACGTTCTTAACATTTTTTCGCAGTCTCAAACAATTGGAAT CCATAGCCCCTTCAAGTATCAGAGACAGAGATTTGGGTTTGGAAACTCCTCTAAATGTACGAACTTCCCCCCTTATTGCA TGGATACTGTGTTGGGTTTTTCAAATTTAACACCAGAACCTAATAAAAAATTGATTTTTTTAGTTTGTAGCATTTTGGGC CTCTGTTTACATTATAAGTAACCCTTTAAGAAGTTAAGCTTTTTTTGATTTCAGGTTTGAAATGGGTGATTAAAGAGCCT TCTTTGTTTGGATTGAGCAAATTTCAAAGGCCTATAGTTCATGCTTCTGAGTCTAGTGTAAATGGTAGCTTGGAAGTTCA TCCGGGCGAAAGTTCGAGTGTGCCTGTTGTTGATGTAAATGGTGGCTTGGAAGTTCTTCCAAGCCGAAGTTCTGGTGTGC CGGTTGATGCGTATAATGGGGTGGAGCCGTTTCGTGGTAAATCGGGTTCGGTTTCATTCTGTGGGTTGACACACCAGCTG GTTGAAGAAGGGAAATTGGAATCTGCTCCTTTTAATGAAGAGGAGAGCTCTTACTTCTGGCTCTTAGGTCCTGCTGCATT CCTGTCATGTTTGATTCTGCCGCAGTTCTTTGTTGGCAATGTGGTTGAGGCTTTCTTTAATGATATGATTTTAGTAGGTA TTTATACAACTTTATACTTTGTTTTACCGTCTCTTGTGATTTAAATCAGTTCATAGTCGTTTCTGTTTTAAATCAGTTCA TAGTCGTTTCTGTTGTGGAAAGTAAAAACTGCCAAGAGGCACCCGGAGAATATATGATGGTCGCAACTGTCAAGGCTTTT TGCTGCTGTTAACACCAAATGAATAATTTTCTTGACGTAGTGCCAAAGTGTTATCCAATGTCCAAACTTCAAAGACTATT AATGATAATCTTATTAATATTTATTGAAGCCCTAATCAAATAGTAAAATGATTTCTTTCAAGTGATCTTCAATCTCATCT CAATGCAAACCTGTTTTTCTGTAGTGACACTATTTTTGCGAATATCTATCCATGTATCTATCTATATCCCAATAAGATGA GTTGTATTGGCATATATTCGAGAACCTAACCTTAACTGACTATAGTATCGTATCAATGTTAAACCAGTCATTGCGGGGAA GAAAAAGTTAAAAAGCTTTGACATTTATTTGAGAAGCATATCTTTTAGAAAAACACAAGACATGTAAGTATTGACATTGT TAGCTCTGTGGAATAATAGCCCTGTTGTAGAATTTTGAATGCCTAATCTATTGCTTCCCATTGGATTTTGCTATATTTCT GGTTCTTGGTGGTGTGGATGTAGACTTCAGTAAAGGTAACTAGTTCATAACTAGTTCTTGGAAGATTGAAGCCTTTGTTT CTTGTTTAACTTTTAGCTATTTGGAAAAATTGTGTGTTTCCATGGTGTTCTTTTGGACAAGTTTGGTCTACTTCTGAATT TGGACAAATAAACTGAATTTGCTATCAGAAAAGATCTAGATGGAATCCTGTGAATTACATAGTTTTATTTGTAGGATGTT GTAAAATGTGGGGAAGAAGTAACTCTTATGCACACTTCTATTACCAATAAAATGCAGATATTGTGAGTTCATTTACTTTT GAGGCACTGTTCTACATTGGACTTGCAACATTTTTGCATGTGGTTGATCGTGTCCAGAAGCCGTATTTGCAGTTTAGCTC AAAAAGATGGGGTCTCATCACTGGCCTCAGAGGATACCTATCCTCTGCATTCCTCACAATGGGTTTGAAGGTCGTTGTTC CTCTCCTTCTTTTGTACGCAGCCTGGTCCGTTGCTCGCCTGGCCGTAATTGTTGCTGTAGCTCCTTTTTTAGCTGGTTGT GTTATTCAATTTGCATTCGAGAAATATTTGGACAAGCGTGGTTCAGCTTGTTGGCCTCTAGTCCCGATAATATTTGAGGT TTGTCTATCTGCTATTCTGCTTGTTTTCGGATTTGACTCCTCTAAAGCGAGTGGACTCACTTTAGAGAGTAAAGTAAGTC ATCATACCATTAATAGTGATTAACTAATTTGAAAAGTCAATAAAATCAAACTTAATCAATGGTGTGATGACTTACTTTAC CCCATAAAGTGAGTAGTGGACTCACTTTAGAGGAGCTGGACCCATTGTTTTCATATTGATTCAAGAACTTTATGCAGCTT GACTCTTCTGCCCACTGCTGGGAGAAGAGTAGCAGAAACTTGACTTTTTTACGAGTGGTAATAGCGTGTTTGAATCAGTT TCTCTTTCCTCAGGATCAGTTTTAAATTCTAATACTCAGAAGCTAATCACACAAGCTTCTCCATGGAATTGATTTTGACT TTAGAATCAATTGTAGAAGGAATTTCAAACATGCACGTAGTCTTATAACATTTTGAATTGACTTGCCAGGTATACAGACT ATATCAACTTACAAAAGCTGCTCATTTTGTTGAGAGGTTGATGTTCTCTTTGAAAGGGCTTCCTGCCACCCCTGAAATAC TAGAACGAAGTGGAGCTTTGTTTGCAATGATAGTGAGCTTCCAAGTACTGGGAATTGTGTGCCTTTGGTCATTGATGACA TTTCTCGTGAGGCTGTTCCCTTCTAGGCCAGTAGCAGATCATTACTGAGTTTAACAGGGATCGGGGAAGGGTGTTGTATA TAGTTGAATGGAATCTGTAAGAGTTGAGCATTATTATTTGATTATTTTCGATGTAGGTTTTTCATAAAAAAAAAAATTTC GCTGTAATATTTGTTTTAATTTCTTCAGAGTTCAGAGTAATATCATTCATTTACCAAGAAAAAGAAAATTAAGGGTTTAG TCTCTGTAATGGCTTGTTTGGTTTTATAGCCAAATCGTGTTAGGTCAAATTAACTTATTTGCACCCCAGGATAGTAATTT AGATAAAATAGTTGTAATCAAAATGAAAATTTATTGATATGATTACAAGGAGCACTATAACTCAAAGTTTAAACCCTCTT TGTTAGTACTGCAAAAAAGTGATTTTAGCTTGTGCACACCATCACATGAGTGTTAATAAAGGCCAAAGTGAGAATCAAAC GAAGCTAAAGACCACGCATGAGACGCACATGGTTAGCCAGATGCCCAGATGATGTTTTAATCTGCACTTCTCAGAAGAAA AAAAAGTGAAAAATAAACAGACTACTACGTGAATTGAACAAATTCAAGTTTGCTGCGTTTCTTTGGTAAGGAAACTTCCT TTACTTTCACATAACACAGGTACAGAAGCAGTTCTACAATGGTATTCAAGCTGAAACGCTTGTGAGAACTGTTCAATCAA GGACCTATGAGTAATATGAATAAGACTGTCATCATCCAAATGATGCAAATCAGCTGTTCCATTAGCACTACATGACTGTG CTTCTCTCAGTAATCCCTTGATGCTCCCAACTTCACGGTCACGTATTCCGCATGGGACGATCCATTTAAATGGAGTCAAA TCCGTCGTGACATTTAGGGCCAAGCCATGATAGGTTATCCAGTTAGCTGCTCTTATACCTAAGGCTGCCAGTTTCTGGTT TCCTGGAATATGATGAAATGAAAAATAAGGAATGAGATAACAATTTCGGGCTGCTCCGGCTTCAACATTTTGAATCATGA TAAACTCACATGCACAAATTGATTATGCTGTACAATCTTACTGCAGTGCTTCATAGTAGACCAAAGCAAGGTCAAAAAAG GTTAGTAGCAGTCATTGTCTTGATATTTGGAAAATTTTCTAAAGTCACAACCAATGATGCTAAGAAGCTTATGCGAGTAG CTCATGAGTTTCAGAATTGATTCCGAGGAATAGGAATCAGAAGCTGATCCAAACATGCAATTAATTTCATGGGGGAATAG GAAACAAGTAAGCTAACTGACACTACTCATAATCATGAGGCAGGAGTCTCGCAAGTCACAATTTTTGACAACCTGTGTCA ATCTATAGACCAAACATCCAAATTCCTTAATTTTTCAGTCATGAAGGATTAGATTGCACTTGCAGCATCTAAAATCTTAA GCGTGACCAAGGACTCCCAAATCAGGGCTAAATACTTATCCAACCTATTTTGCTCGGATCAGTAATACTAGTAATATCTT GATCAAATTTTCCAATCCTATGATGCATGAAACTAAAATGTGAATGTGTACATACTACATATACATGATCAACCAAATAA ACTCAAATGCTGTAAGCATGAAGGATTATCTTGGATGACATGAGATAACATTTTGATAAATCAATTGACCATATAATCTG AAATTGTTGATGTAGTGGTAATAAAGAGAATTGTGACATACCAACCCAAACACCAGTTAAGCCTTCAACTCGAGAAGCTT GAATCGAAAAGGTTGAAGAAAGGACACGAATGACAACCTCCTCAAGGGTCCTGAGGTACCAATGAAGATCCATCTTGTGC CTTCGGAGGTTGATGATAGGGTACATAACTAACTGCACATCAATGCAAAACACATTCAGAAATTAATACACACATAACAA ACTAAAGAAAAAACAGGAATTTAATCAAGAAACATAATTTAAGAACCTGGCCAGGGCCATGGTATGTCACTTCTCCTCCA CGTTCAGTACGATGAATATGAAAAGGAGGGTTTTCGATGTCAAATTTGAGGTTCTGTTGGGTGGTACTACCTGAACCCAA AGTATAGACAGAAGGGTGTTGCAGAATGATAAGGGTATCAGAGCAATCTCCTTCGTTTTCAATCTGTGCCTTCTTTTCCC TGACTATGTCTTTCTGTAAAGACCATGCCACTTCGTAAGGAATCAGCTCATGATGGAAATCCAAGAGCTCACAGGTTCTG GTTCGTTGGGCATTGATTGTGAGAAAGGATGATTTGATGGAATGCTTGGAGTGAAGAAAGAGAGGTAGACATGGAATTGA GGAGGTGAAATTCAATACTATCATTTCTGATACCCTTTCCTTCAAACAGCGATGTAGAATTGACAGGGAGGGGATCGATT CGATCGAGACCAGAAAACACACATAGAGAGAGGTCAATGTTTTTGTTTTGATTTATTGGATTTAAGAAAGGGCAATGCTG ATGATTACAAGAATATTAAGAAACCCTTTTTATTATTTATTTATTTTTGGAAAACTAATTTCTTTTTTTAATGATAAATT AGTGTAAGACAAGTATATAGATTTTTTTTAAAGAAAATAAATTAATAATAAAATGTGTTAAAAATTGTATTCATAGAATT TCTCTTTTGAATAAGAAAAAAGTTTATTATTAATTTAAGAATGTTATACCAAACAAGCAAGCTAGACACGGTAAGGACGA GAATACTAATTCAAATCTTGGAAAAAATATTTATTAAAAGTGACTTGTAACTGTTTTCCGAACGGGTGACGACATCCGTA AAAAATAATGACGTGTCTTTAATATTTTGTTTTTCTTGACTACTACGAGTCTGAAGGACAGAAATGGAAGAAAATATATG TATATATGTCATTGAATTGTTTTGCTTTTTCTTCTTTTCTAGAGGTGTTTTTCTGTTGTGTTGAGTGTTTGTTTTTAGAG GGAGGGATTCATGCCGGTTTCTAAAATGTATCTTTTACCTCTCATCATTTCTACTTTTTACAAAGGCATTTAGAAAAACA CCAATTATTGATAAGGTATCTATTGTAATTTTCCATTTGGAGAGGTGTTCCACAACTTCCACTTTCAACGTCTCTCATAA AATTCTAAGTGGATAGGTAGAGAAGTTTTTTTCTTTTCCCTCTCTAAGTGTACACAAGGAGAGCTAGTAGTATTTGATAA GGTATCTATTGTAGTTTTCCATTTGGAGAGGTGTTCCTCAACTTCCACTTTCAAAGTCTCACAGTAACCAAAACACCAAA AAACGACTATCGAAACCTAATCAAAACATGAAACTTACACGAGATTTTTATTCATCTCATTGCCTGGACGATGCATTAAA CTGCTTGTATCGAGTAACTAAAATCACTGAAGTCTCCACTTCATTAAGTAAATCAAATTACATCGTTGTAAAAAGGATGA ACAGGTAAGAAAAATTGAAAGCAAGTATATACAGCATAAACCTTTACATAGAAGCTAAATGATTTCTCAACTCTCCTACA GAAAGAATTGACTCAGCCGGGTATATCTTGGCGACAAGTTGGGCAAAAGTATCGTACTTATCCAGAAAATCCTTCTGTCA TAGTTTTAAAACATAATTTACGTGAATAAAAAGATTTAGTAAAATGTATCAATAATATGCTACAAAATTTGCAAGTAAAT GGGGTAGTATATGATCTGGTGCTCTATTATAACTCTCAATTTGGAGAGGTGTTTCCCTTTCAATGTATCACAGTATCAAA ACACCAAAAAATGACTATCGAAACGTAATCAAAGCATGAAACTCCCACGAGATATTATTGATCTCATAGTCTGGCTGATG TATTCAGGTGCTTGTTTCAAGTAATTAAAATCACTGAAGTGCACTTCATTAAGTAAATCAAATTACATCGTCGTAAAAAG AATGAATAGGTATAAAAGATTGGAAGCAAATATATACAGCATGAACCTTTACATGGAAGCTAAAAGATCTCTCAACTCTC CTACAGAAGGAATTGACTCGGCAGGGTAAATCTTGGCGACAAGTTGGGCAAAACTATCGTACTTATCCAGAAAATCCTTC TGCCATAGTTTTGGGGAAATGACAATCAGAAATTGTTGCATGCAAGTTACTTTGTTCTAGGAGAAATTCTAGGCATGTCC AGTTTGTATTTTCATTTATCATTTAGTTTTAATTATAAATCCACCATTATTATGATCCTATGGACCTAAAGTAATTTGTC AGTCCTAAGTATGTCGGGGACTTGAAGCACTTAAAAGTCTAAGAGTCCAACACAGAAGGGTTCATTTATTACATGCATCT TCTAAGTTTGTAGAATTGCATCAGTAATGCACGTGGTGATACTACCAAAGCAATCACATGACCTTTGCAATTTGGCCTTG GAAACGTTTACCATATGATTTTCGGTTCATTCTTATTTTGTGTTAGTCAATTGGAATTAAGTTCACGTACCTTGCATTTA TCCCATAAGGAAGGCAGCAATTCCTCTGAAGTCAAGTTCTTCTGCAATTTCTTATACATTGCACCAATAGACTTGTCCAC CTTTACAGGAAAGTAAAGACATAATTCACAAAGTAAGCCGCTTGCCAAAGGGTTATAAAAAAAGATAGGCACCACCTTAC CCCAGATAAACTAGATTTTAGCATCTTCCGAAGATCAACTTTTGACAGCCCAATCTGGAAAGGGACCTGAAATGGACATA GAACACTAGTGAGGGTAGAATGTAAATATCCAGATAAAAATGTTAATTTTGGCTATCTATTCACACACGATAAAAAAGGT AAATATACAAAAATGAGTAGCCCATATAGACTGACTTTAATCAAAATGAATACCTCAAGACAATTCGATACATTTTGATA AATTTAGTCTGCTTTTCATTGCATATACTGGGAGGGGAACCTCGGAAATTAGTGTAATAAACTATTAGACCTTCAACTTT CCATACTGTCATGAACCAATTATCCCAAAAGCTTAGGTTTTGAGTAAATGACACATCAATGGTTGTATATTACTATATCA TATTCTAACACGCCACCTCACGCAAGAGCTCTTTTTGGGCTTGAAGCATGGACAATGCACAGACCCACCCGCCTTATGCT GAAATTCAACTTTTTTTATTAGAGTAGTTGAGGGTGACAAGCATCGAACTCTAGACCACTTGGTCATAGAGAGTCTCATA CCATGTCATAAACCAATTAGCTTTTGGGTAAATGACATATGAATGATTTTATATTATATTCTAACACATACTTTACACAT GGTGCCCATAAAGGATTTTTAGACTTGTTCTACAATGATTACTTCTATCAATGTACGAGAAACATTGCAAATAATTGTTA ATTGAAAAAATTCAAGATGGCAGGATCTATGAAAGATTATCAAACAGAATTGTACATAACAAACCTCTTCAGGTTGAAGG TTATTGAGAATCAAGTCCTCAATCCTTCGAGCAAACTGGAAGAGGCGTTCAAATTGCTTTACAAGGAAGAAAAGGGATAA TGAGTTATGTCCTACAGGCTATAAATTCAAGTATGGTCAACAAAAAGTCAGAAAATAGAGAACGGAATACTCACATAGTA GATAATCATGCTGATGTGGCGTGTACAAGCTTGCTCATAGGCTTCACTAGCCTGATGATAAAACTTGGCCAAAGTGGGCA CCACGTTGGCAAGGTCATACAAACT
CDS sequence (LotjaGi1g1v0416100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACTTAAAACCCTATGTTGCGCTCTTCCCTCTCAACCCCTTCGTTCTCAAACAATTGGAATCCATAGCCCCTTCAA GTATCAGAGACAGAGATTTGGGTTTGGAAACTCCTCTAAATGTTTGAAATGGGTGATTAAAGAGCCTTCTTTGTTTGGAT TGAGCAAATTTCAAAGGCCTATAGTTCATGCTTCTGAGTCTAGTGTAAATGGTAGCTTGGAAGTTCATCCGGGCGAAAGT TCGAGTGTGCCTGTTGTTGATGTAAATGGTGGCTTGGAAGTTCTTCCAAGCCGAAGTTCTGGTGTGCCGGTTGATGCGTA TAATGGGGTGGAGCCGTTTCGTGGTAAATCGGGTTCGGTTTCATTCTGTGGGTTGACACACCAGCTGGTTGAAGAAGGGA AATTGGAATCTGCTCCTTTTAATGAAGAGGAGAGCTCTTACTTCTGGCTCTTAGGTCCTGCTGCATTCCTGTCATGTTTG ATTCTGCCGCAGTTCTTTGTTGGCAATGTGGTTGAGGCTTTCTTTAATGATATGATTTTAGTAGATATTGTGAGTTCATT TACTTTTGAGGCACTGTTCTACATTGGACTTGCAACATTTTTGCATGTGGTTGATCGTGTCCAGAAGCCGTATTTGCAGT TTAGCTCAAAAAGATGGGGTCTCATCACTGGCCTCAGAGGATACCTATCCTCTGCATTCCTCACAATGGGTTTGAAGGTC GTTGTTCCTCTCCTTCTTTTGTACGCAGCCTGGTCCGTTGCTCGCCTGGCCGTAATTGTTGCTGTAGCTCCTTTTTTAGC TGGTTGTGTTATTCAATTTGCATTCGAGAAATATTTGGACAAGCGTGGTTCAGCTTGTTGGCCTCTAGTCCCGATAATAT TTGAGGTATACAGACTATATCAACTTACAAAAGCTGCTCATTTTGTTGAGAGGTTGATGTTCTCTTTGAAAGGGCTTCCT GCCACCCCTGAAATACTAGAACGAAGTGGAGCTTTGTTTGCAATGATAGTGAGCTTCCAAGTACTGGGAATTGTGTGCCT TTGGTCATTGATGACATTTCTCGTGAGGCTGTTCCCTTCTAGGCCAGTAGCAGATCATTACTGA
Protein sequence (LotjaGi1g1v0416100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELKTLCCALPSQPLRSQTIGIHSPFKYQRQRFGFGNSSKCLKWVIKEPSLFGLSKFQRPIVHASESSVNGSLEVHPGES SSVPVVDVNGGLEVLPSRSSGVPVDAYNGVEPFRGKSGSVSFCGLTHQLVEEGKLESAPFNEEESSYFWLLGPAAFLSCL ILPQFFVGNVVEAFFNDMILVDIVSSFTFEALFYIGLATFLHVVDRVQKPYLQFSSKRWGLITGLRGYLSSAFLTMGLKV VVPLLLLYAAWSVARLAVIVAVAPFLAGCVIQFAFEKYLDKRGSACWPLVPIIFEVYRLYQLTKAAHFVERLMFSLKGLP ATPEILERSGALFAMIVSFQVLGIVCLWSLMTFLVRLFPSRPVADHY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 367 | 367 | 1.1E-152 | – | |
| Phobius | 1 | 146 | 146 | - | – | |
| PANTHER | 1 | 367 | 367 | 1.1E-152 | – | |
| TMHMM | 146 | 168 | 23 | - | – | |
| Phobius | 147 | 167 | 21 | - | – | |
| Phobius | 168 | 178 | 11 | - | – | |
| Phobius | 179 | 204 | 26 | - | – | |
| TMHMM | 183 | 204 | 22 | - | – | |
| Phobius | 205 | 224 | 20 | - | – | |
| Phobius | 225 | 250 | 26 | - | – | |
| TMHMM | 227 | 249 | 23 | - | – | |
| Phobius | 251 | 255 | 5 | - | – | |
| TMHMM | 253 | 275 | 23 | - | – | |
| Phobius | 256 | 275 | 20 | - | – | |
| Phobius | 276 | 331 | 56 | - | – | |
| Phobius | 332 | 358 | 27 | - | – | |
| TMHMM | 336 | 358 | 23 | - | – | |
| Phobius | 359 | 367 | 9 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0416100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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