Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0427200 |
| Transcript ID | LotjaGi1g1v0427200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; TAIR: AT3G27230.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|O80844|PMTG_ARATH Probable methyltransferase PMT16; TrEMBL-Plants: tr|I1MC57|I1MC57_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0427200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:92131857..92133717) extracted from Lotus japonicus Gifu genome v1.2.
CTGCACCTTTCCCAGTATTCAGCATTGAATATATGGCAGGTAGTGACAACAAGGGAATAAAACCCTTCAAGTGAGTCATG TTTGAAACTCCACTACCACTATCCTCCAAATCTATACATCCTAATCAATCTTGTGTTGCTCTTCTTCTTCTTCTTCTTCT TCTTCTTCTTCTTCTTCTTCACTGATCCCTTATCTCTTTCTGCAAGATGGGTTCTGTTTCTCTCAAGATAGGGGATGGAA CAGCAAGGTTCAAAAGAGCAACTCTGTGTTCTTCAGCAACCAACATTCTCATGATCTTGGCTGTTATCACCACCAATCTC TTCGCTCTTTACTCTTTCACCGCTTCTCCTAAAGTCAACCACACCGAGCTGCTACTTCACCAAGCCCACAAGAATTTCTC CCTCATCTCAGAGCAGGTCACGCTCATACTCAGAGAAATTGACCAGTCTCAGAAGAAGCTTGCCCAGATAGAGAAAGAGC TTCTCGGCTATGACAGCGTCGATCTTTCGAGACCCAATATCGCAATTGAGCTTAAACTCTTCCTCAAACGCCACCAGCTT CCTCTAGGCAAGGATTCCAAAACTGGAATCACTGAAATGGTTTCCTCTGTTGGCCACTCCTGTGAGAAATATATGGAGTT CTTGTCTCAGTACATGGAGTACAAGGCTTTTGGAGCTTGCCCTGATGATTGGAGCATGGCACAGAAGCTGATTTTGAGAG GGTGTGAGCCTCTTCCTAGAAGGAGGTGTTTTTCAAAGACTATTTCTAAGGTAGGGGTTTACCCTTTTCCCTCTTCACTT TGGAAACCTGTTGCTAATAAAACTGTTAATTGGAGTGGTCTTGGGTGTAAGAATTTTGGATGCTTGAAGGGTAAGAAATT AAGCAGAGAATGCATTACTTGCTTTGATTTGGTTAATGGGTATGAGAATCATAGGTTTATCAAGGCTAAGAGTAAGAATG ATTTTCTCATTGATGATGTGTTAGTGTTGGCAATGGGAAGTGGTGGAATTAGAATAGGACTTGACTTGGGAGGTGGGTCT GGATCCTTTGCTGCTACTATGGCTGAAAGGAATGTTACAGTGGTTACTACCACCCTGAACATTGATGCTCCATTCAGTGA GTTCATTGCAGCAAGAGGGCTTTTTCCTCTTTACTTGAGCTTAGATCATAGGTTCCCATTCTATGACAATGTGTTTGATT TGGTTCGTGCTTCAAGTACTTTGGATGTTGGAGGAGAAAAGCCTGAGAAGTTGGAGTTTTTGATGTTTGACATTGATCGT GTTTTACGGGCTGGTGGTTTGTTTTGGCTGGACAATTTCTATTGTGCTGATGAAGAGAAGAAGAAAGCATTGACTCGGTT GATTGAAAGGTTTGGATATAAGAAGTTGAAATGGGTTGTGGGAGAGAAGGTTGATGCTCTTGGATCAGGCAAAACTGAAG TTGTGTTATCTGCTGTTCTTCAGAAACCTGTGAGGGTGTAAAGATGAATCCAATAAAGGGTGAAAGGTGAGAATAATTGT GCTTCTGCTAGCTCTGTTTCACAGACAATCTGTGTGAAATGTGAATGAGTAACTTGTAACATAATCAGAGCCCATTAGAA GTGGAATAAGTGCTTGAATGGTTGTATTTTAAGAGATGTTGTATATCTTATTCAGGCACTAGGTTCTTTTAGTTATCTTG TAGTTGATAAATTGCTAGTAAATGTAAAATGAATTACATTTTTAAAGTTATAAAGTTTACTCAATTTTAAACTAGACGAA GGTCAGTTTCATAAGTGGTTTTGTTGGTTTGGAGAATGTCCTTCACTAATCGGTCCTTGGTTTGAAATCAGCGAAATATC GAGAGAAAAGAAACTAGATAA
CDS sequence (LotjaGi1g1v0427200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTCTGTTTCTCTCAAGATAGGGGATGGAACAGCAAGGTTCAAAAGAGCAACTCTGTGTTCTTCAGCAACCAACAT TCTCATGATCTTGGCTGTTATCACCACCAATCTCTTCGCTCTTTACTCTTTCACCGCTTCTCCTAAAGTCAACCACACCG AGCTGCTACTTCACCAAGCCCACAAGAATTTCTCCCTCATCTCAGAGCAGGTCACGCTCATACTCAGAGAAATTGACCAG TCTCAGAAGAAGCTTGCCCAGATAGAGAAAGAGCTTCTCGGCTATGACAGCGTCGATCTTTCGAGACCCAATATCGCAAT TGAGCTTAAACTCTTCCTCAAACGCCACCAGCTTCCTCTAGGCAAGGATTCCAAAACTGGAATCACTGAAATGGTTTCCT CTGTTGGCCACTCCTGTGAGAAATATATGGAGTTCTTGTCTCAGTACATGGAGTACAAGGCTTTTGGAGCTTGCCCTGAT GATTGGAGCATGGCACAGAAGCTGATTTTGAGAGGGTGTGAGCCTCTTCCTAGAAGGAGGTGTTTTTCAAAGACTATTTC TAAGGTAGGGGTTTACCCTTTTCCCTCTTCACTTTGGAAACCTGTTGCTAATAAAACTGTTAATTGGAGTGGTCTTGGGT GTAAGAATTTTGGATGCTTGAAGGGTAAGAAATTAAGCAGAGAATGCATTACTTGCTTTGATTTGGTTAATGGGTATGAG AATCATAGGTTTATCAAGGCTAAGAGTAAGAATGATTTTCTCATTGATGATGTGTTAGTGTTGGCAATGGGAAGTGGTGG AATTAGAATAGGACTTGACTTGGGAGGTGGGTCTGGATCCTTTGCTGCTACTATGGCTGAAAGGAATGTTACAGTGGTTA CTACCACCCTGAACATTGATGCTCCATTCAGTGAGTTCATTGCAGCAAGAGGGCTTTTTCCTCTTTACTTGAGCTTAGAT CATAGGTTCCCATTCTATGACAATGTGTTTGATTTGGTTCGTGCTTCAAGTACTTTGGATGTTGGAGGAGAAAAGCCTGA GAAGTTGGAGTTTTTGATGTTTGACATTGATCGTGTTTTACGGGCTGGTGGTTTGTTTTGGCTGGACAATTTCTATTGTG CTGATGAAGAGAAGAAGAAAGCATTGACTCGGTTGATTGAAAGGTTTGGATATAAGAAGTTGAAATGGGTTGTGGGAGAG AAGGTTGATGCTCTTGGATCAGGCAAAACTGAAGTTGTGTTATCTGCTGTTCTTCAGAAACCTGTGAGGGTGTAA
Protein sequence (LotjaGi1g1v0427200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSVSLKIGDGTARFKRATLCSSATNILMILAVITTNLFALYSFTASPKVNHTELLLHQAHKNFSLISEQVTLILREIDQ SQKKLAQIEKELLGYDSVDLSRPNIAIELKLFLKRHQLPLGKDSKTGITEMVSSVGHSCEKYMEFLSQYMEYKAFGACPD DWSMAQKLILRGCEPLPRRRCFSKTISKVGVYPFPSSLWKPVANKTVNWSGLGCKNFGCLKGKKLSRECITCFDLVNGYE NHRFIKAKSKNDFLIDDVLVLAMGSGGIRIGLDLGGGSGSFAATMAERNVTVVTTTLNIDAPFSEFIAARGLFPLYLSLD HRFPFYDNVFDLVRASSTLDVGGEKPEKLEFLMFDIDRVLRAGGLFWLDNFYCADEEKKKALTRLIERFGYKKLKWVVGE KVDALGSGKTEVVLSAVLQKPVRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 423 | 423 | 2.2E-238 | – | |
| PANTHER | 1 | 423 | 423 | 2.2E-238 | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 24 | 44 | 21 | - | – | |
| Phobius | 45 | 424 | 380 | - | – | |
| Coils | 71 | 91 | 21 | - | – | |
| Gene3D | 245 | 409 | 165 | 6.4E-9 | – | |
| Pfam | 259 | 393 | 135 | 1.5E-7 | ||
| SUPERFAMILY | 272 | 386 | 115 | 7.47E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi1g1v0427200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…