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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SSF54631
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 122 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 0.035s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0055669.1
n.a. PREDICTED: chloride channel protein CLC-b-like [Glycine max] gi|356571521|ref|XP_003553925.1| chr0 17999399 18004092 +
1 domain prediction
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Lj0g3v0059619.1
n.a. PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max] gi|356556126|ref|XP_003546378.1| chr0 19753087 19759550 +
1 domain prediction
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Lj0g3v0113969.1
n.a. PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Glycine max] gi|356498190|ref|XP_003517936.1| chr0 49846411 49846982 -
1 domain prediction
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Lj0g3v0197239.1
n.a. Meiotically up-regulated gene 70 protein [Medicago truncatula] gi|357520151|ref|XP_003630364.1| chr0 96182437 96184088 -
1 domain prediction
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Lj0g3v0199579.1
n.a. PREDICTED: chloride channel protein CLC-c-like [Cicer arietinum] gi|502126612|ref|XP_004499372.1| chr0 98001372 98004834 -
1 domain prediction
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Lj0g3v0228969.1
n.a. PREDICTED: chloride channel protein CLC-f-like isoform X1 [Cicer arietinum] gi|502127375|ref|XP_004499681.1| chr0 118455244 118459820 +
1 domain prediction
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Lj0g3v0239459.1
n.a. Inosine-5'-monophosphate dehydrogenase [Medicago truncatula] gi|357482805|ref|XP_003611689.1| chr0 124234040 124237184 +
1 domain prediction
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Lj0g3v0291799.1
n.a. PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Glycine max] gi|356514029|ref|XP_003525710.1| chr0 151410190 151412027 +
1 domain prediction
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Lj0g3v0291839.1
n.a. SNF1-related protein kinase regulatory subunit gamma [Medicago truncatula] gi|357477103|ref|XP_003608837.1| chr0 151412905 151413070 +
1 domain prediction
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Lj0g3v0291859.1
n.a. AKIN gamma [Medicago truncatula] gi|32364482|gb|AAO61674.1| chr0 151413193 151413523 +
1 domain prediction
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Lj0g3v0303929.1
n.a. PREDICTED: DUF21 domain-containing protein At4g14240-like [Fragaria vesca subsp]. vesca] gi|470108753|ref|XP_004290673.1| chr0 158331043 158334658 +
1 domain prediction
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Lj0g3v0303939.1
n.a. PREDICTED: DUF21 domain-containing protein At4g14240-like [Cicer arietinum] gi|502079099|ref|XP_004486154.1| chr0 158334727 158336587 +
1 domain prediction
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Lj0g3v0307699.1
n.a. PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max] gi|356574949|ref|XP_003555605.1| chr0 160604987 160611940 +
1 domain prediction
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Lj0g3v0317569.1
n.a. PREDICTED: chloride channel protein CLC-d-like [Glycine max] gi|356497470|ref|XP_003517583.1| chr0 165906816 165915354 +
1 domain prediction
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Lj0g3v0317569.2
n.a. PREDICTED: chloride channel protein CLC-d-like [Glycine max] gi|356497470|ref|XP_003517583.1| chr0 165906816 165915354 +
1 domain prediction
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Lj1g3v0270450.1
n.a. PREDICTED: DUF21 domain-containing protein At4g14240-like [Fragaria vesca subsp]. vesca] gi|470108753|ref|XP_004290673.1| chr1 3278572 3282215 +
1 domain prediction
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Lj1g3v0270460.1
n.a. PREDICTED: DUF21 domain-containing protein At4g14240-like [Cicer arietinum] gi|502079099|ref|XP_004486154.1| chr1 3282321 3284202 +
1 domain prediction
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Lj1g3v1077730.1
n.a. PREDICTED: sucrose nonfermenting 4-like protein-like isoform X2 [Cicer arietinum] gi|502113314|ref|XP_004494610.1| chr1 13218354 13225730 +
1 domain prediction
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Lj1g3v1363200.1
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein [Medicago truncatula] gi|357464823|ref|XP_003602693.1| chr1 16366827 16373285 -
1 domain prediction
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Lj1g3v1363200.2
n.a. Octicosapeptide/Phox/Bem1p domain-containing protein [Medicago truncatula] gi|357464823|ref|XP_003602693.1| chr1 16367446 16373285 -
1 domain prediction
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Lj1g3v1500470.1
n.a. PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Cicer arietinum] gi|502133303|ref|XP_004501712.1| chr1 17892236 17907543 +
1 domain prediction
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Lj1g3v1500470.2
n.a. PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Glycine max] gi|356508821|ref|XP_003523152.1| chr1 17892661 17907543 +
1 domain prediction
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Lj1g3v2809270.1
n.a. PREDICTED: CBS domain-containing protein CBSX6-like [Glycine max] gi|356568477|ref|XP_003552437.1| chr1 31964337 31964668 -
1 domain prediction
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Lj1g3v2809320.1
n.a. PREDICTED: CBS domain-containing protein CBSX6-like [Glycine max] gi|356568477|ref|XP_003552437.1| chr1 31966894 31967315 -
1 domain prediction
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Lj1g3v3384560.1
n.a. SNF1-related protein kinase regulatory subunit gamma [Medicago truncatula] gi|357467315|ref|XP_003603942.1| chr1 38905243 38906421 +
1 domain prediction
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Lj1g3v3384570.1
n.a. PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Cicer arietinum] gi|502130892|ref|XP_004500805.1| chr1 38906569 38907397 +
1 domain prediction
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Lj2g3v0536880.1
n.a. PREDICTED: chloride channel protein CLC-c-like isoform X1 [Cicer arietinum] gi|502162871|ref|XP_004512643.1| chr2 7287777 7295930 -
1 domain prediction
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Lj2g3v1337700.1
n.a. SNF1-related protein kinase regulatory subunit gamma [Medicago truncatula] gi|357486631|ref|XP_003613603.1| chr2 21011285 21013073 -
1 domain prediction
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Lj2g3v1892030.1
n.a. PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like isoform X2 [Cicer arietinum] gi|502160793|ref|XP_004511900.1| chr2 28150722 28156392 +
1 domain prediction
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Lj2g3v3248950.1
n.a. PREDICTED: DUF21 domain-containing protein At1g55930, chloroplastic-like [Glycine max] gi|356553522|ref|XP_003545104.1| chr2 41594923 41605213 -
1 domain prediction
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Lj2g3v3413340.2
n.a. PREDICTED: chloride channel protein CLC-e-like [Glycine max] gi|356554044|ref|XP_003545359.1| chr2 43166943 43172662 +
1 domain prediction
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Lj3g3v2769390.1
n.a. PREDICTED: inosine-5'-monophosphate dehydrogenase-like [Cicer arietinum] gi|502107091|ref|XP_004493154.1| chr3 34124118 34127471 -
1 domain prediction
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Lj4g3v0000060.1
n.a. PREDICTED: chloride channel protein CLC-c-like [Cicer arietinum] gi|502126612|ref|XP_004499372.1| chr4 52608 56070 +
1 domain prediction
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Lj4g3v0412710.2
n.a. PREDICTED: DUF21 domain-containing protein At2g14520-like [Glycine max] gi|356524776|ref|XP_003531004.1| chr4 5405345 5409458 -
1 domain prediction
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Lj4g3v0620370.1
n.a. PREDICTED: CBS domain-containing protein CBSX2, chloroplastic-like [Cicer arietinum] gi|502143182|ref|XP_004505249.1| chr4 9601806 9608184 +
1 domain prediction
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Lj4g3v0620370.2
n.a. PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Glycine max] gi|356499765|ref|XP_003518707.1| chr4 9602048 9608184 +
1 domain prediction
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Lj4g3v1388280.1
n.a. PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Cicer arietinum] gi|502176183|ref|XP_004515816.1| chr4 21288739 21292455 -
1 domain prediction
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Lj4g3v1893220.1
n.a. Cl-channel clc-7 [Populus trichocarpa] gi|224120342|ref|XP_002331024.1| chr4 26877774 26883645 -
1 domain prediction
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Lj4g3v2367350.1
n.a. PREDICTED: sucrose nonfermenting 4-like protein-like [Cicer arietinum] gi|502151115|ref|XP_004508285.1| chr4 32579276 32584880 +
1 domain prediction
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Lj4g3v2367350.2
n.a. PREDICTED: sucrose nonfermenting 4-like protein-like [Cicer arietinum] gi|502151115|ref|XP_004508285.1| chr4 32579276 32586241 +
1 domain prediction
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Lj4g3v2367350.3
n.a. PREDICTED: sucrose nonfermenting 4-like protein-like [Cicer arietinum] gi|502151115|ref|XP_004508285.1| chr4 32579906 32586241 +
1 domain prediction
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Lj4g3v2400520.1
n.a. PREDICTED: DUF21 domain-containing protein At4g14240-like [Glycine max] gi|356521943|ref|XP_003529609.1| chr4 33038255 33045561 -
1 domain prediction
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Lj4g3v2845100.1
n.a. PREDICTED: CBS domain-containing protein CBSCBSPB3-like [Cicer arietinum] gi|502139757|ref|XP_004503889.1| chr4 38007849 38011649 +
1 domain prediction
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Lj4g3v2916510.1
n.a. PREDICTED: CBS domain-containing protein CBSCBSPB5-like [Glycine max] gi|356511510|ref|XP_003524468.1| chr4 38794869 38798213 +
1 domain prediction
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Lj5g3v2266290.1
n.a. SNF4b [Medicago truncatula] gi|32364484|gb|AAO61675.1| chr5 33130740 33135360 -
1 domain prediction
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Lj5g3v2297970.2
n.a. PREDICTED: DUF21 domain-containing protein At1g47330-like isoform X1 [Cicer arietinum] gi|502131534|ref|XP_004501015.1| chr5 33814011 33818812 -
1 domain prediction
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Lj6g3v1422220.1
n.a. PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max] gi|356556126|ref|XP_003546378.1| chr6 16908036 16914225 -
1 domain prediction
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Lj6g3v1537040.1
n.a. PREDICTED: DUF21 domain-containing protein At5g52790-like [Glycine max] gi|356561500|ref|XP_003549019.1| chr6 17646333 17651816 +
1 domain prediction
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Lj6g3v1537040.2
n.a. PREDICTED: DUF21 domain-containing protein At5g52790-like [Glycine max] gi|356561500|ref|XP_003549019.1| chr6 17648439 17651226 +
1 domain prediction
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Lj6g3v1537040.3
n.a. PREDICTED: DUF21 domain-containing protein At5g52790-like [Glycine max] gi|356561500|ref|XP_003549019.1| chr6 17648439 17651816 +
1 domain prediction
 –