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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0431100 |
| Transcript ID | LotjaGi1g1v0431100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor; TAIR: AT4G35900.1 Basic-leucine zipper (bZIP) transcription factor family protein; Swiss-Prot: sp|Q84JK2|FD_ARATH Protein FD; TrEMBL-Plants: tr|I3SF30|I3SF30_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0431100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:92605863..92608616) extracted from Lotus japonicus Gifu genome v1.2.
GTGCAATTAAGTCAATTTAAATTGATACTTGTGGAGATACCTTTCTTGAAATCCATTGGATTACAAGCGCCCCACCTGTG TAGAGGATCTAAATCTAGATATATAATGGCTAAAGATATTTTGCTAAAGAAAGAGACTGACAGAATTGACGCGTGAGTGG GTGACAGATATCAATATCAGTATAGTGTGCAAAGTAAAACAGTGTTTCCAAAAATGTCTTGGTGGTCTCGCTTAAAAAAG AAAACAAATGCATTAAATTTTGTCCACACCAAATGTGGCATACTAGGGTTATTACCAAACAGAGTAAACAAGACAAAACA AAGCTAAAGCCAACTAGGAGAGTCAGTGGAGTGTGTGTTGCTTCAGAGAAAAACAGAGAGACTGAAACAGGGTGAGTGAT GGACCCTTCACCATGTAATTGCTGGAACCATTTCACCAAACCACCCTCCCCAACTCCTTCTTCTTCTTCAGAAGTATGGA AGGATCTGAAACTTTCCTCTCTCTGTGATTCCTCTATGGAGATGGAAGCTTCTTCCCCTTGGCACAGCCTTTGTCCTGCT AGCTCTGTTTTTCAGAAACAGAGCCATCAGCATCACTCGATGCTTTCTTCCTTCAACACTTCGTTTGATGCTTCTTCCTC CAGTGGGGAGAAAATCGCTCAGCAGGATCGTGTCTATGCCTTTTCTGATCAGCGACGCAAGCGCATCCTCAAGAATCGAG AATCTGCTCTTAGATCCAGAGCGAGAAAGCAGGTAAGTACTCTCTTCCCTCACTCTCTGCACCTTCTTGGTGCTTTAAAG TTAAAACTTTATTTCATTTAACTCATAGAGAACAATTTGTGCAGGCTTACAAAAAGGGGTTGGAAATGAAACTTGCCCTT TTAACGGAAGAGAACTCTAGACTCAAAAGTCATGTAGCAGAGGTCAGCCACTATTTCTATTTGGTTTTTTCATTTTTTGT GTGCTATTCATTTGGGATTTTGGGTAAAGGAAAAGTTCTACAGACTCTGCCCAAAAGAAGAAAGGAAAATGTCAACAGAG GAAGTACAGACTTTAATTTATCCTTTTTTGATTGTGGTACTATTCCAATGTTAATGTGAACTAAACATGAATTAACTAAA GAAAAAACCCCTTAATACGTTTTCATTACTTAGAGTGAAAGAAAAAAAGCAATACTTTTAGTTAGAGGCTTTGATGCATC CCCAATTTTGGTCACTTTTTTGTTCTTACAGCTGCAGTTCCGCTTGTCCTCTGCTAAGCCTGCCAAAGGGGGTGCGGTTT ATAGAACCATGTCATCTCCGTTTTGAGGAGTATGGAAGCAGCACTTTCAAGTTTCAACCCTTTTCTTGTATGCTTTTAAG TTCTAAACTTTCTTAGATAAGAAACAGAGAAGTGTAAGGGGTGCTAAAAACCCAGTTTTGGTATATATGTATGATCTTAA TCAAGTGTGTATCTTGCTGGTGATGTAGATATCTTTGTAAGCAGATTGTTGTTTGACCAGTAGTAGCGTTGTGCCTGAAC ACCTACTCTTTTTTTTAGCTGCTGTAAATTGGAAGGAATTTGTCTAGTATTGGTATATAACATATATGTCTAAACCTTTG CCTTATGGCATGTTGTATGAGTCATATCAAATGGCTTTTGATTCTTTAGAATAATTATATTTTCACACCTAAAAAATAGG TGTCAAGAGGTGGAAGAAAGAGAGATAAGAAGAAATGAGATAAAGAAATAAAGATGTGCTAGATGATTAGATAGAAAATG AAGGTGGAATAAGAGTGGAGGAGTGGATGAATCAAACTCGTATAATTTTTTTTTTTTTTTTGCATTTTCCATTTGGGTGT AAGGGGATTTAATGCTCTGTTTGGATGTATGGATGAAAATGGAAGGAAAGAATATAAGAGAAATGAATATAAAGAGAAAA TAAAATGATTTTGAAGTTGTTTGAATTGAATTGAAGTGAAGTAGTAGTCAAAATAACAAAATAATGCAAGAGTTTTTTTT TAAGCAACAAGGGTACTGTTGTCTTTGACATGTAGGTGAACTAGTCTTTCATAGAAAACGAGGCAATTTCATCATCCTTC CTTGTTTTCCTTGCAGATGCGGATGGAAAACTGAAATGGTACTGTACTCCCCCCAATTTCCTTGCCCACCCATTTTCCAC TCTTATCCAAACACACATACAAAAGTTGTTTTCCATTCATATTTGAATATCATTCACTCTTGTTTTAAATAATGAAAAGC GTCTAACTAATCTAGTTCTATGAAATTGTTGTAGGTAGGAGATGTAAAATAAGACAAGTTATAAAACGGTTCCATCTAGA AACCTATTTTGGTTTTTAGGTGGGTGGGTGGGTACATTTTGATGGCCGGGTTTATCCGGGTAAAGAGAATCAATTAGAAA TGAGTGTAATATGATATCAAGTTGTGTTTTGCCCAAGTTAATTTGTTTACATCCAATTTCCAAATTAGGCTAATGATGTT TTTCTTCATTGTAGATGATGATCTTCAACCTTATGAAGGGTTACGATTATCTCACTACAAGAAAAATCGCTCTAACTAAT TGCTTTTTGACCATCGGTAATTGTCATGCATTTGATTGTTGATATTTACTTGGTCAGGAAAAAAAAATTACGGATGTTTC TTTATAATATCGTTTGTATATAGGTCACTGACGTACTTAATTGTAGTCCATCAGTAACGTAAAGACAACACAAAGATCAA TATTAATCATGTATTATGTACAACCTATACAATC
CDS sequence (LotjaGi1g1v0431100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCCTTCACCATGTAATTGCTGGAACCATTTCACCAAACCACCCTCCCCAACTCCTTCTTCTTCTTCAGAAGTATG GAAGGATCTGAAACTTTCCTCTCTCTGTGATTCCTCTATGGAGATGGAAGCTTCTTCCCCTTGGCACAGCCTTTGTCCTG CTAGCTCTGTTTTTCAGAAACAGAGCCATCAGCATCACTCGATGCTTTCTTCCTTCAACACTTCGTTTGATGCTTCTTCC TCCAGTGGGGAGAAAATCGCTCAGCAGGATCGTGTCTATGCCTTTTCTGATCAGCGACGCAAGCGCATCCTCAAGAATCG AGAATCTGCTCTTAGATCCAGAGCGAGAAAGCAGGCTTACAAAAAGGGGTTGGAAATGAAACTTGCCCTTTTAACGGAAG AGAACTCTAGACTCAAAAGTCATGTAGCAGAGCTGCAGTTCCGCTTGTCCTCTGCTAAGCCTGCCAAAGGGGGTGCGGTT TATAGAACCATGTCATCTCCGTTTTGA
Protein sequence (LotjaGi1g1v0431100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPSPCNCWNHFTKPPSPTPSSSSEVWKDLKLSSLCDSSMEMEASSPWHSLCPASSVFQKQSHQHHSMLSSFNTSFDASS SSGEKIAQQDRVYAFSDQRRKRILKNRESALRSRARKQAYKKGLEMKLALLTEENSRLKSHVAELQFRLSSAKPAKGGAV YRTMSSPF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 25 | 25 | - | – | |
| MobiDBLite | 10 | 25 | 16 | - | – | |
| PANTHER | 24 | 163 | 140 | 4.1E-21 | – | |
| PANTHER | 24 | 163 | 140 | 4.1E-21 | ||
| SMART | 94 | 158 | 65 | 1.5E-11 | ||
| ProSiteProfiles | 96 | 153 | 58 | 10.864 | ||
| Pfam | 97 | 146 | 50 | 6.3E-12 | ||
| Gene3D | 98 | 150 | 53 | 1.9E-12 | – | |
| CDD | 98 | 151 | 54 | 1.77303E-16 | – | |
| SUPERFAMILY | 98 | 146 | 49 | 1.94E-10 | – | |
| Coils | 121 | 141 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0431100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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