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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0427700 |
| Transcript ID | LotjaGi1g1v0427700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb/SANT-like DNA-binding domain protein; TAIR: AT5G27260.1 Myb/SANT-like DNA-binding domain protein; Swiss-Prot: sp|Q9FFJ8|LIMYB_ARATH L10-interacting MYB domain-containing protein; TrEMBL-Plants: tr|A0A0B2SDB7|A0A0B2SDB7_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0427700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:92210296..92213076) extracted from Lotus japonicus Gifu genome v1.2.
ACAGGTTTAGTAAAGGATAATATATGGTCCACTGTAGAGGAGCAAGTGGCAAAATTTTTACACATTATAGGACATAATGT TAAAAATCGTGTGGTTTCGTTCTTCTTCCATCGTTCCGGAGAGACAGTTAGCCGTCATTTTCATAATGTGTTGCATTCCA TAATCTCATTACAAGAAGAATTTTTTATCCAACCATCAGGTGCGGATGTCTCGGCACAAATTCTTCACAATGACAGATTC TATCCATTTTTAAAGGTATGAGGGTGGTTTTTTTACTTGTGGTTATCTTACCATTTTTAATGATTATATACAAAACTAAC ATTACTATTTATGACCAAAGGATTGCATTGGAGCTATAGATGGGACACATGTTCGGGTCAAGGTTCCAAGGGCAGAAGCC CCTCGCTTTCGTGGAAGAAAGGATTGCCCCACGCAAAATGTCTTCGATGCATGTGATTTCGACATGAAATTCACATACGT TCTAGCAGGGTGGGAAGGAACAGCTTCAGACTCTAGAATTTTAAAGGATGCCTTGAGTAGGGAAGACCCTTTAATAATAC CAGAAGGTTAGTAAAAACCTTTCAATTTGTAAAAACCATTCAATTTTCAATTTTTTTACTCGATCTAATGTGTTGTAATT TATCTCAACCTTTATGTAGGAAAATTTTATCTTGGGGATGCGGGATTTATGCTTAAACCTGGGATACTTACACCATATAG AGGTGTTCGTTATCACTTGAAGGAGTATTCAACTCGAGGCCCCCAAAATCCTAGAGAGTTGTTCAACCTACGCCACTCTT CACTCAGAAATGTCATAGAGAGAACTTTTGGTGTATTAAAAAAAAGATTTCCCATCATATCCAGCGGAACAGAACCACAT TATTCGTTTGAAGTAATGAGGAACATAGTAGTTGCTTGCTGTATACTGCATAATTTTTTAATGGGTGTGGACATTGATGA AGCCTTAATGGCTGAAGTTGACCGTGAATTGCTTCAACGTGACATAGATAGATCCCAGGCTCAACGTGATGAGGAGTACA GACAAGGCCAACTTCTAAGGGATAATATTGCAAATGAAATGTGGAATGTTTATCAAGTTTAGTGTTGTTGTCTCATGGTT CCTAGGTCTTCATCTTGTAATTTATACTTGGATTATGTGCATGTAAACTTTGATGTTGTTATTCATGTTTTCCATATGTC ATTAGTGTTGGGTTATTCTTTCTACTTGTTATTTATTGATCTGTGAAGTATTGAATTGATTTGGGTAATGTCAAAGACTA TTCTTCTCATATGTATTTGTCATTGATTCCTAAAATACAATGGTCAGCATTCTCTATCCTTCAATCTATTTACCACAATT GTATTTATAGGTTGAAAGATGTCAAAGAGTAAAGGTCAAGCTGGGGAACCTACTCAAGTCCGTGCAGTGATCTTGAGGTG GACTGAAGACATGGACCAAATATTACTGGATGCCTTTTGTGAGGAGGTTACCAAGGGAAATAGGCCGGATGGTGCATGGA CAACGCAAGGCTATGCTAATGTACTTGAGGCATTAAGGGCTGGCGTTTCACCAACCATGACAAAGCAAAATATTAAAAAT AGAATGAAAACCATGAAGGATAACTTCACTGAGGCTTATGATCTATTCAAAGGTCTTAGTGGCTTTGCATGGAGTCCAAT GACTAAGAGGTTTGAGGCTGAGGATCATGTATGGGAGGAATTAATTAAGGTGAGTTGCATTATTCATGACATGTGATGCT GATCATTATGTTATTTATTTACACAACATAATACTAACTAATGTTGTCATTTAATTTGTGAAAGGAAAAACCTCATGCTA TTAAATGGAAACGATCGCAAGTCAAGCACTATGATACATTGAAGGAGCTTTTTGGTGCTGATCGAGCAACGGGAAAAAAA GCCTTAAGTGCTGGCCAAATATTGCGTGAAATGGAGAAGGAAACTGTGGACTTAAATGATGTTGGCGATGACACTTCTAT GCCGGAACCAAATGCTGGTGTATTTGAGGGGGAGCAATTCTCCCCTCCTAATGTTGACTCTTTTAGCCCAGCCCAAGCAC CCTCCCATCAATCTACAGGTACATCTGGTTCACGAGGAACAAAGCGTAAGACACCGATGATTGATTCCTTTGATTCTCAA GTGGAGAAAATGACCAGTGCTCTTGGATTGATGTCTGATGCATTGATTAGTGGTAATTGTATTTCTAGTAAGCTGCATGA TGTGGCTGAAAGGCAGGTGGGAGTCGCAGAACGTCAAGTTGTAGCAATTGAAGAGCGCAATGAAATTTACAAAGACCAGT TGACCGTCTTTAAACATAGTAAACCACGTATATATACTGAATCAGATGTGTGGAACATGTTGACTGAACTGAATGTAATT GATCACCTCCGCATGCAGTGCTATGAATTTTTATGCACTAATGATCAAAAGAAGCGCCTGCTTTTTGGTGTACCAGCTCA CATGCGCCTGCAGACTCTGTTTCAAATGATGAATGTCGGTGGGCTGCAGTGACAGTTCATGTTCAGCCTATGTTTTTTTG CTAGTGTGCATTATGTACTTTTTGGGGTGTTTGTACTGAAGACATCTTCTAGTGCCTTTAGCTATTTTGTGTTACTAATT TGTAATCTATTATGGAAAGAAGTAGGAAGCTAGGGAAGGGTTTTTTGATGTAAAAGGATCTATTTTTTTGTTATGGTGGC AGTCATATGCTTTGTAAGCCTTTTGAATGTAATTGACTCAAACATTATGTATGGATTATAG
CDS sequence (LotjaGi1g1v0427700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAAAGAGTAAAGGTCAAGCTGGGGAACCTACTCAAGTCCGTGCAGTGATCTTGAGGTGGACTGAAGACATGGACCA AATATTACTGGATGCCTTTTGTGAGGAGGTTACCAAGGGAAATAGGCCGGATGGTGCATGGACAACGCAAGGCTATGCTA ATGTACTTGAGGCATTAAGGGCTGGCGTTTCACCAACCATGACAAAGCAAAATATTAAAAATAGAATGAAAACCATGAAG GATAACTTCACTGAGGCTTATGATCTATTCAAAGGTCTTAGTGGCTTTGCATGGAGTCCAATGACTAAGAGGTTTGAGGC TGAGGATCATGTATGGGAGGAATTAATTAAGGAAAAACCTCATGCTATTAAATGGAAACGATCGCAAGTCAAGCACTATG ATACATTGAAGGAGCTTTTTGGTGCTGATCGAGCAACGGGAAAAAAAGCCTTAAGTGCTGGCCAAATATTGCGTGAAATG GAGAAGGAAACTGTGGACTTAAATGATGTTGGCGATGACACTTCTATGCCGGAACCAAATGCTGGTGTATTTGAGGGGGA GCAATTCTCCCCTCCTAATGTTGACTCTTTTAGCCCAGCCCAAGCACCCTCCCATCAATCTACAGGTACATCTGGTTCAC GAGGAACAAAGCGTAAGACACCGATGATTGATTCCTTTGATTCTCAAGTGGAGAAAATGACCAGTGCTCTTGGATTGATG TCTGATGCATTGATTAGTGGTAATTGTATTTCTAGTAAGCTGCATGATGTGGCTGAAAGGCAGGTGGGAGTCGCAGAACG TCAAGTTGTAGCAATTGAAGAGCGCAATGAAATTTACAAAGACCAGTTGACCGTCTTTAAACATAGTAAACCACGTATAT ATACTGAATCAGATGTGTGGAACATGTTGACTGAACTGAATGTAATTGATCACCTCCGCATGCAGTGCTATGAATTTTTA TGCACTAATGATCAAAAGAAGCGCCTGCTTTTTGGTGTACCAGCTCACATGCGCCTGCAGACTCTGTTTCAAATGATGAA TGTCGGTGGGCTGCAGTGA
Protein sequence (LotjaGi1g1v0427700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKSKGQAGEPTQVRAVILRWTEDMDQILLDAFCEEVTKGNRPDGAWTTQGYANVLEALRAGVSPTMTKQNIKNRMKTMK DNFTEAYDLFKGLSGFAWSPMTKRFEAEDHVWEELIKEKPHAIKWKRSQVKHYDTLKELFGADRATGKKALSAGQILREM EKETVDLNDVGDDTSMPEPNAGVFEGEQFSPPNVDSFSPAQAPSHQSTGTSGSRGTKRKTPMIDSFDSQVEKMTSALGLM SDALISGNCISSKLHDVAERQVGVAERQVVAIEERNEIYKDQLTVFKHSKPRIYTESDVWNMLTELNVIDHLRMQCYEFL CTNDQKKRLLFGVPAHMRLQTLFQMMNVGGLQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 347 | 335 | 7.9E-76 | – | |
| PANTHER | 13 | 347 | 335 | 7.9E-76 | – | |
| Pfam | 20 | 114 | 95 | 1.0E-19 | ||
| MobiDBLite | 168 | 221 | 54 | - | – | |
| MobiDBLite | 191 | 218 | 28 | - | – | |
| Coils | 255 | 275 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0427700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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