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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0434100 |
| Transcript ID | LotjaGi1g1v0434100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NADH-ubiquinone oxidoreductase chain; TAIR: AT1G20460.1 NADH-ubiquinone oxidoreductase chain; Swiss-Prot: sp|Q8R4H2|ARHGC_MOUSE Rho guanine nucleotide exchange factor 12; TrEMBL-Plants: tr|V7AU56|V7AU56_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0434100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:92867414..92870596) extracted from Lotus japonicus Gifu genome v1.2.
ATGATAACGCGATCGAATCTGGCGGAGCAGCTGCGAGAGTATCAGATTCGATCAAAGCATGACTGGGCCTCTGTCTCGTT CTTCTCCTCCACTTCTTCAAACATCGCTGCTTCCAAGTATGTCAAACCAAACCTCTTCTTTTATATATAATCATGAAATT GTGAATTTTTACCCTGTTATTGTTCAAAGTTTCCCTCTTTTTCCGTTTATTGTTCTTTCTCGCAATAATTGGAATCATGG GCTAACTCGATTAGAGTTGTAATTTACTTCTATGAATCACAAATTCGGCTAGGTTTGGCTTGGTTTTTTTATTCAATGTT TCTTTCTCGCGGGAATTTTTACAATTTTGCTGTTGAGATTGAAATTATCGTTCATATGATGAAGATGAAAGTATTATAGT AAAGAAATTGGTGGGCAGGTACAGGGTTATTCGTTTAGGCTTGGTTGTTGTGATTATTGGATTAGAATTCAATTTTTTCA CATGCAAGCATGACATTTTGATTTGGGTATGTGTTGGTTGTGCCTAATCTTAAATTTGAAAAAGGATATTGCCCAAAAGA AAACATGGTTTTGATTCACATTATCCTCTAATCCCTAAAAGAGGGCTTATGTGTCATCCAGACTTGCTGGGCATAATGTT GAAATTAGATGGTGGCATTCATTTGTTACAAATGCAAAATAAGTAGTTATTAGAAGTAAGAGAAGATTGCTGTGCTTTCG AATCTGATCTCGACTGTATATATAGTGAGTGCTTGTCTGGAATCTAGAGTTAAGTTTGTAGTTTTAGCACTATTAGTTAG CATGACAGGTATAGCTTGATCAGTCATAGAGTTGTATATTTCGAGCTTCGTAGTTCACAGTTTTGCCAAGCCTTTCAAAT CGTCTATAGTTATCAATTATCAATCGAACCAGTATATTTTTGTTGAACTTCAAAAGGTATTGCAAACCTGTGTTATCAAA TATCCACCATGGCAAAATCTCATGGCGGGTTTTTGTCTCTCCGCCATGGCCGATGTCCCTCTATAATCTGCCATAATCTG CCATTATTATTTGTCAAATATGGCGGGATTTTGGCTCTCCGTCACAGGCCGCCACCCACAATTGACAACATTAATGCAAA CATACAATAGTGTTTTACTCATACAATTAAGTAAGTTTGGGGTCACGAGGGTGACGGAATATCGAGTGATTACTGGTAGT GTCTCCGTTATTTAAGCTCTCTCCTGCTGAAGTTGGATGTCCTGATTGTTTTCAGTATTGGAGAAACCTGAACAACCACG CTGTGTATTAGATATAATGATGCTTACTTGACTTTATTTAAATATACAGCACAATTTCAGTTTCATATAAGATCAAATGT CTTTATCATAAAATAAAATAAAAATCAAATGTTTTATTTGCTTGAACTGATTACTGTCAGCTGCAACTGTATTCAGACTA ATGACGTGGGGTCCTAAAATCCTTATAAAATAATTGCAGTGTGTAGTCTTGTTAGATGGATTAATTGCTGTGTTTTTGTT GTTGCTTTTGGAGTATGATGGATCATGGATATTGATGCCTTATCTTTCCTCTTTGTTGCTCTGCAGGGTGGATGTGGTGG TCTTTGTAATATGGGAACTTGTTATTTTGGCTTTCTTGGTTTTCTCAGTTGTCTCTTTGTACTTTAAGCACATCCAGCTT GCGTTTATATTAGTCTGCATCACTGTGCTATTGCTTTTGTGCATGAAAATTACAAAGCAAGTAAGACTGGCAAGGAAAAA GAAACGAAGGATGCTTCTTCCATTGTCAATGTAAACTGGTATTAGGTCTTAATCTCCTTGGCTTATTACCTATAGTGTCA CCACCTTCTTACTGGAGTAGGGTCACGGCCATTCATGACCATGCATGTCCATTGGTCCAGCTTCTCACTCATCGTCGCTG TATGTAACATCAGACTCTGCTTATAGCAATTCGGCTAAAGAGTATAATTGAGGTTTTCACATCAATACAAGCTTATCCAA TCGGGTCATGTAGATCATTGTTGGAGGTGGTGTAGCTTTGTAGTGCTAGGTCTTGTCAAACACCTATATGTTAAGCATTT CTTTTTGCTGCTTATGTTTCTGTATACGTAGTGCCATTGATGCAAGGTTACTATTGAGCTTTTGACCCCTTGACAGTCTT ACGAAAATTACATTTGAAAGTTCAAATGCCATCAGATGGGTTCTTGTATAATGACATTTGGGAGATAGTTTTAGCAGTGT GATATTGTGCACAGGTGCTTAAATGATAGACGTGAAGTCTTTCACCTTTTCTAGTGTTCGGATATGATTTCTATGATGTT TCCCCTGTTAACTTCACTTTGAACGTGGAAACATATCCTTATCTGTCTTAAGACCTGGCAGATTTGTGATTTTATAATGG AATATTTACTGGATGGTTCCATATAGCAATTCAATTTTTTTATATTTGGTACAGTCCACATATTATATAACCTTGTTTTA TTTCCACACATTTGACACGAAGTTGTCCAATGATTCTTCACTGATATCTGACAATTCAAATAGATTAGCTGCGGTGGCTT CAAGTGAAGCATTCTCTCATTTTCATTTCTTTTGGGTTACTATTATCATTTTAAGTGCATGTTTGGATATTCTTTTACAA TTGATTTTGAAGTCAAAATCAATTCTGGAGATAAGTAGCATTTGGGTGTCATAATTGATTATGAAGAAAGAAATCCGGCT ATAATAAGTTTGTACTCCGCATGTATTAAACTCTTTCAAATGCTAGCATACCAACTTCCATGTTTGTGATTGATATAATA CTATAATTTCATTTTCTCACTATGGATTGAAGAAATGGATCTTTATGCCCTTGGCAACAATGCTCCAAATGGCTCCTATG ACAACCAGCACGCTCAGAATCGTCCCAACAGCTCCAAGCGTCCAGTTTAGGTACCAAGTGGTGCTAAATTTCCTTGGTTT CTTAATCTCTATCCACATGAAACAAGGATAAGCTAAGGTTATTGGCAGAGCCACACCTCCAATCAGGCCTGCCAAGCTTG GCAAGAATGGAAATGCTATGGCAATAAAAAAAGCAAGACATCCGAAGAGAACCCTGATCACAACTCGCAGCCACCTTGGA CAAGGTCTGTTCTTCTTGATTGTGTACCTGGATTCCAGATTGTCAAATATTGGCATTGCATAG
CDS sequence (LotjaGi1g1v0434100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAACGCGATCGAATCTGGCGGAGCAGCTGCGAGAGTATCAGATTCGATCAAAGCATGACTGGGCCTCTGTCTCGTT CTTCTCCTCCACTTCTTCAAACATCGCTGCTTCCAAGGTGGATGTGGTGGTCTTTGTAATATGGGAACTTGTTATTTTGG CTTTCTTGGTTTTCTCAGTTGTCTCTTTGTACTTTAAGCACATCCAGCTTGCGTTTATATTAGTCTGCATCACTGTGCTA TTGCTTTTGTGCATGAAAATTACAAAGCAAGTAAGACTGGCAAGGAAAAAGAAACGAAGGATGCTTCTTCCATTGTCAAT AGCCACACCTCCAATCAGGCCTGCCAAGCTTGGCAAGAATGGAAATGCTATGGCAATAAAAAAAGCAAGACATCCGAAGA GAACCCTGATCACAACTCGCAGCCACCTTGGACAAGGTCTGTTCTTCTTGATTGTGTACCTGGATTCCAGATTGTCAAAT ATTGGCATTGCATAG
Protein sequence (LotjaGi1g1v0434100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MITRSNLAEQLREYQIRSKHDWASVSFFSSTSSNIAASKVDVVVFVIWELVILAFLVFSVVSLYFKHIQLAFILVCITVL LLLCMKITKQVRLARKKKRRMLLPLSIATPPIRPAKLGKNGNAMAIKKARHPKRTLITTRSHLGQGLFFLIVYLDSRLSN IGIA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 107 | 107 | 1.3E-57 | – | |
| Phobius | 1 | 41 | 41 | - | – | |
| PANTHER | 1 | 107 | 107 | 1.3E-57 | – | |
| TMHMM | 42 | 64 | 23 | - | – | |
| Phobius | 42 | 64 | 23 | - | – | |
| Phobius | 65 | 69 | 5 | - | – | |
| TMHMM | 68 | 87 | 20 | - | – | |
| Phobius | 70 | 88 | 19 | - | – | |
| Phobius | 89 | 164 | 76 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0434100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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