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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0435300 |
| Transcript ID | LotjaGi1g1v0435300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TSA: Wollemia nobilis Ref_Wollemi_Transcript_29242_1275 transcribed RNA sequence; TAIR: AT1G63610.1 hypothetical protein; Swiss-Prot: sp|A0PW69|ISPE_MYCUA 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TrEMBL-Plants: tr|I3S0D1|I3S0D1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0435300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:92964137..92967991) extracted from Lotus japonicus Gifu genome v1.2.
AAATTTCTCTGGAATTTCCAAGTGAACTCTGAGACAGTGCAATTTTGTTTGATTGATGATCATGTATTTGTTGACAGGGA AACCCTCCTTCACACCCAAATTGGTGCTGTCTTCTTCTTCTTCAACTTCATCTTCATCGTCATCTTCAATTTCCATCGTT TCATTCCGAACTCGTTCAACCACATCGATTAGTTTTCCCAGAAATTCAAACCGTAAAGGAAGATTTCCATTGAGGGTTGA AGCTTATGATTCCTCCACCAACCCTGCTGGAGATTCCAATTCCAAACCCCCTAACGGCACTCTCGTACTGCTTCCTCTTT CAATCTTACCCAATTATTATATATTGTTGTTCATTACAGTAATTTAAGTATTTTTATGAACAACATACTTAGCAATTAGC ATGGTTTGTGATTGGTTTGTTTCCAATGTGTTCTCTTATCCTAAGTTTATTCAGCATTATATTTATATGTCCCACCCCAA GTGATTATTTTGGTACTAAGTGGGATGTATGGTCAAAAACAACTTGTTCAAGGAAAAAAAATCTACTTTTGTTATATATG ATTTTGTTCCTGATTAATGATTATGCCTTTTTGAAATTACTAGTCAAAGAGCAGGAGAGAGATTTTGCTGGAATATGTTA AGAATGTGCAGCCGGAATTTATGGAAATGTTTGTGAAAAGAGCACCTCAACAGGTATGCTGTTGACTTGCTATCAACATG TATTCATCACTGTTTATTAATTGCCTGGTGAAAGTGGCTGTTTGTATTGATTTTTATGCGATGCGCTCTTGTTGAATGGG ATTTCTTTTGATGATTAGGTTGTGGATGCTATGCGGCAAACAGTGACAAATATGATTGGAACACTCCCCCCTCAATTTTT TGCTGTCACAATTACCACTGTAAGATTATGCGCATCCCCTCCCTCCCCTTTTAGTTTATTTGCATTTACAATCATTTTAT GATGCGCCAGTCTCTGCTAGCTTTGATGTTATATTTAGGTGGATAGCTAATCTCTTGGTTTCTTTGATGATTTTTTTCTA TGAAGTGGGAAACTTTGCTTTGCCCTATGTATCAGTCCCTGAAATTTGTGCGTTGGTCACTATTCCCCTTTTTATGGTTG GTGTTGTTGTCATATTTGTTCTTAAGTTTTTACTAAGTGTCACAATCCCCGAAATTCATAATTTTAAAAGAAAATTAAAA AGCATACTAATTATCTTTGCTGCGAATTTCAGAACCCCTCATTTCTTACCTTTTTGCATGGTAGGCATAAATGTTAGAGC CTTTTATAAGTTCCTCCCCTTACATTACTTGTCTTAAATTGTTGAGGAACTTCATTGATACGAATAACTATTCTGGTGGT TGAAAAATAACATGTGTTTAGCACAAGATGACCGAACTGGTAAAGCAATATTAAGCCATGTAGTTGGCTTAAACTGCAGT TCTTACTTTTCGTTGTATCATTCTCTCTTACTTATTTCAGTGGAATAATTTGGATTTATTTTTCTTTCAGGTAGCTGAAA ACCTTGCACAGCTCATGTACAGTGTCATGATGACTGGATACATGTTCAAGAATGCACAATACCGTTTGGAATTGCAAGAA GGTTTGGAACAGGTTGCCCTTCCTGATGTGCAAGATAAAAAGGTAACACTATTTTTCTTCCTTCTTTTCTGGGATGATGT GGTTCAGTTTAGAAAATGTCGAAGCACATGGATAATTGTAACGGTGTGTTTAACTAGTTCTGGTGGTCAGATGGCTTATT TGGACCTTTCGGCCCAGTTTCCTATCATTTACCACTTTTCCTTTTTTAGAATAGAGGCGGAAAAAATCTGAGGACTTTCT TTAGTATTGCGTCAGCTAGCAGAAAAGAAATAATCTTATTATTTGGTAGGTTAGTTTCAGGCATAAGAGTGAAGAGCATT AAGTATTTGAGAATTCGGTATTCAGAAATTGCTTTTGTGACTTATTGACCTTAGCATTTTCCCCACTAATCAAGAAATGC CTTATTTTGTGCATTCTTTAATTTGCACTCCTAAAATGTTGCAGGATAAGCCAGATTATGCACCTGGGACACAAAAGAAT GTTTCAGGTGAAGTCCTTCGGTGGAACCATGTTTCTGGACCTGAAAGAATAGATGCTAAAAAGTATATTGAATTACTTGA AGTGGAGATTGAGGAGCTGAATCGTCAAGTTGGAAGACAATCTAGCAATGCACAAAATGAACTGTTGGAATACCTAAAAT CTCTTGAGCCTCGGAACTTGAAGGTTAATTTTCACTCTCCTTTTGTCTGTATAACATACTTCTTTGCCTTTATCCAGCTG ATGTGAATTGTCTGCTTAGCTTATATTTCTATACATTGATCTGCACTGTAGCTTTTAATGTGATTAATTTCTGAAAAATT GGGCTCATAAAAAAATTGTTGTCCATTATGTTGAGTCTGCAATTTTAGAATCAGCAGTGAACACTTTGGAATTGCATTTC TGTTCAGAACTAGGTGTTAGTTTGGTGTTAATGTACTCACCAGTTATATATCCACTTCTGTTAATTTACTTGAGTAGGTG CTCTATATATTATGATATTTGCTTCTGTACCTTTGATTTGACGTTCCCATTCAGATTACAAAACTTAATAATTTTTTTCC TGTCAATTTCTGCAGTTAGCATCTAGGAGCATCATTTATTGAAATATGTCAATTATGCGCCATAGTAATTTGTTTTTGTA GGACTTGACTAGTAGTGCTGGGGAGGACGTTGTGCTTGCAATGAATACATTTATAAAGCGCCTACTGGCTGTTGCAGATC CTAGTCAAATGAAGGTTTGCCTCCTCATTATCTCAATTTCTTGATCTGCTTGTCTAACCTTTTCAAATTACCATTTGGTC TATAAGTTGTACATTACTTTGCCTTTTTGGTTACTATTACAAAAATCATTATTTTTTCAGACCTTTGTGTAACTTGGTCA ATGTTGATTTTTTTTATAGACTAGCGTGACTGAGACTAGTGCAACTGAACTTAGCAAACTTCTTTATTGGTTGATGGTGG TCGGGTACAGCATTCGCAATATTGAAGTTCGTTATGACATGGAAAGAGTACTTGGTACTCCTCCAAAGCTGGCTGAATTG CCACCAGGTGAAAATGTTTAAGCAGTCATAAAGTTGGTCATTGAAATACGGTTGTGCCCCCAAGTTGGAACCCTGTTCCC TAAGACTTTTGTTGATTGGTTGAAGGCACAGTCATGACCTGAAGGAGAAGGCTGCATTTTTTCAGAGGCCCTGAACTATT GGTTTCCTGATAGTATATCTGATGAAACATTTTTTCTCTTTTGGGTATATCTCATGAAACCTAACCCTTTTTCTTTTGGG TACGATGAAACTTTTATTGAGAGTTATACCAACAAGATATCAAGATTGATTCCCTGAAGATGTTGTCTATCGTTTAATTT ATATGTAACTGCTTTGACAGCATGAACTGTAGTGAATCTTTTATAGACAACAATGGTTGCTGAGGTTGTCAACATAACTA CGCCAAATCTGCATGTTGCTTCCATCCGAGTCTTGCGTTGCCTGATCAGGCCGTTCATTTTTATAGCAGCATTCTTACAT TGTTGGGAACTTTACATGTGTGTTTGAATTTTAGTTAAACAGATGACTTTTATCTCAATCCATAAGAAGAGTTTGGTTCA CTTTTAATTTTGAAGTAGACGACTTTTATCTCAATCCATAAGAAGAGTTTGGTTCACTTTTAATTTTGAAGTAGACAGTT CTTTCTTACTCACACAACACTCACATTGGAAATGCACGTTTTAAGTTAAAAAACTAACTACCATCTCAACCAACTTGTAC AGTGCAGAATGTACC
CDS sequence (LotjaGi1g1v0435300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCATGTATTTGTTGACAGGGAAACCCTCCTTCACACCCAAATTGGTGCTGTCTTCTTCTTCTTCAACTTCATCTTC ATCGTCATCTTCAATTTCCATCGTTTCATTCCGAACTCGTTCAACCACATCGATTAGTTTTCCCAGAAATTCAAACCGTA AAGGAAGATTTCCATTGAGGGTTGAAGCTTATGATTCCTCCACCAACCCTGCTGGAGATTCCAATTCCAAACCCCCTAAC GGCACTCTCTCAAAGAGCAGGAGAGAGATTTTGCTGGAATATGTTAAGAATGTGCAGCCGGAATTTATGGAAATGTTTGT GAAAAGAGCACCTCAACAGGTTGTGGATGCTATGCGGCAAACAGTGACAAATATGATTGGAACACTCCCCCCTCAATTTT TTGCTGTCACAATTACCACTGTAGCTGAAAACCTTGCACAGCTCATGTACAGTGTCATGATGACTGGATACATGTTCAAG AATGCACAATACCGTTTGGAATTGCAAGAAGGTTTGGAACAGGTTGCCCTTCCTGATGTGCAAGATAAAAAGGATAAGCC AGATTATGCACCTGGGACACAAAAGAATGTTTCAGGTGAAGTCCTTCGGTGGAACCATGTTTCTGGACCTGAAAGAATAG ATGCTAAAAAGTATATTGAATTACTTGAAGTGGAGATTGAGGAGCTGAATCGTCAAGTTGGAAGACAATCTAGCAATGCA CAAAATGAACTGTTGGAATACCTAAAATCTCTTGAGCCTCGGAACTTGAAGGACTTGACTAGTAGTGCTGGGGAGGACGT TGTGCTTGCAATGAATACATTTATAAAGCGCCTACTGGCTGTTGCAGATCCTAGTCAAATGAAGACTAGCGTGACTGAGA CTAGTGCAACTGAACTTAGCAAACTTCTTTATTGGTTGATGGTGGTCGGGTACAGCATTCGCAATATTGAAGTTCGTTAT GACATGGAAAGAGTACTTGGTACTCCTCCAAAGCTGGCTGAATTGCCACCAGGTGAAAATGTTTAA
Protein sequence (LotjaGi1g1v0435300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIMYLLTGKPSFTPKLVLSSSSSTSSSSSSSISIVSFRTRSTTSISFPRNSNRKGRFPLRVEAYDSSTNPAGDSNSKPPN GTLSKSRREILLEYVKNVQPEFMEMFVKRAPQQVVDAMRQTVTNMIGTLPPQFFAVTITTVAENLAQLMYSVMMTGYMFK NAQYRLELQEGLEQVALPDVQDKKDKPDYAPGTQKNVSGEVLRWNHVSGPERIDAKKYIELLEVEIEELNRQVGRQSSNA QNELLEYLKSLEPRNLKDLTSSAGEDVVLAMNTFIKRLLAVADPSQMKTSVTETSATELSKLLYWLMVVGYSIRNIEVRY DMERVLGTPPKLAELPPGENV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
| PANTHER | 18 | 341 | 324 | 6.2E-143 | – | |
| PANTHER | 18 | 341 | 324 | 6.2E-143 | – | |
| MobiDBLite | 64 | 83 | 20 | - | – | |
| MobiDBLite | 67 | 83 | 17 | - | – | |
| Pfam | 91 | 170 | 80 | 4.6E-20 | ||
| Coils | 212 | 239 | 28 | - | – | |
| Pfam | 243 | 326 | 84 | 8.2E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0435300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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