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LotjaGi1g1v0421900.1

Overview

Field Value
Gene ID LotjaGi1g1v0421900
Transcript ID LotjaGi1g1v0421900.1
Lotus japonicus genome version Gifu v1.2
Description Bifunctional nuclease 1; TAIR: AT1G75380.1 bifunctional nuclease in basal defense response 1; Swiss-Prot: sp|Q9FWS6|BBD1_ARATH Bifunctional nuclease 1; TrEMBL-Plants: tr|B7FJ72|B7FJ72_MEDTR Wound-responsive family protein; Found in the gene: LotjaGi1g1v0421900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:91585514..91590364) extracted from Lotus japonicus Gifu genome v1.2.

TCCTTTTCATTTGTTTTTTCTTTTCTTTTTCTCCTGTACCAAATAGAGAAATAGTTAAGTTTAAGAATCAATTATATATG AGATTTTTTTTAAGAAAATAAAAGTTTGGTGTGGTGTTAATCTAGAGGAATTAAAAGCAGGGAGGGTAGAAGGGTGATTT CACTTAATTATCTGAATACGATGCATGCGGTGGATGAATGGTTACTCAAAAGATATTTACGATCCTGCCAAATTAGAATC TCTTATCCTCTCCTTTTAATTCCCCTTCATTCTCTTACTCCAGATCTCAATTTCCCACTCTCAATTCTCATTTCTACATG ATTCTCTGAATTGATTCTACCCTAACAAGCATCAATCAAAACTCTCTGAATCGATTCTTCCTTTTCCTACATAATCTTCT CAAATCCGTGAGAAACAAGCAAATTACCGTGATCCCTGAGGTGACTGATTCTGAATTAATCGATTTCTCTGTGACCCAGA ATCATAAATCCATGTAACTCACCGATTTGGGATTTTGTGTAGGTTTTTTCTGAAATGGGTTCTCTGAAAGGACCAGTTGT TTGCCTTGCTAAAGTAGCAGGGTCTTGCAGTGTTTCTATGCCTATGATTGGATCAATGAACTCTAGAACTGAATTTTGGG GACTCACTGGTGGTGGTAGCAAAGGTAAAGCCAGTGGTGCCCTTTCTTCTCATGTGAACATGAGAAGGTGCATGACTGTG CATTGCAGCTTCAACTCTTCCTCAAATGGGAGTGGAAGTATGGCAGAAAATTTTAATCAGAATGATGAAGATTATGTTAA CTCCAGTATTGTTGAAGCTGGTATGATTAATATTGTTTAGTTTAGCTACAATAAGTTATGTAGTTATATTTGTTAGTTTA TTGATTGATGATGAAGCCTGACTTGGTGATCAGTGTGATCTATGTTACTATATACTGATAGACTGTGCTGTGATGTTGTT GTGTAGTTGAGGTGAAGAGTGGAGCAGATGGTTTTCTGATCAAGATGAGGGATGGTAGACATGTGAGATGCATCCACAAC AACCCTCAAGGAGGGCTGCTTCCTGATTATGCACCCCATCCTGCTATTGTGTTGAAGATGGAGGATGGGACTGGTCTACT TCTACCCATCATTGTTTGTATGTCTTTTACTCCCTATGTGTATTTGGATATAAGTTAAGTATGAAAGTTAATCACTTTTG ATCATTTTTTATGTGTAAGTGAGTGGTAACATCGATTTGTATTGGTGGTACCAAGGGATATTTAAACATAGCATAAAATT TACTTCTTACATACTGTTATGGTAATATTACATGTTTCCCACCCTGAATTTGTGGTTTGTCTTTATTTGCAGTGGAGATG CCAAGTGTCTTATTAATGGCAGCAGTACGCAATGTTCAAATAGTATGTCTTCTCAGATTTATTACTAGTCAAATTTGGAT CCAGAATGGTTATGCTTTTCTGTGACTTACCTTCATGGATACTAACTATTTTGGCTTATAAAAAAAAGGATTCTAACTAT TTAGTTGCTGTATCAGGCAAGACCTACTTTATATCAAGTAGTGAAGGAGATGATTGACAAGATGGGTTACCAAGTATGGT TCTGTTTTTATCTGTGTGCTGTTTCACTCTCCTTAACTTGATTGTAGTGTGATATTTCATTCATGCTGTCCTAATGATAT TAATAATCAAATGGGATAATTTTCTGCTTATGCAGGTCAGAGCTGTTAGAGTTACTAAGAGAGTTCATGAGGCATATTTT GCTCAGATATATCTTTCTAAGGTATTTTACTCACTTTGACACTTTTCCTTTCTGCCCCATCAAAAAAAATTCCCGAAGGG TTGTGTTAATGTGTGTGTGACTTATGCTTGGTATAGGTTGGAAATGAGGAAGAATGTGTGAGCTTTGACCTTCGACCTTC AGATGCTATCAACATTGCTGTTAGATGCAAGGTAATCTATGTAAATTCAATCATATGAATACATTATATCACTTACAGCA TAGTACCTTTTCTTATGGCTTTGCTTAGTCCTTGTTGATTGTGCCTTAGTTCATGTTAGAAAACTTCTGGGAGAAAAGAC ATTTACTTTTGGGACAAGCTTAAATTGTTGAGCCAAGTTTTATATGCTTTTGGATTCACTGTTGGATAGTTTTGTGAAAT GTTGCCTATTAGGACCAAATTCCAAATATTATAAGTTTGATAACTTAAATGAAACTTGTTTACCATAGTTTTAACTGGTA CCCCATTGTTGTAGGTGCCAATACAAGTCAACAAGTATTTGGCATACAGTGATGGAATGAGAGTAATTGAGTCAGGCAAA CTTTCAACACAGTCTCCTGGTTCAGACGGCCCATTATTCACTGAACTGGACCGGTAGGTTTTTTATGATTCATTTTAAGC CCATATGACTTATCTGTGGTATGAATAATTTCTGTTCTGGGCATTTTTTTAGATATTAAACTGTTGGAATCAGTCTCATT ACGAGCTCTTTTTCCATCTTGAAGTACTAGTTTACTAACGGAAAGTGACTTAATGCAGACCAAGCAATAAGCCTTGTACT GAAACCAAGGAGTTCAATCTTTTGGAGAACATGATGAAAGCTGTTGGAGAAGAACGCTATCAAGATGCTGGTAATTATTT TCTTTCTTATTATTTCTTTAATTTATTTGTTTATTAGGTTTTCAATTTTCTTTCTTTCTTTGTATGATACATGATGCATA ACAGAAGTTTTATTGATGTCATGTACATGTATGATGACTGAGCCTGCTAATTATATTCATTTTGATTGTAGTCCACAGCA ATGTTTTGATGCTTTGACCCTTACCAGTTGGAGCAGTCAACTTAAACTGTTCCAATTTCATCACCTTTATAAACTTTATT TGGTATTATTACTTGAAATAAGAAGCCTGTAATGTATAAAGCAACGGAATTTTTGTAGTAGTCTATCAGCAGATGTGCTA CTATAAGCTTAATTTTTATTCTTATTTTTCTATCGTTTTGAAGCTTAACATGTTTTAAAAGTCCATTTCAGTTGAGTGAT TTTTCCTTGGTTTGGTACATGCATTAAATTGGGTTTGGGATGTAAGTTGTGCAAGATTACATTTCTTATGAACTAACTAT ATAAGATTGTACATTTGTACCTCTCGTTTCTTATGCAACTTCAGCTCTTTGGAGGGACAAACTTAATCAACTTAGGGCTG GAAAGAAGGCGAATAACAGGTATTAAGCTTATTTCACAGACAAATTGACAATGTCTGATGCTCTGTAATAAGAAACTTGT ACTTGAGTCATCTCCACCAACTCAACCTAGTTCTGATATCTTTGTTCTGTTCTTGACAGCTTTATATTAAGTTGACAACT TTTGTTCTATTGCAGATCCTGGACACTATGAAATTGTATATACCATCCGACATTAGAATATCAGTGGGAATTGGTAGAGA AGATTGCTGTCAAATCATTCCCTTCTTCCGCTTGTGTATACGCTTAATATGTTTGTGAATATTTGTGTATATATCTAAAC ATTAACAGAAATGCATCATGTATTTTGCTTTTCCACTACTTGTTTCAATCCTCCCGAGCTGTAAATATGTAATTATGTAT CCTATTCCATCCATTGGATGCAGCTTCTTGCTGATGGTTGTGTTGTATTGCAGGGTTTGGAAAAAAAATTGGGATGATTG AATAAAATGCTGTTTATATAAATTGTTGAATTTCCTGGATTTTCTGCGTCCGCTTCATTATTATTATTAGGCTTAATACA TCAGAAGACCCTTGAAATTGTAAAGGGAATCAATTCCAGGACCTGTAAAATTTTCGCATCAAATTGGGTCCCTAAGATTT TTTTTTTAATTCAATTAAGGTCAAATGCTGCCGGACCTTAATTTTGTCCTAGTCATCAATTACATGTGGCTTTTATATAT TTTTTTAATTAAAAAATAAAAAAAAAAAATTTTAATTCCAACTCAATTATTTAATCAGAAAAAAAATTTAAAAACTTAAT AAAAACCTAATATAATAATCCCTTAACTAAACAATATAATAAACTAATCTAATAATATAATTTAATTATAACAAATCCCT AATTAAACCCTTTCATCCTCAAATTGAACCCAAACTCAAACGGCGAGCAGATCTGATTTAAAAATATCTCGCTTTCATTC CCCATATTTTGTCTGTGTGATTCGTTTCCCTGCGTTGCGGCTACATCGGCGGTCATGTGGAAGTGTGGGTGGTCGGTGGT TTTTATGGGCGCGGGATATCCTCCATGCCCAGAAGTTGTTGCATCTCTGATATCCTCCATCTCCCATTTTCCTTTCTTTC TGTTTCCCCTTTGTTTCATTTTCACCTGGCTGAGAAATAGGTTTATGGGTTTGAATGGTGGAAGGGGCTTTTGGGTTCTG TTCTCGGTGAGTGGTTTGACGGGTTTTTGGTTGAAAGGGTTTCTGGGGGTTTGAAAGGTTTCTAGGTGCTGTTTTGGGTG AGATAGAGAAAGAAAAAGATGACTAAGAAAGTGGAGTGAGATTGAGTGTGTTATGATAAATGGTCATGAGTATTTGAAGA AGTTGAAAAACATAAAGATGAAGAACATTCAGGGGGGTCATTAAGCATATATTGAATGAATAAGTGTAAAATATAAAATG GGTGATTGCAAATACAAAACCATCTCACCTCCCCAAGCAATCACCCCTGCATCTTTGGAATGTATGGGTTAGGGTGGGGG TTTGCTCAGCTGCTGTTGTGGGATGGGGTTTGCTGTGTGTTGCAGATGATGAGATGGTGCGATGGAGGTGTCAGGAGAGT ATGGGTTACAAGGTTAGATTTTAAGTTTACAGTAAATTGGGGTTTGAAGAT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0421900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTTCTCTGAAAGGACCAGTTGTTTGCCTTGCTAAAGTAGCAGGGTCTTGCAGTGTTTCTATGCCTATGATTGGATC AATGAACTCTAGAACTGAATTTTGGGGACTCACTGGTGGTGGTAGCAAAGGTAAAGCCAGTGGTGCCCTTTCTTCTCATG TGAACATGAGAAGGTGCATGACTGTGCATTGCAGCTTCAACTCTTCCTCAAATGGGAGTGGAAGTATGGCAGAAAATTTT AATCAGAATGATGAAGATTATGTTAACTCCAGTATTGTTGAAGCTGTTGAGGTGAAGAGTGGAGCAGATGGTTTTCTGAT CAAGATGAGGGATGGTAGACATGTGAGATGCATCCACAACAACCCTCAAGGAGGGCTGCTTCCTGATTATGCACCCCATC CTGCTATTGTGTTGAAGATGGAGGATGGGACTGGTCTACTTCTACCCATCATTGTTTTGGAGATGCCAAGTGTCTTATTA ATGGCAGCAGTACGCAATGTTCAAATAGCAAGACCTACTTTATATCAAGTAGTGAAGGAGATGATTGACAAGATGGGTTA CCAAGTCAGAGCTGTTAGAGTTACTAAGAGAGTTCATGAGGCATATTTTGCTCAGATATATCTTTCTAAGGTTGGAAATG AGGAAGAATGTGTGAGCTTTGACCTTCGACCTTCAGATGCTATCAACATTGCTGTTAGATGCAAGGTGCCAATACAAGTC AACAAGTATTTGGCATACAGTGATGGAATGAGAGTAATTGAGTCAGGCAAACTTTCAACACAGTCTCCTGGTTCAGACGG CCCATTATTCACTGAACTGGACCGACCAAGCAATAAGCCTTGTACTGAAACCAAGGAGTTCAATCTTTTGGAGAACATGA TGAAAGCTGTTGGAGAAGAACGCTATCAAGATGCTGCTCTTTGGAGGGACAAACTTAATCAACTTAGGGCTGGAAAGAAG GCGAATAACAGATCCTGGACACTATGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0421900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGSLKGPVVCLAKVAGSCSVSMPMIGSMNSRTEFWGLTGGGSKGKASGALSSHVNMRRCMTVHCSFNSSSNGSGSMAENF NQNDEDYVNSSIVEAVEVKSGADGFLIKMRDGRHVRCIHNNPQGGLLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLL MAAVRNVQIARPTLYQVVKEMIDKMGYQVRAVRVTKRVHEAYFAQIYLSKVGNEEECVSFDLRPSDAINIAVRCKVPIQV NKYLAYSDGMRVIESGKLSTQSPGSDGPLFTELDRPSNKPCTETKEFNLLENMMKAVGEERYQDAALWRDKLNQLRAGKK ANNRSWTL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_GRAM_POSITIVE
SignalP-TM
1 17 17 - –
PANTHER
PTHR15160
1 320 320 4.9E-166 –
PANTHER
PTHR15160:SF3
1 320 320 4.9E-166 –
ProSiteProfiles
PS51658
117 252 136 37.713
IPR003729
SUPERFAMILY
SSF103256
117 255 139 7.32E-38
IPR036104
Gene3D
G3DSA:3.10.690.10
123 258 136 4.3E-24
IPR036104
Pfam
PF02577
133 247 115 3.5E-22
IPR003729
MobiDBLite
mobidb-lite
257 277 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004518
Molecular function Nuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0421900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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