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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR008479
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 18 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.466s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v2280650.1
n.a. Uncharacterized protein TCM_034368 [Theobroma cacao] gi|508723329|gb|EOY15226.1| chr1 26792428 26795874 +
2 domain predictions
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Lj2g3v0636800.1
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508774207|gb|EOY21463.1| chr2 10330580 10334340 -
2 domain predictions
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Lj2g3v0636800.2
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508774207|gb|EOY21463.1| chr2 10330580 10334340 -
2 domain predictions
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Lj2g3v1022320.1
n.a. Seed maturation-like protein [Medicago truncatula] gi|357473529|ref|XP_003607049.1| chr2 16017432 16021713 +
2 domain predictions
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Lj2g3v1510830.1
n.a. n.a. chr2 23987063 23993732 +
2 domain predictions
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Lj2g3v1510840.1
n.a. Uncharacterized protein TCM_016604 [Theobroma cacao] gi|508777967|gb|EOY25223.1| chr2 23987063 23990602 -
2 domain predictions
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Lj4g3v3117380.1
n.a. Uncharacterized protein isoform 3, partial [Theobroma cacao] gi|508774208|gb|EOY21464.1| chr4 42298120 42315942 +
2 domain predictions
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Lj4g3v3117390.1
n.a. n.a. chr4 42299328 42316247 -
2 domain predictions
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Lj4g3v3117400.1
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508774207|gb|EOY21463.1| chr4 42299420 42316425 +
2 domain predictions
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Lj5g3v2112060.1
n.a. seed maturation protein PM23 [Glycine max] gi|6648962|gb|AAF21309.1| chr5 30255263 30258163 -
2 domain predictions
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LotjaGi1g1v0435300.1
n.a. TSA: Wollemia nobilis Ref_Wollemi_Transcript_29242_1275 transcribed RNA sequence; TAIR: AT1G63610.1 hypothetical protein; Swiss-Prot: sp|A0PW69|ISPE_MYCUA 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TrEMBL-Plants: tr|I3S0D1|I3S0D1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0435300 LjG1.1_chr1 92964137 92967991 +
2 domain predictions
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LotjaGi2g1v0191000.1
n.a. UV-B-induced protein, chloroplastic; TAIR: AT1G48450.1 alanine-tRNA ligase, putative (DUF760); Swiss-Prot: sp|Q9LVJ0|UVB31_ARATH UV-B-induced protein At3g17800, chloroplastic; TrEMBL-Plants: tr|A0A072UAR1|A0A072UAR1_MEDTR Plant/T1N15-5 protein; Found in the gene: LotjaGi2g1v0191000 LjG1.1_chr2 62241542 62245989 -
2 domain predictions
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LotjaGi2g1v0252600.1
n.a. MAR-binding filament-like protein; TAIR: AT5G14970.1 seed maturation-like protein; Swiss-Prot: sp|Q9UJT2|TSKS_HUMAN Testis-specific serine kinase substrate; TrEMBL-Plants: tr|I1N5Z4|I1N5Z4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0252600 LjG1.1_chr2 71815425 71823198 +
2 domain predictions
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LotjaGi2g1v0338200.1
n.a. Uv-b-induced protein, chloroplastic; TAIR: AT1G32160.1 beta-casein (DUF760); Swiss-Prot: sp|Q9LVJ0|UVB31_ARATH UV-B-induced protein At3g17800, chloroplastic; TrEMBL-Plants: tr|K7K168|K7K168_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0338200 LjG1.1_chr2 81531524 81539434 -
2 domain predictions
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LotjaGi3g1v0088500.1
n.a. ATP synthase subunit alpha; TAIR: AT3G07310.1 phosphoserine aminotransferase, putative (DUF760); Swiss-Prot: sp|Q9LVJ0|UVB31_ARATH UV-B-induced protein At3g17800, chloroplastic; TrEMBL-Plants: tr|I1JM64|I1JM64_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0088500 LjG1.1_chr3 9976877 9980995 -
2 domain predictions
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LotjaGi3g1v0088500.2
n.a. ATP synthase subunit alpha; TAIR: AT3G07310.1 phosphoserine aminotransferase, putative (DUF760); Swiss-Prot: sp|Q9LVJ0|UVB31_ARATH UV-B-induced protein At3g17800, chloroplastic; TrEMBL-Plants: tr|G7LF69|G7LF69_MEDTR DUF760 family protein; Found in the gene: LotjaGi3g1v0088500 LjG1.1_chr3 9976877 9980995 -
2 domain predictions
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LotjaGi4g1v0465500.1
n.a. UV-B-induced protein, chloroplastic; TAIR: AT1G48450.1 alanine-tRNA ligase, putative (DUF760); Swiss-Prot: sp|Q9LVJ0|UVB31_ARATH UV-B-induced protein At3g17800, chloroplastic; TrEMBL-Plants: tr|I3SR76|I3SR76_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0465500 LjG1.1_chr4 83573563 83577513 +
2 domain predictions
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LotjaGi5g1v0325500.1
n.a. MAR-binding filament-like protein 1 isoform 1; TAIR: AT2G14910.1 MAR-binding filament-like protein; Swiss-Prot: sp|Q96NZ1|FOXN4_HUMAN Forkhead box protein N4; TrEMBL-Plants: tr|A0A0B2PBZ7|A0A0B2PBZ7_GLYSO Uncharacterized protein; Found in the gene: LotjaGi5g1v0325500 LjG1.1_chr5 64319546 64322652 -
2 domain predictions
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