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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0428100 |
| Transcript ID | LotjaGi1g1v0428100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb/SANT-like DNA-binding domain protein; TAIR: AT5G05800.1 Myb/SANT-like DNA-binding domain protein; Swiss-Prot: sp|Q9FFJ8|LIMYB_ARATH L10-interacting MYB domain-containing protein; TrEMBL-Plants: tr|I3RZ61|I3RZ61_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0428100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:92268000..92270651) extracted from Lotus japonicus Gifu genome v1.2.
TGAGGGATATATCTTTTTCACTACCAAACCCAGTGAAGAAAGAGGGAGGCAGAGCAGAATCGTGAGATTGTGAAGGGAAA TGATCGAAAGAGCGCGCACTGTATCATGTAATGTATCGATCCCCTTTTCTCTCTTCTTCAGCTTTCACTTGCTTGCATTG CATTGCTGCATTCACGCTTGTTAATTCAATCACATGTGATTGTTTCCCTTTTTTTTTTCTTCTTGTTGTCAGAAACCATG ATTACTACCCTAAATAATGTTTGAATATGAAATCGGTAGAGTAGAATTGATTATTGAATTCAAGTTTCGATCCTGTTGAA ACTGACTCCATATTTTGGGGCCTCATGATGTGTTATGCCCTTTATGATTTGGTGTTGCTGAGCAATTTTTGCTAGGGTTA TGTGGTGTATGTCTGTTATTTTTTTTTTTTTTTTTTTTGGAGAATGCTGTTGAGTGAAGTTTTGTTTTATGAGAGCATTT TTTCAACAGTTGATGGAAATCGAATCTAGTAATCAGCCCAAGCAAGAGCGTTCGAGGACAAGATGGACAGCATCACTTGA CAAGATATTTGCAGACTTGGTTGTCAAGCACATCCAACTAGGAAACAGACCAAACGATGTTTTTGACAAGAAAACATGGA ATCACATTCGTGACGACTTCAATAAGCAAACCGACCTCAATTTCAATAACAATCAATTGAGGAAGCATCTAGACGTTCTC CGAACACGCTTCCATAATCTGAAATCTGCTTATGATCAAAATAACGGCTTTGTAATAGATGATTCCTGTTGCATTGGCTT TGAACTGTGGGAAGACACAGGGGTAAAAGTATTTTATTTATAGAAGCAATGTTTTCCTTTTGCTCTATTCAGTATTCATA TTATTAACTTTGATAGGTTTTGTATACAGGCACAACCTAGACCTGAAATAGTTAAAGTGAAAGATTGTCCCATATATGAG CAGCTGTGCACAATATTCTCAGATTCAGCTGCAGTGCCAGATGGGAAATATGCCCAATCTAGTCATTATGAAGTGGATGC CACTAGCTTAATTTCATGTTCAGAAGCTGGGGTCTCAAATCATCAATACCCATCATCATCAAAACCCATCTTAACTGCAG AGAATGTAACTAAGAATTCTCTTGATAGGAAAAAGAAACGTCCATCTGAGATGCAAACAACTAGTCTCGATCAAGACAGC TGTGATGCTATGGCAGAGGCCTTGTTAGAGATGGTTGGTGCTTATAGGTTAAGGACAATTGTTTCAACTGTAGGTGATGA TAAATTTTCCGTAACCAATTGCATTAGGGCACTTGATGAGGTAGATGGCATCAACGAACAGCTCTACTTTTCTGCATTGG AGCTCTTTGAGGATCCTAGTTTAAGAGAGATATTCATTTCTTTAAAATGTGACAAGATACGACTGGCTTGGTTACAAGGT AAGTGTGGTAGGAGGAACATTCCTTAGATGTAGGCCCTTTTTAGCTCAGTTGTATTTACTAAGCCTAATGACGTTTATTT ATGATAATCTCTTTGGCTAGATGTAGTCCTTTTTAAATTGCCGCTGTTTTTTTTGTTTTTAAGTGCTATCTCATGTGGAC ATTGTGCCGATAGCTTTTTCTCTGGAAGCGGTTTGCAAATAATTCATAAACTTTTATCTTTTGTTACCATTCATTAATTA TAAACAAGTTGATCAAATTTCATCTTTTGTTAGCATTCATTGGGGTAGATATGTAGACTTAGACCAACATGAATTGACAA CAGGCTTCCATAGGGTTTTGTAAGAGTAGGGCAGTAGAGAGTTTACATCAGATTTTATCAGGCTTAATTGTGGGATTTTC AATTGAAGAACTGTCGATTCAAACATGGCCTTTGTATTTGTTAGCTGATTTAACACCCCACCACAACAATTCCCACCCCA TTTAAAGTAGTGATTTCCTAAGGGAGGTTCTTATTGTTATGTTGTCCTTATTTATGTGGTGAAGGTGGAAGCTTCTTTTT TTTGGTTACAGTGGAAGCTTCGTGGTTATGGAAAATGTGCTGGTGAAGAAGGGATAGCAAAAGAAAGAATGAAAGAAGGA GGTTGAGAGAGAAGAGAGGATTTGTATTGTTGTTTGAAGTGTGAAATCTAGAGAAAATGAGAGGACTGGTGGTGTGAGTG TAAGAGAGTGAGTAATTTCTTTTTGCGACCTCAGAAATAAGGTGTTGAGGACAGTGCTGCACTCTGGTCCTGGTTCCCTA ATCTCTAGGTTGGTGATAATCAAAACTACATGCTTGATAGCTAGCTTAATAATCAAAACATACGTACTAAGAGCACAACA AAGCATGTCAAAATTAGTCAGAAATCTTCAAGAACATCAATGAAAAGCCCAGAAATAATCAACAATTAAGTCTGGGCTTT CAAAAGAGTAGAAGCTCTTCAAGATAACCAAGAAATTTTGATAGACTTGCTGAAGAGTGTTATACTGACGAAACAGGTGA ATGTATTTTCACTATTTTGTACTTGTTAGCTGCTGGGCTACTTCATTGACCAACCGAGATGGGACATAATTTTAGGAAAC ATGGTCACTAAAAATAACCAGACACTTTCCAACGATACCACCTCGTATAAATGCCACCGTAACCCACCCAATTTGGTGCG CCATATCATTTG
CDS sequence (LotjaGi1g1v0428100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATCGAATCTAGTAATCAGCCCAAGCAAGAGCGTTCGAGGACAAGATGGACAGCATCACTTGACAAGATATTTGC AGACTTGGTTGTCAAGCACATCCAACTAGGAAACAGACCAAACGATGTTTTTGACAAGAAAACATGGAATCACATTCGTG ACGACTTCAATAAGCAAACCGACCTCAATTTCAATAACAATCAATTGAGGAAGCATCTAGACGTTCTCCGAACACGCTTC CATAATCTGAAATCTGCTTATGATCAAAATAACGGCTTTGTAATAGATGATTCCTGTTGCATTGGCTTTGAACTGTGGGA AGACACAGGGGCACAACCTAGACCTGAAATAGTTAAAGTGAAAGATTGTCCCATATATGAGCAGCTGTGCACAATATTCT CAGATTCAGCTGCAGTGCCAGATGGGAAATATGCCCAATCTAGTCATTATGAAGTGGATGCCACTAGCTTAATTTCATGT TCAGAAGCTGGGGTCTCAAATCATCAATACCCATCATCATCAAAACCCATCTTAACTGCAGAGAATGTAACTAAGAATTC TCTTGATAGGAAAAAGAAACGTCCATCTGAGATGCAAACAACTAGTCTCGATCAAGACAGCTGTGATGCTATGGCAGAGG CCTTGTTAGAGATGGTTGGTGCTTATAGGTTAAGGACAATTGTTTCAACTGTAGGTGATGATAAATTTTCCGTAACCAAT TGCATTAGGGCACTTGATGAGGTAGATGGCATCAACGAACAGCTCTACTTTTCTGCATTGGAGCTCTTTGAGGATCCTAG TTTAAGAGAGATATTCATTTCTTTAAAATGTGACAAGATACGACTGGCTTGGTTACAAGGTAAGTGTGGTAGGAGGAACA TTCCTTAG
Protein sequence (LotjaGi1g1v0428100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIESSNQPKQERSRTRWTASLDKIFADLVVKHIQLGNRPNDVFDKKTWNHIRDDFNKQTDLNFNNNQLRKHLDVLRTRF HNLKSAYDQNNGFVIDDSCCIGFELWEDTGAQPRPEIVKVKDCPIYEQLCTIFSDSAAVPDGKYAQSSHYEVDATSLISC SEAGVSNHQYPSSSKPILTAENVTKNSLDRKKKRPSEMQTTSLDQDSCDAMAEALLEMVGAYRLRTIVSTVGDDKFSVTN CIRALDEVDGINEQLYFSALELFEDPSLREIFISLKCDKIRLAWLQGKCGRRNIP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 293 | 293 | 9.6E-153 | – | |
| PANTHER | 1 | 293 | 293 | 9.6E-153 | – | |
| Pfam | 17 | 94 | 78 | 4.5E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0428100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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