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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0431300 |
| Transcript ID | LotjaGi1g1v0431300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycine cleavage system H protein; TAIR: AT1G75980.1 Single hybrid motif superfamily protein; Swiss-Prot: sp|Q80ZQ9|F206A_MOUSE Protein Simiate; TrEMBL-Plants: tr|V7AR19|V7AR19_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0431300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:92628514..92632677) extracted from Lotus japonicus Gifu genome v1.2.
TGAGAATCTAGCAAGTAACTGCGAGTATAACCTACTTGTAGCAAGTTCTAAAGTGTCAAGTGTGATTGTTGTACTTTTAT TTTTTCATTTTAACTTAAAATAAAAAATAAGATGTCGTCGACCATAAACACGGACCAGATCATCGTCGACGAATCCAAAT GTTCAGAAATCGAACGACCGCAACAGAGAAACGAGGAAGATGAAGAAGCAGAGTTACAGAAGCTTCTACTCCCCAACGTG GATGAACTTCCCCTCACTCCTCCTTCCGCCGTTGAAACCAACTTTGTCTCTTACTTCGCTCTCGGTAACTCCTCCAATTG AAACCTTTACATTGTTTTTTTTTCATAAACCCTAAACCTCCTCAATTTCAATTCAGTTAATTAATAAATTATTGAAGTGA AACTCGATGATGTTTCTTCATTGGTCTGTTATTTTGATTTCCAGATTTTACGAAGCCAGGTCATGATCATTACATTTACC GGCACGCCAATGGGTATGCTATAATTTAATTGTTTGTTGCAGAGTTGCACTTATCATTCTTATGATGTTGAGGCTCTGCT ACTTAAAGTTAATCATATAATGTAATGTAACTGCTACATATTATGTTGAAAATTTCCAGTTCTTGAGTTTAGTTTTGTAA CTTTTAGCATTTTCCTTTTTAGTGTTATTTATTTTTCTGTATCTGTTGTTATGATCTTGTAGGTTGTGCGTGATCGGGTT GGCGCCTTCCCATATTGCTTTCAAGGATGAAGGTGGAATCACAGCTGTAGATTTCAATGTTGGAAAGTCTGATCGTAGCG GGATGAAGGTCACTGGAAAGCGGAAGAAGGTACTTTATCTCAAAGTGAATGCTGAATTGTAACCCAGCCCCAAATGAACA TATGTCATGTTTAGGTTGAATTGTATCCATACATGCATAAGTATATAGTATATACACAACCAAAAGGATAGCCAGGCCGG TGTTGCGTCACCATAAGACTTTTATATGCGTGTGAAGATTGAAGAATGAAAAACGCCAGTTCCTAATATGCTTACATTTT ACTTTACTACTTTTATTGTTGTGAAATAGACCTACTGCTGAATGATGTTGTATAATATATGACTATCTTTGTGAATGGAT TTAGTTCAAAACTTCCATCTTCACGAAAATGCAGAGTCTGTCCTTATCTATTGCAAGGTTTATCTTTATTTTTGTTTGTG ATTGGGTAATAAACCATTGAGGCAAGCTTCGATGCTTCATGACTCACAATAGTATTGTTTGCTGAAATTTTGTGAGTTCA AAATATTTATTTTTTAAATAGTTTTTTCTGTTGTTCTGTGTAATTAATACAGGATGTATCTTTATGCAGAATGCACAACA CCTTGAGTCCAACTCGGCTTTGTGTAAAATTTCTACAAAAAATTATTCTTATATCGTGAGGTATGTTCTCTATTATATTA CACTCATGCAATCTTCGGTTTATTTTGTATGTTTTCTTGTGTATTTGTATGCTTTAATAATCACGAACTCCTTGTTTCTG TATAACCTCTAAATTTTTTGATAGCTTAACTTGTGGTGACTATTTATAGGTGTTGTGTGAAAGGTTCCCTTTTGGAAGTG AATCAACAGTTAATCAAGCAGCCAGAATTGCTTAATGTTTTGGTAAGCATAACCAAAGTCTCATCCAGTCTGATGTTTTT GTGCTGGGATAACATAGATAGACCTTCCTTGTGACTGGAGTGATAGTTCTAATATTACAATGAAGAATTAGAAACATGCG TGTCTTTTCCATCCTAAATTTTACAATAACACCCTAATATGTTTGAGTTGCGTCTTAATCAAGTCTGTCCCAATAATCTT GTTACCTTTTCTAATTTAATCCGTCAATGAACTTGTAGCACTTACTTAAATAGGGATTTATTTATTTATTTGCAATTGAA GATTCAGCATAAACTATAAATAACATTGTTTAGCAATAAAACTGAACATTTTTTCTATCTGTTTTTCTTATTCTCCTTAT CAATTTTTGTTTGTCAACATTTAGGCTGACAGAGAAGGATACATTGCTATTGTCATGCCAAAACCAGCTGATTGGCTCAA GGTCAAGGATTCCCTTGTCAGCATTCAGGAGTACAAGAAAGCGAGGGGAACCAATTGATCTAAAGCATTTGGTGCCCTGT GATTGCCCCTTGAAAGAGACTCTGTAAGAAGCACTGTGCCATATTGAAGTAATTGCTTGATTTTCCCTTGTGATGCTTCA TTTAGTCGGGTGCCAAATGCTAAAAACTGAATGAAATTGAGAGAGCTTTAGGTGAAGATGCTGAGAAACCTCTTACCCCG TGATATTGGTACATGCCAAGTGGAAGGGTCATATTAGATTAATATCTCAAATTCATGAGCTACTAAGAAGCTCATGATAT TGGGGCTACTAGAGGACCGTTCTTGGGGTTTTTGTTTTCTTGTTTTTTATTGTATTGTATTATTTTATTATATTTATTTT TCTAAAGTCTTTTGAACAATATTAGTTAATAATATAATGGACTTGTGGCCACTTCCTGATTTGAGTTACAAGAGTATCAT AGCTTTCTTAGGAATAAAAGAAGTAATTTAGGGTGGAAAGTTTAAGGGGGATATGAGTTTCAGGTACACTTAGTCACTGA AACCTTCCTCTCTTAAGTAAAAGCTTCTTATTGAACTTAACTCATGTGCCGCTAAAACTTTTTTCTCAAGGAAGAAAGGA AAAGTGTGGTGTCAAATTCTATTTTAATGTTGCTCCTCTGTAATAGCTTCCATAACTAGTCTTCTAGATCTGTTTATGGT GAGAAAACACAAATAGACATGCTCTTCAAGCTCTTCCAACATATCCACAAAGCTAGATTCGTGGTCATGAAATTCCCTCA CAACATGCTCTAGTATTTCACCCCTGCAACTGGTGCCATTCTTCACACAGATATCAGCAACCTCTCTCCAATGTTCTACC TCATCGTCTAACCTCTTAACCACACGGCTCATAGTATCCAAATCATTGATCAGTATAAAAACCCCTTTAGCAGCAACATC AAGTTGCTGGTATAATCCTTCAGAAGTGTTTCTGCTCCTCTGCCTTTTATGAACCCACTTGAATCTCTTCCTCATGAAAC CAAAAAAACTACCCATGATACAGGGTGCAACAACAATCCCAATTATGCTATGGAAAGCAACGACTAGTGAAGCCACCACA AGAGCACTTTGCAAAATGACTAGACCTGTTTTTCCAACCTTCTTGCAAACCCGCTTAATTATTAATCTTCTTTGGGTTTT CCCTCTCTTTGAATTTAGTCTTTGCAGGAGCAACATGTATCTTTCATGGATGTCGCCGAAGCTTACACTGGACAAAGGGT TATCTTGCAATACAAAGGAAGCAAGCTTTGTATAGATACATTGGTTTCCATCAAATTGCACTCTTTTGCTTTGCTTAACA ATGGTTGTGATTCTATCACTGGCAAGCCGTGTTTGGCGCACGCCTTCAAGGATTGTGTCGCAACAACGGCATGCTTCTAA GGTGGCTTCGAAGTAATCCACCAAAAGATGATGCATCTTCATGCTCCGTGTCATGTTTGTCACAATTTCTTGTCGGGGTT CCAGCAAACATTCAGTAAGATGCATGAAGGAAGTAAGGGGAGAAGACATGGAAGAGTCTGATTTCTGCTCTTGAGCTTTG TTGCATATTTCAACGTAAGATTTTGTTCTGAATGCTTTCAGGTATTCTCTGTTTACGTTTGGCTTGCCAGAAAAGCTATC TTTGTCACATTCTTTGCGTGACCTACCTGCATTTTTGCATTCATTTGCCAATAATTAGTTTCTGAAACAATTAATGATTG AAAGGAAGATGATGATAAATATTAGATCAAGAGAGAAAGTGTGTAGCAGAAATTAAACTCACCCGCTTTTCTTTGCAAGA GAGAGAACCACTTTGTCATCGTTTAACTGAAATAAAAGTGTTTAGAGATTAAGTTTTATATGCTGCTCATTTTCTTTTTA ACCTATATAATGTTTGGATATATATAGAGAAAGAGGGAAAGAGTGTTTTCTTGGTTGGGGAAGGAGTTACGAACTTAAGA CGAAAACCGTTCTGACAGTCACCACCACCAAAGATAAGCATGCTCTGTTATGGGTTTGATTACTCAAGTTAACTTATCTC ACAC
CDS sequence (LotjaGi1g1v0431300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTCGACCATAAACACGGACCAGATCATCGTCGACGAATCCAAATGTTCAGAAATCGAACGACCGCAACAGAGAAA CGAGGAAGATGAAGAAGCAGAGTTACAGAAGCTTCTACTCCCCAACGTGGATGAACTTCCCCTCACTCCTCCTTCCGCCG TTGAAACCAACTTTGTCTCTTACTTCGCTCTCGATTTTACGAAGCCAGGTCATGATCATTACATTTACCGGCACGCCAAT GGGTTGTGCGTGATCGGGTTGGCGCCTTCCCATATTGCTTTCAAGGATGAAGGTGGAATCACAGCTGTAGATTTCAATGT TGGAAAGTCTGATCGTAGCGGGATGAAGGTCACTGGAAAGCGGAAGAAGAATGCACAACACCTTGAGTCCAACTCGGCTT TGTGTAAAATTTCTACAAAAAATTATTCTTATATCGTGAGGTGTTGTGTGAAAGGTTCCCTTTTGGAAGTGAATCAACAG TTAATCAAGCAGCCAGAATTGCTTAATGTTTTGGCTGACAGAGAAGGATACATTGCTATTGTCATGCCAAAACCAGCTGA TTGGCTCAAGGTCAAGGATTCCCTTGTCAGCATTCAGGAGTACAAGAAAGCGAGGGGAACCAATTGA
Protein sequence (LotjaGi1g1v0431300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSTINTDQIIVDESKCSEIERPQQRNEEDEEAELQKLLLPNVDELPLTPPSAVETNFVSYFALDFTKPGHDHYIYRHAN GLCVIGLAPSHIAFKDEGGITAVDFNVGKSDRSGMKVTGKRKKNAQHLESNSALCKISTKNYSYIVRCCVKGSLLEVNQQ LIKQPELLNVLADREGYIAIVMPKPADWLKVKDSLVSIQEYKKARGTN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 22 | 206 | 185 | 1.1E-79 | ||
| Gene3D | 64 | 206 | 143 | 3.0E-13 | – | |
| SUPERFAMILY | 67 | 204 | 138 | 1.02E-18 | ||
| Pfam | 99 | 204 | 106 | 1.0E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0431300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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