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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0419800 |
| Transcript ID | LotjaGi1g1v0419800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cbs domain protein; TAIR: AT1G47271.1 Cystathionine beta-synthase (CBS) family protein; Swiss-Prot: sp|Q9LEV3|CBSX3_ARATH CBS domain-containing protein CBSX3, mitochondrial; TrEMBL-Plants: tr|A0A072V470|A0A072V470_MEDTR Cystathionine beta-synthase (CBS) family protein; Found in the gene: LotjaGi1g1v0419800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91334400..91338206) extracted from Lotus japonicus Gifu genome v1.2.
GGGAAAATAAGTTATTTTTTTGGTATCAAACTGTTTGAATGTCTAAGCCGCTTTTTCGTTGAATTTTGACATTATCAAAA TTATGTTTAAGGTTTTAAATTACGGCTGCATCATAGACTCTCGGTTGTGTCGTGGTCTTTCTATTGCAGAAAATTGTAAA CAAACACGGCTGTTACGACTGAAATCACGGTCGCGTTGCGGTTTTTGAAAGTTCCAAAACCTTTGATGTCACAGTGAAAA TTACAGTTGCAGACATTTAAAACTAAGTTATTTTCCTAAGATCTTGCACACCAAAATTAAGACATGTTTGTTAAGAAAAT GAAAACATAATTATTTAATATAGTGAAAGACTAGTTTTGAAGCATTTCAAGCATATCCAATATGGCTGAGCAGCTTTGAA GACTAGTTTGTAAACGAATGGTCATGAATTTTTCATACTCTTTCTTGATACAAATGTATATATTTTGGCGCAGAAAAAGT AGCTATGTTGTTAACATTAACAACGAAATATCAAAATCATGTTATCATATGATCTCAAGTGAATAAGAGACTGTAATTTG TTGCAGAATCCCATAATCCTTTTTATCCTGAATTTCTAACCTCACCACAACTGACTTTGCAACCATGACGCCGAGGCTTG TCAGGGTTATCAGGATCAGAGTCACTAGGTTCCAGGAGAAGACCTCTGAGGCATCGTCTTCGAACAATGGGAGTGGGAAC ATGATTTAACCTCTCTGCCCGGTGAATCTTCACTTCAGGCCTGGGATTTTCCTTTTCAAAACATTGTTTATCCTCCTCAG GCTGTTGTTGAAGAATCACACGAACACCAGGGTCTCTTCCATTGATTGAACCGTGGGAGATCAATGAATTATTCATGCTC TGTATGTTGCTGTTCACATACGAAGAAGAGTTTTCTTCTCCATGTATTGATCCATTTTTCTTCCTTGTTGATTCGGCCAC TTGCATTGTTGCTCCTCTGTTCTCACCAGCTAGAGTCATGACACTCACTCTTTTCTCATCCACAGTGGCTAGTTTATGAT CAAAATTTGAAATGTCATCATCTATTGGCTTCTCATCGTTGGATATGGATGATACTTCCCTGATCACTGGATCTGAAGAA GCAGCAAGTTTGATGTCTTTTCCGCTGGAGCTAGGAAACACCATCTTCCTCTCTGATGTTAATAAAGATCCATGCTTTAT GATGTCATTGCCTTTTCCTACTCTGATAGGTTCTTCTTCTTCCACCACTTTTTCCTTAGCTTTAGGTTCAGAAGATTGAT GGGATTTGCTTGAAGGACCTGATATCCAAGGGATTCTAAAACGAAGTTGCAGCTTTTTATGTGGCATGGTGTAACAAAAA CAACAGGATGAGTTCTTTAGATTTCATTAGTTGCCTTCTCTACATATATGCAGAACTAAGAATCTATACCTTGGATGTAT TGTAGGAGTTTCATGGATTTTTTTTTTTGTGTTGACTCACTCACCAGTTGTTATTCCTCAGCATTTCACACTGATTCCCT TGAAAGCTTCTTATTATGTGCTTTGCTTCAGATTTATGTTTTAACCAAACATGTCTTGTGGTAACCATTTCTTATATCTT GTGGCGGAGGAAAGAAATTTCTTTTACATCTTACCAAAGAAACCACCAGAATATACTTCCCTTTGAGGTCTAATCATTCA TATCATCCAAAAAGGTTCACCAGTTCCATCAATGTGAAAGCAACCATAAAGTTCCTTTCTTCATATTCTCCTTCAAGAAA AGAATTCAGAGACAAGCAAGTCATAAAGTAAACCATGCCTCCAAGCTATTCTTTGACAAATATGAAATACCAAAGAGGTA GTTCCTTAAACCTTTGCTGCTGGTAAACCAGAACCAACGCTACCAAATACCAAAATACCAATCAACTCTCAAGTATTCCT TGGCAGCAACATCAGGTACATAGAAACAAGTAACAAAAAAAAAATTATAATTTTATTGTTTATTTAATGTCTTAAGTCAC ATATGTCTCCAAGGAAGAACATCTATAATTTCTAGTGGTACTTTATAAACAATAAATTTTAGCCATTGCTTATATTTATT TTGGTTGAACAGAACAAGAATAACAAATGCAAGGAATTTACCGGATACTGCGACCTCACTATTATCCTCCAAGGGCTGCA ATATTTCAACAATACCATGGGAATGGAATCATTAACCCGAACAAGCTATCTGCAGGTTTTGGATGTGTCACAACCTCTCC ACCAATGCAGCAGAAAGGATTGGAGAATGTCACAGTATCTGACGTGCTGATGACAAAAGGGGAAGACAAAAATGGTTCCT GGCTTTGGTGCAGAGTTGATGATGCTGTAATCAATGCAATGAAGAATGTAAGATAGTTTCAATTTGTTCATATGTTTCCT CTAATTATAAGTTTCATAAGATTTGTTAACAAACATGGTGTATGGATTTAGATGGCAGAAAATAATATTGGATCATTGGT GGTGCTAAATCCAGAAGGTCAGCATATAGCAGGCATTGTCACAGAACGAGGTATGAGTTTCCAATTAATTCATGTACTTC AAGTTAAGCTAGAATTTGTGCTACCCTTGTAAACCAAAGCAAACAATAGTGAACAAATGAAAACTTACTGAGACATGCGG TTTTCATCAATATCAAAACACACTTGAACGGCGGTTTATCACCAACCGCCGCTGAAGCGTGTGTTGATTGAATGTCCAAT GAAAACCGGATATCCACGTATAACCACTCTCGCAAATTGAATCTCTTTGTTGGCTACATGCTTGAGCTGGCAGATTGCTT GAAGAAAATAATTGCACAAGGAAGGTCTCCTTTATACACACAAGTTGGTCAAATCATGACTGATGAGGTGATTTTACACT CTTTCATTTCCATTATATACAACTCAATTGAGCATTTTCATTGTGAGTGATGAGGTTACCTGTAAACAGAACAATCTGAT AACAGTGACATCTGAAACCAACATTCTTCAAGCAATGAGACTTATGATAGGTAACTCTTCTGTTGTTCATTTGTCGCAAC TCGCAATGCTTAAGTGATCAAAATTCAAACATCAAAGACCACTGCCTCTTTTTCTTGCAGAGAATCACATCCGGCATGTT CCGGTTATTGATGGGAAAATAGTTGGTATGATTTCCATTGTAGATGTTGTAAGAGCAGTGATGGAGCAACAAGGTGGAGA ACTGAAGCGACTCAATGACTACATCAAAGGAGATTACTATTAAACAAAAAAAATTCAAGCACTGATACACATTTCATGAA GCAAATTGCAAAATCTATGTAGCTAAAACAGAATACATCTTTGTATTTCAATTAGTAATTTGTTTGGTATTCTAATGACT ACCAATTGAATAACATATGATCAATTTCAATAATCATTCAGACAAAAATAAATTATCCATTGCAATTTTGTGCTCTGGTT TAGGGTTTCTACCTTGAGGATCGGATTCGTCTTTGAGCGGCGAGGGATGAGAAGGGAGAGCGAGGGGTCTGAACTGGAAG GGAGAGGAAGGAGTGAGGAAGCGCGATTGCCTACGGACGCGCGCCGGAAGGTGGCTGTTGCGGTGGTTGAAGGAGAAAGA GGAGGCGCGATTGGGGTTTGCGCCTACGGAGGCGAGACGGACGCGCACCGGAAGGTGGCTTGCGTCTACGGAAGCGAGAT GGGCGAGCATCGGACGGTGGTTGAGATGGCGGAGAGGGAGGGTAGGGGAGCGGGTGAAAGCGGTTGTCGCCATTTTTGGC GGCAAGGAATGACGTGAACGAACCGCCACGGAATTTGGGCTTAATTT
CDS sequence (LotjaGi1g1v0419800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGGAATTTACCGGATACTGCGACCTCACTATTATCCTCCAAGGGCTGCAATATTTCAACAATACCATGGGAATGG AATCATTAACCCGAACAAGCTATCTGCAGGTTTTGGATGTGTCACAACCTCTCCACCAATGCAGCAGAAAGGATTGGAGA ATGTCACAGTATCTGACGTGCTGATGACAAAAGGGGAAGACAAAAATGGTTCCTGGCTTTGGTGCAGAGTTGATGATGCT GTAATCAATGCAATGAAGAATATGGCAGAAAATAATATTGGATCATTGGTGGTGCTAAATCCAGAAGGTCAGCATATAGC AGGCATTGTCACAGAACGAGATTGCTTGAAGAAAATAATTGCACAAGGAAGGTCTCCTTTATACACACAAGTTGGTCAAA TCATGACTGATGAGAACAATCTGATAACAGTGACATCTGAAACCAACATTCTTCAAGCAATGAGACTTATGATAGGTAAC TCTTCTGTTGTTCATTTGTCGCAACTCGCAATGCTTAAGTGA
Protein sequence (LotjaGi1g1v0419800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQGIYRILRPHYYPPRAAIFQQYHGNGIINPNKLSAGFGCVTTSPPMQQKGLENVTVSDVLMTKGEDKNGSWLWCRVDDA VINAMKNMAENNIGSLVVLNPEGQHIAGIVTERDCLKKIIAQGRSPLYTQVGQIMTDENNLITVTSETNILQAMRLMIGN SSVVHLSQLAMLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 160 | 160 | 1.8E-64 | – | |
| PANTHER | 1 | 160 | 160 | 1.8E-64 | – | |
| Gene3D | 50 | 166 | 117 | 1.3E-22 | – | |
| SUPERFAMILY | 52 | 160 | 109 | 7.07E-19 | – | |
| ProSiteProfiles | 62 | 127 | 66 | 10.55 | ||
| Pfam | 73 | 119 | 47 | 5.3E-6 | ||
| CDD | 75 | 157 | 83 | 1.78786E-26 | – | |
| ProSiteProfiles | 135 | 173 | 39 | 5.612 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0419800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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