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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0436800 |
Transcript ID | LotjaGi1g1v0436800.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Basic helix-loop-helix transcription factor; TAIR: AT2G18300.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q8GY61|BH063_ARATH Transcription factor bHLH63; TrEMBL-Plants: tr|C0JP13|C0JP13_LOTJA Putative basic helix-loop-helix protein BHLH7; Found in the gene: LotjaGi1g1v0436800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:93168422..93171269) extracted from Lotus japonicus Gifu genome v1.2.
AACAAATGAAGAAAAATTTAGAGGAAGTGAGATAGAAGATAAACTCGGGTGTGAATGAATGATGACCCTATTATTTCTCA AGTTGATATTTTTTAAGTAATTTGTCCGGTTTATATATACCTCACTCGTTTCCCTCTTGAACCTTAACAACATTTCACTC TTTCTCCTCCTACTCCAACCTCTCTGCATCTCCTGCACCTCTGCATTTCCTCTGAAGTATTCTTCAAAATTTGCCCCACA CTCTATTACTACTACTAATACAAATCACCTAGTAACAACATGTTGCACTGTCTCAATACACCGGGAAGTCTTGCTGGGAA CTGCTCCGACATGACGGTGTTGGAAAGGCAACGGATCAAGTTGCCACAAGGAAACGGGTTCAATTGTGTGTTCCCTTCTT CTTCTTCTTCTGATTCTGGTTCTTCACTTGCTGAGGTAGTTGCTCAGGCTCACTACATCAAGTTTCATATGCCACCAGCT GGGCCTGAACCTTCTCCTGCTTCTGGGCCTGATTTGAATTCTGCAATTTCAAGGACTTTCAGCTGTCCACCTACTCTGGT AGAAGCTAAAGCCAATGAATTTTTCTCAATTAAGAAAGAGAGTTATAAGAAGAGGAAATCTGATAAGCCTCACAACCCCA AGGTGTGTGTGTTTGATATAATGTTCCAAGAGAAAAAAGAAAAGGCAATTACTTTCTTTGAGTTGGTTAAATTGAACTGC TTTTTGTTTAGATTGTTGCAGAAAATGATAGTAAAGACAAGAGGATCAAAGTGGATTCTGAAGATGGGGAATCCAATATC ACAGGGAAGATCAGCATCAAGGATAACAAAACCGCCACAAAAAGTAAAAACAGGGGAACCTGTGCAAATAGTTCAAATTC AAAGGAAAATGAGGATCAAAAGCTAGACTACATTCATGTGCGAGCACGTCGTGGCCAAGCCACTGATAGCCATAGCTTAG CTGAAAGAGTGAGTTCTAGTTAACATGTCTTTGCTTTGTTATAATTTTCTTAAGATACACCTAGCTTGTGCCATGTTCTA ATGCATTTTATGTTTCAATTTTTGTGCAGGTTAGAAGGGAAAAAATTAGTGAGAGAATGAAGTATTTACAAGATTTGGTT CCCGGTTGCAACAAAATTACAGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTTCAGTCTCTTCAACGACAAGT TGAGGTAATTAAGAGTTATTAGGTCCATTCCATTCTTAAACTATGACAATGACATTGATCCATATTATGTGTGCATGTTT GAAAATCCTTCTACAATTGTAAATTCAAAATCAACTATGCAAAAAAACTTTCTTGAGTAGCTTCTAGAGTACTGACTAAC TCGGAAAATATAAGCCGATCCAAACATGCTATAAAATGTTACGACTTATCTAAAGTTTATATAAAGACCCTTCAATGCAA CTCACTCTTTTGTGTATTAATTATATGCAGTTCTTGTCAATGAAATTAGCTACTGTCAACCCAGCCCTTGAATTCAATAG TGATGATCTGTTTGACAAAGTGGTAAGGGATATTCAGATCACAGATCCTTATCTAATAGTTCAATTACATTTTTTGTTTC TGATAAGATTTTTTTATATGATGTATCCACACAGGTGTTTCCTTCTTGTGATTCAACTTTTCCAGCTATAAACTTGACTA ACCCTGCCACCTATCTTCAATTCAATTCACCACCACAGCAAATGGTTTCTTATGGAGGATTAGATACCGGGATGAACATG AACCCTTCCGATGTAGGGCTTCGAAGGACCATAAGTGCCCCGGTATCAGTACCTGAGACATTTATTGACTCCTCTTGTTA CACTGTAGGTTCTCTCTTATACCTGAATGTTCCTGGTTTTGCTTGTTATGTTGCTGATTAGCTTTCTCAATTTGATCTTG TTTATTAATGTTGCAGCAAATTCTACCCCCCACAACATGGGAAAGTGATTTTCAAAACCTTTACAACTTGAATTTTGATC AAGCACGAGCAACATCCTTTCCTTGATTCCTTCTTAGCCATTTACAGGTAGCTAAAATTTTTGTCTTGTCAAATCATATT TTTTCTCTTAGCATGGTGTCTTAAAAGTACAAAGTAGAGGCAAAAGAGAGTGGAATGAGTAGATGATAGTGACGTTAGAG CCCACTGATGTTGATCAAGCATAGAGACCATTTTTATGTTTTTAATAATTCAAAATAAAAGAAATTCAAATACATCTGTT AAATCATTCAATTATGCAGCTGGTTTTCTAATAATGTCATTCTCTTTCCCACTATTTTTAGTCATAGATAATGTAAAGGT CTATGATGAAGGCTGCTATAGAAGTACATAACACAATTGACTTTGTTCAATATCTCGTCTGGAAGTTTATCTTTGGAAAC TCAGTAGATTTTTACACTACCAAGAGAAGTCATTTAGGAGAATTAGTAGCTTATTTATAGGGAAAGAAGTGATTTTGAAA AGTTTAAACGTATTGTTTGACTGCCTAATCCAAATTCTAAAAGTGTTGTTTGACATCTCTGCAGGTATAGTAGACGCTAG CAATCTAAAGATGGAGGTGTAGACCAGAAATTGTATCACCATTCATTGGATTAACTCGCTCCAAATGCCTCTTATCAAGA TTAATTGATCCTTTTCTTTTCTAGTACATAGCAGATATATTAGATATAAGATATTGTTTGTATACTGCTCCATGAATTAA TAAAATCATATTAATGCATGTTAACTTCAGTCACATTCCTTTGAAAGTTCAAATTAGAATATAGCCGATGGCTAGTGCCT AGTAACGATGAGTAGCCTGATAGGGACCAGATCAGGCAACTAACCCAA
CDS sequence (LotjaGi1g1v0436800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCACTGTCTCAATACACCGGGAAGTCTTGCTGGGAACTGCTCCGACATGACGGTGTTGGAAAGGCAACGGATCAA GTTGCCACAAGGAAACGGGTTCAATTGTGTGTTCCCTTCTTCTTCTTCTTCTGATTCTGGTTCTTCACTTGCTGAGGTAG TTGCTCAGGCTCACTACATCAAGTTTCATATGCCACCAGCTGGGCCTGAACCTTCTCCTGCTTCTGGGCCTGATTTGAAT TCTGCAATTTCAAGGACTTTCAGCTGTCCACCTACTCTGGTAGAAGCTAAAGCCAATGAATTTTTCTCAATTAAGAAAGA GAGTTATAAGAAGAGGAAATCTGATAAGCCTCACAACCCCAAGATTGTTGCAGAAAATGATAGTAAAGACAAGAGGATCA AAGTGGATTCTGAAGATGGGGAATCCAATATCACAGGGAAGATCAGCATCAAGGATAACAAAACCGCCACAAAAAGTAAA AACAGGGGAACCTGTGCAAATAGTTCAAATTCAAAGGAAAATGAGGATCAAAAGCTAGACTACATTCATGTGCGAGCACG TCGTGGCCAAGCCACTGATAGCCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAAATTAGTGAGAGAATGAAGTATTTAC AAGATTTGGTTCCCGGTTGCAACAAAATTACAGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTTCAGTCTCTT CAACGACAAGTTGAGTTCTTGTCAATGAAATTAGCTACTGTCAACCCAGCCCTTGAATTCAATAGTGATGATCTGTTTGA CAAAGTGGTGTTTCCTTCTTGTGATTCAACTTTTCCAGCTATAAACTTGACTAACCCTGCCACCTATCTTCAATTCAATT CACCACCACAGCAAATGGTTTCTTATGGAGGATTAGATACCGGGATGAACATGAACCCTTCCGATGTAGGGCTTCGAAGG ACCATAAGTGCCCCGGTATCAGTACCTGAGACATTTATTGACTCCTCTTGTTACACTCAAATTCTACCCCCCACAACATG GGAAAGTGATTTTCAAAACCTTTACAACTTGAATTTTGATCAAGCACGAGCAACATCCTTTCCTTGA
Protein sequence (LotjaGi1g1v0436800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLHCLNTPGSLAGNCSDMTVLERQRIKLPQGNGFNCVFPSSSSSDSGSSLAEVVAQAHYIKFHMPPAGPEPSPASGPDLN SAISRTFSCPPTLVEAKANEFFSIKKESYKKRKSDKPHNPKIVAENDSKDKRIKVDSEDGESNITGKISIKDNKTATKSK NRGTCANSSNSKENEDQKLDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSL QRQVEFLSMKLATVNPALEFNSDDLFDKVVFPSCDSTFPAINLTNPATYLQFNSPPQQMVSYGGLDTGMNMNPSDVGLRR TISAPVSVPETFIDSSCYTQILPPTTWESDFQNLYNLNFDQARATSFP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 79 | 362 | 284 | 4.0E-87 | – | |
PANTHER | 79 | 362 | 284 | 4.0E-87 | ||
MobiDBLite | 108 | 141 | 34 | - | – | |
MobiDBLite | 108 | 176 | 69 | - | – | |
Gene3D | 187 | 261 | 75 | 4.7E-14 | ||
CDD | 188 | 245 | 58 | 8.02466E-11 | ||
SUPERFAMILY | 188 | 257 | 70 | 7.2E-17 | ||
ProSiteProfiles | 190 | 240 | 51 | 15.618 | ||
Pfam | 194 | 241 | 48 | 1.6E-6 | ||
SMART | 196 | 246 | 51 | 2.3E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0436800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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