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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0425100 |
| Transcript ID | LotjaGi1g1v0425100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane and coiled-coil domain-containing protein 4; TAIR: AT4G36210.3 transmembrane/coiled-coil protein (DUF726); Swiss-Prot: sp|Q91WU4|TMCO4_MOUSE Transmembrane and coiled-coil domain-containing protein 4; TrEMBL-Plants: tr|G7J4N6|G7J4N6_MEDTR Transmembrane and coiled-coil protein; Found in the gene: LotjaGi1g1v0425100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91966507..91974260) extracted from Lotus japonicus Gifu genome v1.2.
GCATGGTTGATGTAGTGATTGTGTGCTCAAGTCACGGCGAGCAACATGCATTTCCCGCTAGCGCGAGAGAAATAAGCCAT TTCATTATATTCTATTCCTCCGTCAAAGCAAGTGCGAATTTGAAGTTTGAACAAGCTCAGTTATTTTGGTGAATTTTCCT CCCTTTGTTTCATTTTCCTCCAACAAGTCACCACTCACCAACACAATATCACCGCTTCGAAATCTGATATCAGTTAACCG CTTCGGTTTCGTGTAACGCGATGGAGGAAACCCCATCGATGCTGTTGCCACCTACTCATAGATATGCAGCAGGTGCTCTC TTCGCTCTCGCACTTCACCACTCCCAAATTCACCAATCTCCAACCACCGCTCAGAACGCCGCTTCCGTTTCAGACGACCC CGAGCTTTGGATTCACGACAATTTCGGTTTGCTTTCGCCTGTTCTTAGGTATTCTATTCACTCCAATGCATGATTCAACT TAATGCTGTAACTATGGATCTTGATTTTGCATTGTGATTTTAATATGTTGATCAAATCAAAACTATCAGGTTCCTTGGAG TGGATGACCAATCCTCGAATGGCCTAAAGGAAACCGCCGGTTCCTCTTCCCAATTCAGGCATCACCTTGGATCTGTATGT TGTTTTTCATTGTCTTCCTTTTTCATTTTTCTATTTTAGGTTCAAATTTATTTGACATAGAGTTACTGTAATTTCATTCC AGTTCTTGAAATTACTGGCGGAGGAATCTGATGCGAATTCTTCGGAAAGATTGGATAAAGAAGCTGCATTGACCAAGGCT GTTGATGCAATGACTGAGAGCATGAGCACTGCTAGTATTGCTGAATCGTCGTCTGGGGAATCCGGAGGCCATGAGCAGAA GAGCCAAGATTATTTATGCAATACCACCGCTCCTCCGGTTGTTGAGCCCCATAGTGATAGTAAAACTAAAGACAGTGAGA GTTCAGCTTTGCTGCCTCAACAGAAACAAGCTTCCACTGAACTTGAAAATGTAACATTGGAGAAACCTCTGGAGGAGGCA AGTCTGATCAGTTACCAGAGGAAAGTGACAGTTCTTTACGCGCTTGTTTCGGCTTGTGTAGCGGATACGGCGGAGGTTGA CAATAAGTGCTGTCGATCAAGGCAGGGCTATGATGCTCGTCACCGTGTGTCTTTGCGGTTGATTGCTACATGGCTTGGTG TCAAGTGGAATGAAATGGTCTGTGTGCTTGGAAATACGTACATGCTTTTCAAATACTATTATCAAATTATATATTACATT TTTCATGTGTGAATGTTCATAGAAAAAACACTCCTTAATGATGGGGTGTAGAATGTAGATATCGGTATGTCTATGGTTTG TTGGTTGTGGCAAAGTGATTCTTGGGCAGCAATTATTGCTAGAATTTCACCCCCAACATAATATTTTGCAGGAAGCAATG GAGTCCATGGTTGCTTTTTCTTTAATGAATTCATTGAGTGAAGCAGGTGCCAAGGAAGATGAATCTATAGGTTCAGAAAA CAACTGGGATAAATGGAAGCGTGGAGGCATTATTGGAGCAGCTGCTGTAACTGGAGGAACCTTAATGGCTATAACTGGTG GTATATGTCTACATATCTGACTTACTAGTATCTTCATCTAACCCAAAGGTGTGGTAATACCAGTATCGTAAGTGTTGAAA TGCTTTGGTAGGCCTGGCTGCCCCTGCAATTGCCCACGGATTGGGTGCTTTGGCTCCTACATTTGGCAGTATTGTTCCTT TCATTGGAGCTGGTGGATTTGCTGCAGCAGCAACTGCTACGGGGTCTGTTGCTGGATCTGTTGCTGTTGCTGCATCATTT GGAGGTGTGAAACATTTAATACTGGTTTATATAAGTTGTGAAAAACTCCGCCTATACTTGCGTAGCTGGTCCCAAGCCCG GCCAAAGGAGAAGGGTTGTGTTAGGCCTTGGCAGCCAATGTAGAACCTGTCGATATCATCAATATGGATCAAACTTATAT AAGTTGTGAAAGCCTTTACCATTTATACAAGAAAACTGGAAATGCATTCTAGATTGTCTTTATAGATTAAGTATTCTATG GCCATGGACATATATAGATAAAGTATTCTGACATATATAAACTCTTTACTGACATTCATTAAGCAATCTTTTTCAGTGGT AGGCAACACTAGTTGAGTGACTTGGAAAGTTTTTCATTTCATGGGTAATGCTCAGTGACTTGGTTCTTTTGTACCTCAGC TGCTGGAGCTGGCCTTACTGGGAGTAAGATGGCTACAAGAATTGGAAGTCTTGAGGAATTTGAGTTGAAAGAAATTGGAG GCGTTCATCAAGGTGTAAGTTCCAAAATTTCATTATATCATACAAATTTCGCTGGACTATTAGGTGTTTCATGGGTTCAG GGGAAGTGGGGGAGGATGTTTTGGAGGTTTACTATGCACTTTGTGCAAGACTTGCTGATGAACCCATATGGATCTTAATT TTCAGCACCTAGCGGTCAGTATCTCCATTTCTGGGCTTGCATTTGAGGAGAAGGATTTTGTGAAACCTTGGGAAGGTCAC TATGATAACTCAGAGAGGTATGGGAAAATAATCCTCTAGAGCTAGAAGTTTTGTTAAATTTTTATTACTGCACCGTATAC ATGTGCCCATGCTGTGGTCAGAATGCTGTTTTGTCTTTGCAATCCTCTTTGTGGCATTGATCTTGAGATTCACCTTTAAT ATATGGTTTTTATGAGCAAGCTCTTGTATAAGTCAAATATACTACATACGTACTAGAAATTTTATTTCTTGTCTTTAGTT TATTATTTCAGGATACCGTACAGTTAGGGATCGAAATAATGAAAGGGCTGCTTGGAAGGTGCGTCCCTAAATAGAGACAC CTGCACAGCCAAACAGCAGGTCCCGGCTAAACCTGCGCAACCCCTGGACCACCAGGCCCAGGCGCTGAAACAAGCCCAGG CCTCTTCCTCCTAGTGCAGACCTTCCAAGTAGCCCTTTCAGTATTTTGATTCCTAAAACTTACATGTTAAAGTGGAAGGT TACGTGAATGATCAATCTTTTAAAGTATATAATGTCTTACTATCACTTTGTATTGCCGATCCTCTAATTAATTATTAATT TTACTAAATGTTTTATCTGAGTGATTAAAATCTAGTTTCAATTTCAGTTGCATTCTCAATATTTTTGTTGCTTTATAGGT ATGTGCTCCAATATGAGTCTAAAAATTTGATTGCTCTGAGCACTGCCATCCAGGATTGGCTTACTTCAAGTAGTTTCGTT GAACCCTGTGTCTGTTTGAGTAATGATCAAATATATTTGAAATATTCAAACTGAAAGCATGTGATGGTTAATATTTTAGA AATTGCGGTTGAGTTGATGAAAGGAGGCGCCATGATGACGGTATTAAGCACACTTGTGGCAGCATTAGCATGGCCAGCAA CTTTAGTTACTACATTTGATCTTATAGACAGCAAATGGGCAGTTGCTATAGACAGGTAAGTGTTTTTCATGGTCGTAGTA CCCATTTTATATACATGCAAACATGTTATGATGTCCATTTAAAGCGACAAACACATGGAGCCCAATTTTTTTGCAAATGA GACAGATGATAATTCGCTCTAAATTTGTAGTTCTAGGCTTCTAGCATTACTCATGATCTTATGGATTTAATTTTATGGAC TTGAATGTACCATTCAAGAACATATACTTGACATCAAGTTGATAGATCTTTATTGCTAAAGCTAGTAACGTTTTGATGGT ATCTAGTAGTGCTACTTGAGCATATATAATTCTGAAGATAAATTCCATATTGTTGTACACAGCCCATGGACGCCAACCTC GCTTTGAGCTTGTTATTAAAACTTCTCTCATTACCTAAATTAGTTCTGGAAACGTACTTCACCCAAACTTTAGTTATCAA TCTACCTTTTCCATGTATGATTCTTGTTGGTCGATCTTAAGTCTTCATCCATTACTTATCTCTAAACAATCTTTAATGCT TCCTCAAATCCTACAAGCCCAAGTATAGTTACATCACATCTTTCATATTAGCTTGCCTCTCTCTTTGTTGGAGCAGATCC GACAAGGCTGGTAAGGTGCTTGCGGAGGTGTTGCTGAAAGGCTTGCAAGGAAACAGGTGACACCGTCTATTATTATTGTA AAAGGTTGATGGTAATGTTGCCACATTGTATAAAATACAATAATTTGGAGCTTTCTATTATGGTCCAGGCCTGTGACACT AGTAGGTTTCTCGTTGGGAGCCCGTGTTATTTTCAAGTGTCTCCAATTCTTGGCTGACTCTGATGGGGACAATGGTAACC TGGAATCATTGCTTCTTGATTTTCTCAGATATTATGTTTAGACTGTTTGGTGAATAAAATCTTCATATTATGCTAACGTC TACAGCTGGACTAGTCGAAAAGGTTGTTTTCCTTGGAGCACCCATCTCAATTAATGACGAAAATTGGAAGGCCGCTAGAA AGGTACGTGGAAGTGTGAAACTTCTCCACATTTTTTAAGTTCTTCATCCATTGACTTTTTCTTAAGTATTTGATGATCCT ACCACTAGCAGATGGTGGCTGGAAGGTTTGTGAACGCTTACTCGACAAATGACTGGACCCTTGGTATAACTTTCCGAGCC AGGTATGGGCTATCTATATATGTTTAAGCCATGCTAGCAAAAATGTTGGATATTTAACTAAATCTCATTATATCTGTAAT TATAGCAACGACAAGTCGACAACCATGTCTTTGTCACTGAAAGGTAGTAATAGCTTCTTGTGATGGGGAAATCTCTTTAC ACTTGGCTGTCACATTGTAAACGTCAAACAGTTGAAAGTAAAGTGCAACACTTTTTTCACTCCACCCTCCCTATCCGAGC GCATGAAACTTTGAAGTCATGATTTCCCCCCATTATTCAATCTCTACAAAGCAACAATGGTTAAAAATAGAAGATTTTAA ATCCCAATCAAATTTCTCCCCTCTCCTTATTTTCCACTCTCCCTACCAAGCATGCCCTTAAGAGAGCATAAGCTCATAAA TATATTTTGAAATATTTTTGCATGCACAGTTTACTTTCACAAGGATTAGCTGGAATCCAACCTGTTGATGTTCCCGGGAT TGAGAATGTAAGCTCTTCATATCCTATTCTCAATAAAACTGTTTATTAATTTATGATGTATTGCTTGAAGGTGCTATTAT TTTCTTTTGTTGCTGTGCAGGTTGATGTGACACAACTTATAGAAGGCCACTCTTCCTACCTGTGGAAGACACAGAAAATC CTGGAGCAGCTTGAACTGGACAATTATTTTGCTGTTTTCAGGAGCGAACAAGAAAGGCCCCATGAAGAGAAGAGTATAGT GAACTAGCTTCCTTTTCTCCATTCCTCCATTCTTCTCTCCCCCTATATTTGCTTTCATGAGAGATTAATATCAACGAGTT TTCTCTAGGCTACTGCCTGCTCATTTGCCATAGGTATAGGTAAATAAAACTAAAAACTACTCCCTCCGTTCCTATTTATC TGTCCACTTTGAGAAAAATAATTTGTTCCTATTTAACTGTCCATTTAGCATTTCAAGAGAGTATTAAATGATGTTTTTAC AACTAATACCCTTATCAGAATAATAAATGAAGAAAGATAAAAGGCAAATTAAAGGGTAAAAATGAAAAACTAATACTACT TTTATGAAAACCAACAAAATTAATTGCACTCCTTAATATGTGTGTTTCTTCTCTTCCCGGACAGTTAAATAGGAACGGAG GGAGTAGTTGTTTTGGAAGTACTGTCGGCAATGATTTGTATCTTCTATGCATTTGTATTCCTTGCAGTCAAGGGAATCTC ATGTTCATGCATTCAAGCACTTCGTTTCTGAAAGCTCACATTTTGAGTTATTATTCCAAGTTACTTCTTATAACTTCAAA TGTGAGTGGTCTTAAAATGTGCCTCGCCCGATGAAGATCAAACGACTAAAAACGCTTGAATGCGTGAAAGCGGGATTTCT CTTACGGCAAGGAATCCAAATCCGTTTTCTACATGATGCAATGAGAAAGAAGAGTCATCTGGGAACTATGGACAATATGA CCTAGAAGCAAGCATAGGGAGCTTTATTTAAGTGACTAGTGCTAGTTATAAGTCCACCAATAAAACAAGGGAGCGGACTG TGGTAACTGGTAAGTGACTACCAACCTTTTCGCTTGATTGCTAAAGCCGAAATGCCTTGTGAGAATTTACCCAAAAAAAA ATGTCTCCACGGAAAGAAGCTAAACATTATTCTATTCGATCATTACTCATTAGATTAGATTGCTTAATCCTAATCAAGTT AGATATGATAAGGTTGCTTGAAGATTAAGGTAGAACTTAAGTGGTCACCTTAGTCTAGGAATATCAGTTCATCCTTTGAA AGTATTGGCTATTGCCATTAGATATTACTATAACTGACGTATTATCCCTGAATGTAAATGAAGGTGCTTGTTTCAATACA ATGATTTTTGTAATTAAATGTATACATCATGGCTGGTTAGTATTGGTTTTCACGTGGGTGGGTGGATAATTTACTTTTTA AGCCATTGGACTATTTGAGCACCTATCTGGTCCTGTACTTAATTTTATCATCCGTCTCTATTAAACCACTATTTAGGTCT TGTAGCATACGTTCTAATGCTACGGTATCGTAGGCTTAAAGGTCAAGAAATAGTAACTCATACGACAGAGGAAAGGGCGT GTATAACAAGGTGATGGAGGTGGTCAACACCAACAAGTGAATTGATGATGCATGATAAGCCTATACGAGGGTTCATCTTC ATCCTTACCCTTCTCATGTAATTGTTATTGATTAATTTGATGAATGGTGAATTAGAATATTCAAAAAAAAATTGGTACAT CCTCTTTAAAGTTTTCAAATGTGTCCATTGAATATCGACCCAAAAGTATTTTGGTGCTCTGTCGTTAAGAGCATCTCCAA TGCTAGTTCTTATTTCTTAGTTCTTAGCACTATTTATGTGGGCCCGTACTGCCACATGTGTTTAAGCAACTCTATGCACA TTTTGCTCCAACCATGAGTTCTTAGTTCTTAGTTCTTAGCACTATTCATTTGGTCCCACAATATCATTATAGTAGTAATA TTTTTTACTTTCATATAATTTTGATTTAAATTTAAATGCTAATTCAATATCTAAATTAAATGAATTGATGAATGAGAGAG AAAAAATTAACTTTTCATGCTAAGAACTCAAAAAGTAAAACATCTTATATAAGAGCATCTCCAATGCTAGTTCTTATTTC TTAGTTCTTAGCACTATTTATGTGGGCCCGTACTGCCACATGTGTTTAAGCAACTCTATGCACATTTTGCTCCAACCATG AGTTCTTAGTTCTTAGTTCTTAGCACTATTCATTTGGTCCCACAATATCATTATAGTAGTAATATTTTTTACTTTCATAT AATTTTGATTTAAATTTAAATGCTAATTCAATATCTAAATTAAATGAATTGATGAATGAGAGAGAAAAAATTAACTTTTC ATGCTAAGAACTCAAAAAGTAAAACATCTTATATAAGAGCATCTCCAATGCTAGTTCTTATTTCTTAGTTCTTAGCACTA TTCATGTGGGCCCGTATTGCCACATGTGTTTAAGCAACTCTCAAGTAATTTTGCTCCAACCATGAGTTCTTAGTTTTTAG TTCTTACTACTACTCATTTGGTCCCACCAACCACATTATTTATACTTTTTTTTCCATAAAGTAATAAAACAAAA
CDS sequence (LotjaGi1g1v0425100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAAACCCCATCGATGCTGTTGCCACCTACTCATAGATATGCAGCAGGTGCTCTCTTCGCTCTCGCACTTCACCA CTCCCAAATTCACCAATCTCCAACCACCGCTCAGAACGCCGCTTCCGTTTCAGACGACCCCGAGCTTTGGATTCACGACA ATTTCGGTTTGCTTTCGCCTGTTCTTAGGTTCCTTGGAGTGGATGACCAATCCTCGAATGGCCTAAAGGAAACCGCCGGT TCCTCTTCCCAATTCAGGCATCACCTTGGATCTTTCTTGAAATTACTGGCGGAGGAATCTGATGCGAATTCTTCGGAAAG ATTGGATAAAGAAGCTGCATTGACCAAGGCTGTTGATGCAATGACTGAGAGCATGAGCACTGCTAGTATTGCTGAATCGT CGTCTGGGGAATCCGGAGGCCATGAGCAGAAGAGCCAAGATTATTTATGCAATACCACCGCTCCTCCGGTTGTTGAGCCC CATAGTGATAGTAAAACTAAAGACAGTGAGAGTTCAGCTTTGCTGCCTCAACAGAAACAAGCTTCCACTGAACTTGAAAA TGTAACATTGGAGAAACCTCTGGAGGAGGCAAGTCTGATCAGTTACCAGAGGAAAGTGACAGTTCTTTACGCGCTTGTTT CGGCTTGTGTAGCGGATACGGCGGAGGTTGACAATAAGTGCTGTCGATCAAGGCAGGGCTATGATGCTCGTCACCGTGTG TCTTTGCGGTTGATTGCTACATGGCTTGGTGTCAAGTGGAATGAAATGGAAGCAATGGAGTCCATGGTTGCTTTTTCTTT AATGAATTCATTGAGTGAAGCAGGTGCCAAGGAAGATGAATCTATAGGTTCAGAAAACAACTGGGATAAATGGAAGCGTG GAGGCATTATTGGAGCAGCTGCTGTAACTGGAGGAACCTTAATGGCTATAACTGGTGGCCTGGCTGCCCCTGCAATTGCC CACGGATTGGGTGCTTTGGCTCCTACATTTGGCAGTATTGTTCCTTTCATTGGAGCTGGTGGATTTGCTGCAGCAGCAAC TGCTACGGGGTCTGTTGCTGGATCTGTTGCTGTTGCTGCATCATTTGGAGCTGCTGGAGCTGGCCTTACTGGGAGTAAGA TGGCTACAAGAATTGGAAGTCTTGAGGAATTTGAGTTGAAAGAAATTGGAGGCGTTCATCAAGGTCACCTAGCGGTCAGT ATCTCCATTTCTGGGCTTGCATTTGAGGAGAAGGATTTTGTGAAACCTTGGGAAGGTCACTATGATAACTCAGAGAGGTA TGTGCTCCAATATGAGTCTAAAAATTTGATTGCTCTGAGCACTGCCATCCAGGATTGGCTTACTTCAAAAATTGCGGTTG AGTTGATGAAAGGAGGCGCCATGATGACGGTATTAAGCACACTTGTGGCAGCATTAGCATGGCCAGCAACTTTAGTTACT ACATTTGATCTTATAGACAGCAAATGGGCAGTTGCTATAGACAGATCCGACAAGGCTGGTAAGGTGCTTGCGGAGGTGTT GCTGAAAGGCTTGCAAGGAAACAGGCCTGTGACACTAGTAGGTTTCTCGTTGGGAGCCCGTGTTATTTTCAAGTGTCTCC AATTCTTGGCTGACTCTGATGGGGACAATGCTGGACTAGTCGAAAAGGTTGTTTTCCTTGGAGCACCCATCTCAATTAAT GACGAAAATTGGAAGGCCGCTAGAAAGATGGTGGCTGGAAGGTTTGTGAACGCTTACTCGACAAATGACTGGACCCTTGG TATAACTTTCCGAGCCAGTTTACTTTCACAAGGATTAGCTGGAATCCAACCTGTTGATGTTCCCGGGATTGAGAATGTTG ATGTGACACAACTTATAGAAGGCCACTCTTCCTACCTGTGGAAGACACAGAAAATCCTGGAGCAGCTTGAACTGGACAAT TATTTTGCTGTTTTCAGGAGCGAACAAGAAAGGCCCCATGAAGAGAAGAGTATAGTGAACTAG
Protein sequence (LotjaGi1g1v0425100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEETPSMLLPPTHRYAAGALFALALHHSQIHQSPTTAQNAASVSDDPELWIHDNFGLLSPVLRFLGVDDQSSNGLKETAG SSSQFRHHLGSFLKLLAEESDANSSERLDKEAALTKAVDAMTESMSTASIAESSSGESGGHEQKSQDYLCNTTAPPVVEP HSDSKTKDSESSALLPQQKQASTELENVTLEKPLEEASLISYQRKVTVLYALVSACVADTAEVDNKCCRSRQGYDARHRV SLRLIATWLGVKWNEMEAMESMVAFSLMNSLSEAGAKEDESIGSENNWDKWKRGGIIGAAAVTGGTLMAITGGLAAPAIA HGLGALAPTFGSIVPFIGAGGFAAAATATGSVAGSVAVAASFGAAGAGLTGSKMATRIGSLEEFELKEIGGVHQGHLAVS ISISGLAFEEKDFVKPWEGHYDNSERYVLQYESKNLIALSTAIQDWLTSKIAVELMKGGAMMTVLSTLVAALAWPATLVT TFDLIDSKWAVAIDRSDKAGKVLAEVLLKGLQGNRPVTLVGFSLGARVIFKCLQFLADSDGDNAGLVEKVVFLGAPISIN DENWKAARKMVAGRFVNAYSTNDWTLGITFRASLLSQGLAGIQPVDVPGIENVDVTQLIEGHSSYLWKTQKILEQLELDN YFAVFRSEQERPHEEKSIVN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 659 | 659 | 0.0 | ||
| PANTHER | 1 | 659 | 659 | 0.0 | – | |
| MobiDBLite | 125 | 187 | 63 | - | – | |
| MobiDBLite | 125 | 152 | 28 | - | – | |
| MobiDBLite | 169 | 187 | 19 | - | – | |
| Pfam | 290 | 638 | 349 | 1.9E-95 | ||
| TMHMM | 294 | 316 | 23 | - | – | |
| TMHMM | 323 | 345 | 23 | - | – | |
| TMHMM | 349 | 371 | 23 | - | – | |
| Gene3D | 456 | 638 | 183 | 4.4E-6 | ||
| TMHMM | 458 | 480 | 23 | - | – | |
| SUPERFAMILY | 497 | 586 | 90 | 2.64E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0425100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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