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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0438300 |
| Transcript ID | LotjaGi1g1v0438300.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycogen synthase; TAIR: AT5G01220.1 sulfoquinovosyldiacylglycerol 2; Swiss-Prot: sp|Q8S4F6|SQD2_ARATH Sulfoquinovosyl transferase SQD2; TrEMBL-Plants: tr|G7L6J3|G7L6J3_MEDTR Group 1 family glycosyltransferase; Found in the gene: LotjaGi1g1v0438300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:93298121..93306360) extracted from Lotus japonicus Gifu genome v1.2.
GGCAAATGAATTTGTCGGATTCACTCTCTCTCTTATTCCAAATTCCAAAGGTTGTTATCCCTTATTTTTATTATGTAACA TGTTGAGCATCATGAACACTATCCCTATAAACCCACCTTCTTGTTCTGCATACCCTCCTAACTCTGCTAGATTTCAACAT TTTCGATCGTTCGGAGCAAAACCCATTATTCTTTCTTGCAGAGGAGCACGATTGTGCTCTTTTCCGGGGTCAAAAACTGT CAAGGGTAGAAAAAGATTGGTGCTTCATGTCACAAACGCGGCCATGGCAGAGGTTCACTCTCAATCTCATCATGAAGAGG AAGAGAAGGAAGAGGTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTTTTCTTGACTCAAGTACTGAG AACAATTCAAGGCCTCGTCGAATTGCTCTATTTGTTGAACCCTCTCCTTTTGCGTGAGTCCCTTTTGTTTTGCTTCTTGA TTTACTCTTCTTTGTGCATAGTATTGAACGCCAAGAAGTCAATACTAAAGCCAAACCAACTAGGCAATTCAATTTCTGCT TTGTTTTAGTATCAATTTCCACAGTAATTGAACTACCTTGTTGGTTTGATTTTAGTGGTAACTTATTTCATTAAATGACT GAGTTAGATTGTATTTTTATGTCAAAGGTCATAGGCCATTATTTATCTTCTTTATTAACCTTTGGTTCATCTGATGTTAT ATTTGCTTTGCATGGTGTCCATAAAATACACTTTCTATGATTAGATGCTGAAATAATAGAGAAACAATTTTTTATCTTTT TTCGATTGTTAACACTTTCAATTCAAACTGATGATAAACTGATATGATACAGCAAGTACCCAAGTATTTGACACATTTTT AAAATAAGTCTAATCATTGTTGACAACTTGACATCATAAAATACAGATGAGTTAGTGTACAATTTGGCCCTTCACAGTAG CAATGTGTGTTGATTTGGTCCTTGAAAGTGTCAATATACATCCATCCCTGAATGTGTCAATTTCTTTACAGATCCATGTT TTCGTCGTCACAAATTCATACATACATTAACTATAGTTAAATGTGTTATGAAATAGCTAATGCAAGATATTAACCACATA TGTGCATAATGATAAGTGCCATATGTCACCTACTTGACGAAAGGATGGGTTTGTAAAAGGATAAATGGATTCCTGAAGAA GTTGACAAATAGAGGGACTAATTTCAATGTAGTAATTTTAATGGCGGTTTGTTGGAATCAAGATTTTCTAGATCAGATGA TTGAGCTGACTTTCTGTTCGATTGTTATCCCTTCTATTAGTATAATCTCACTATCAGAAACATTGCGTCTTAGTTATTGA ACGATGCTGTGTTTCAAACTTGTAGATATTTTGTATCATAGCTTATGAATATGTAACTATGCATTGGTCCTAGAAATCGC ATCTAACATGTTTTCTAGTTTCTGCTGTGATAAAGTCCAAATGGGGTTGAACTACACATGTGTAATGTTAGCAGTATTAA AAATAAAAGGTATGTGTCTTCATTTTTAACAGAACATTGGAAGTGATATCTATTTTGCAGATATGTCTCAGGATACAAAA ATCGGTTTCAGAATTTTATTAAATGCCTTCGTGAAATGGGAGACGAGGTAATTTTTTATTTTTTTCTACTTCTTTTGTTT CAAGGTATGCACATTTTTATTTTCATTTATATTTGGTACTGCTTTTGTACTGTATATCCAATAACTCAGGAAATCTTGAA TAGATAGCTTCTGTGTTACATATATTGTTCCAAATCAATACTTATACTGTATTTTAGTTTCTTTGACATTGCATACAGAT AAGATAAAGAAGATAGGGAATAGATAGATATTATTAACATAGAGGAGATGAAGAATCTCTACTGAATATTGTACAAGGAA GCAGGAGTTCAAGAGCCTGTTCTCTCCACTAATTCTGGAATTCAAGAGCCAGTTCTCTCCCAACCAAATTCTAGAATTTC TGAATGTCTAAACTAACAGCCACAACTCCTATTTAATAACCAGAAATTTAATAACCACAATTCCTATTTATTTAATAACC ATAAATTTAATAACCACCCCAGACAATTTTGATAGAACATAACTAACATAAACTAATGTAACTAACCCAACAGTTTCTGA TCCGCTAACTGCTCTTAACTGCCTATAGCAATTTGCGCCTCCAGTGCTTCAGCCTATCTTGGCTGTGTGGCTGTCCTATG GGGGTTTCTCCGTATCAATACCCCCCCCCCCAAGAAGAATCACCTTGTTCTCAAGGTGGGTGAACCTACCACATTGCCTG ATTTTTCTTCTCAATCATCAAAACTTTTTTAACCATGACTGACAAGGTTTGTGGTTCGTAAAGTTTGATTTCAGTACCAT TGGCTTCCTTCAATCCATTCACAAAGATGTCCATTAAATGTGCCTCACCAATGCCCTTCAACATGCCAGCAAATTTGTCA AATTGCTTCACAAATTCTTCCGCTGACCCTTCTTGTTTCAGTGCTAACAAAGCAGCAAAGGGGTTGAGAGTGTTTGAAGA TAGAAACCTTTCTAGGATTGCTAGTTTAAAATTTTCCCAGCCAGTATGTGGATTGCCTGCTTCCCACCATTGGAACCAAG ACAAAGCTTTGCCATCCAATGCCACCGTGACTGCTTGCAATTTCTCTTCGCCGAGAATTCTTCATATTCGGAAGAATCTC TCTAGTTTGTTGACCCAACTATAAGCATCAGAATCCCCGTCAAAGAAATGAATCTCCAACTTTATCCATCGTTCAAAGTT GCTATCATTTGCAGTTTCCTCTTCATGCCTAGTGCGCCTGGATGGACCTTCTTCTTCACGACGCATAATAGTCTCCATCA TAGCCTCTAAGCGCTGAAATCGTTGTTTGGATTGTTGACGATCAATTTGCATCATCTCCAGAATTTTCTCCATTGGATCT TCTCTTGTATCAGTTCTACTCTTGCCCATGACGGAATCGTAAAATACAACAGCACCTGGATGGTGCTCTGATACCCAAAT GATCAGATAAAGAAGAATGGAATAGATAGATATTATTAATACAGTGGACATGAAGAATCTCTACCAAATATTGGACGAGG AAGCAGGAGTTCAAGAGCCTGTTCTCTCCACTAATTCTGGAATTCGAGAGCCAGTTCCCTCCCAACCAAATTCTATAATT TCTGAATATCTAAAGTCTAAACTAACAGCCACAACTCCTATTTAATAACCACCCCGAGGCAGTTTTGATAGAACATAGCT AACATATAAACTGATGTAACTAACTAATAATAGCTAACCCTACAGTTTCTAACCCACTAACTGCTCTAAATAGCCTATAG CAGTTTGCGCCTCCACTGCTTGAGCCTATCCAGGCTGTGCAGCTGTCCTATGGGGGTTTCTCCCTATCACATGCTAACTA CTTGTGTTTATTTGTGACTTATAGGTGATGGTTGTGACAACACATAAAGGAGTGCCCCAGGAGTTTTATGGAGCCAAATT AATCGGATCTTGGAGGTTGTTTCAAACCTGCTCTGTTTTACTTGCTAAGCTCATATCTCATTTTCTTCTCTTAGCTCTAC TTGTGATTCTAAATTATTGTTTTGAAATGACAGTTATTGTCTTTTAATCACAACGAGCTTAATTCTTGCTTCTTAACTGT ATACAGAGAAAAGACTAAGAGAGAGAGAGAGAGAGGGAACAGAGAGAGAGAGAGAGAGAAATATATTGTAATGGGATACA CTACTAGGTGCAGCCTCCCTCATATATATAATATTAGGTTAAGAGTAAAGTACAAGGTGTACTACAAAGTACGAATTTAA AGTACATATGGGCACGACCTATAGATTTTACGTCTAACCCTAACTCTTAATACAACCCTTATCGCTAACATTAATTGCAT TCATTGTGCATACATTTCTCAACTTTTGTTCCTGTACCTCATTCTGCCAGTATATGTTGTTCCAATTATTTTTTAATTTG ACTGGTACGTAATTATGGCATTCGTATTTTCATCATTTTGATATCATTAAGAATGTGCCAAATTAGATCTTCTCTTTAAA GGCACGATTACTGCATGAAGAAATATGATGAAATTTGTGTGTAAAATGGCGAGTGCCTGATCGAATTGATTGGGTCATGA AGGAACAAGGTTCAAGTCTACTGGTCTATTATGAATATGATACCTCAGCTGCATACATCACTGCACTTCCTCTTGGCTCC TATCATTAATGAAAAACGGCTTAGTCTTACCTTGACATTCTGTTGAATTCTCAAAACTTTCACAGCAGAGGCTTTATTAT AAATAGTTAATATAATAATTACAAGAACCACAAACATCCTAAATTCCTAATTACTGTAATTGCATGATTTAGTTAGCCTA CTTTCCATCAACTATCACTACAATCCTTTATACTAAACTTAATTTACACCAAAAACAAATTTTGAATGCAGCTTTCCTTG CCCTTTGTATCAGAAAGTACCCCTCTCCTTGGCACTTAGTCCAAGAATAATTTCAGAGGTAGCTCGGTTTAAGCCAGACA TAATACATGCATCATCTCCAGGCATTATGGTGGGTATAGAATCTTCTATCTCTTCGTCTATTACCTATTAAGGATAATGT AAGTGTAAGAACTTACTTGTCACCTGACATATCTGATGCTTGCTTAATTTCAGGTTTTTGGTGCTCTTATCATTGCAAAA CTTCTGTGTGTTCCTATTGTCATGTCGTATCATACTCACGTCCCCGTGTAAGTTGTACTGAGATTTCAGTTTTTCTTAAT ATATTTACCAGATTAGATTGTTTGGCTCTTCTGCTTACGATTATTCTGATTAGATGCTATGACGTCGGATCTGCTCTACA TTACTTTTGGCTGATCTAATTTTGCCTCCAGATACATTCCAAGATATACATTTAGTTGGCTGGTGAAACCCATGTGGTTG ATCATAAGTATGTATGCTTTCTTGGTTTTTCCAATTTGGACTCAAATGTTTTTTAACATAATATAAACTTTTGTTTCATA CAGAATTTCTTCATAGAGCAGCTGATCTGACTCTGGTGCCATCTGTTGCAATTGGGAGGGATCTTCAAGCAGCTAAAGTA ACAGCAGGTGTAGATAAAAGCTCCATATCTAGTCTTTTAGTTGTGCTTAATTTATAACAGCATCCAAATAGAATATATGC ATTTCTTACTGTGCCTTTGTCAATGTAGTAAAATTTTGGCTGACTTCTATCTCCTGTTGATATCCAGCTAACAAAATCCG TCTCTGGAGCAAGGGTGTTGATTCTGAAAGTTTCCATCCTCGATACCGCTCACATGAAATGCGATTAAGACTAAGGTTTG GACCTGTTGTCATATTTCATTGGTAAAAGTTTTGATAATAATAGGATTTCACCTTATTCTTAAACACTTGTTTATCATAC AGCAATGGTGAACCCGAGAAACCCTTGATAGTTCATGTTGGACGGCTTGGAGTTGAGAAGAGTTTAGATTTTCTCAAAAG GTAACTTCATACGAAAATTTCCTAACTTTTAGTCGTAATTGTACTCAAGATTTCGCAGTCAATCTTAAAATCCTTGATAC AAACTGCAAATAGCACAAAAAATTGCTTGTTGGTTATTGGTGTGCTGAAACTGAAAGATTGGTAAAACCTTTCGAGATAT GCTTTCAAGCAATTCACTCTAGCTTTCTTTGATGCTTCTTACTCTACCATACAATTTATCTTGCATTAGAATTTGAATAC TTGTAGCCGCCTTTGTCTTCTGAACCGCATGATCTGGAACTGGCAGGGTCATGGATAGGCTTCCTGAAGCGCGAATTGCT TTCGTTGGAGATGGACCCTACAGGTGACGTACTCTGACATGTCTGTATTATTTCTGTTCAAGATCCAAATGCGGAAATTT AATGAGTGGATAGTCACTTCGGTTCCTGAAGATATATGGTTAATCATTTTCACTCCCCTATTAGGAAATGCGAAATGATT AATAGTACGAAGACGAAATGTGCGATTGTTATGTGGCATCATAATATCCTGTTTTTCTGTTTTTAACCACTATTTTGAAT CCTTCTCTCTCCAAAATCTTTCTCCTGATTGGTTATTTCTCATTTCGTTAGTTTCGTTTTAAATTTTTTTCATACCATAT AGCATTGCTCTTAGGAAATAGGCAAAATGGTCGCTGAAAAATAAAATAAGATTAACCTTTTTAATCTCTCAAGGTTTACA TTATCATGATTTTCATCTTTCAAGGTCTTAATTGATCATTTTTCATCTTTCAGGGACTATTTTGTCAATTTTATCTTTCA AGGGCTAATTTGACTGACCCCATATCATTTAAGGGTCAAAGTGACTATTCACTCAAATTTAACTATCCCTCTCCCTGCTA AAAAAATCAGGTTCTTTCATTCCACATGTCATGGTTTTCTGTTTTGAAAATGTTGGTAGACTACCAAGAGATGTAGAGTG TTGACACCCAGAGTGAGAAAGGATGAAAAGAGAGAAGTAATGCTTGTAATATATGATGTAATGTGATAAGAAGTGAGAGA TAGAGAGAAAATTGGGTGTTTGAGAGGTAAAGTAATGTTAGTGGTCTATGTATCATAATTGTTTCTGTTTATATACAATT CTCCTTCCTCTCTACATAAATAAGCATGTTAAATACCAAAACTTCAGCAACTTATACCAATAGTATGAAGAATATGTGAG AAGAAAGAGAATAACAGAAAGCATTGGGAAAGAAAAATGTAGAAGGGAGGTAAATTAAAAGTTTCTTTTGCAAATGGCAT TCTTCCAAAAGTTAAAAATTACTCTTTGAACGCATGAGTCTTATTCCTTTTAGTAATATGATACCAGGGAGGAGCTGGAG AAAATGTTTGAAGGCATGCCTGCAGTATTCACTGGAATGTTAGGAGGGGAAGAACTCTCTCAAGCATATGCCAGTGGAGA TGTATTTGTCATGCCTTCAGAGTCAGAGACACTTGGATTTGTTGTTTTGGAGGCCATGTCTTCAGGGCTAGCCGTTGTGG CAGCGCGTGCCGGAGGCATTCCAGACATAATTCCGGCTGATCAAGAGGGCAAAACTGGTTATCTTTATCATCCTGGAGAT CTCGAAGACTTCTTGAGTAAATTGAAACCCCTTTTGCTCAGCCAAGAGCTGAGACAAACTATGGGAAAAGCTGCTCGTGA CGAGATGGAGAAGTTTGATTGGAAGGCAGCCACCCGAAAAGTTCGCAATGAACAATACAATGCCGCCATTTGGTTCTGGC GCAAGAGAAGGGCTCAACTGTCAAGACCCTTACAATGGCTGGGTAAACGTTTTTCCACATCACCCCAAGTCAATTAAATG TCTGGTTGGTTGAGTGTGATGCATTCTTTTTCTGAATAGAATGAAACATACAATATGGTGAGTTGCATCATCATGTGCAG CATACTCCTTAACGAATCTTCCTTTTAAAATTATGGTGTTCACTGTTAAGGACAGTGTCACAAGCTACATGGTGCTGCAA AGTGCTAACGGATTGATAGCAAATGCAAAGATTGGCCCAGGTTATTGAATGCTACTTGCCCTGGGCCAAGTTACTCCAAA TTAGGACAAATTGCTGTCAAATTACTTGGGGATTTTGGGGTTTAAAGGTAAAGGTTTTTTTATTTTTTTATTTTTTTTAT TACCACAATCTGAATTGAAGAGTTTGTACCAAATCATAAACCCAGGTGGCTTAGTTTAGTCGATTTTGCCTGAAGCCACT TTGATTTTGCTCATGTAAGGGGTGTAGCTTAATCTAAAGGCTTAATTGCAGTTTTGGTCCCTGATCTAACATGATTGTGC AAAAGTGATCCCACATGTTTAAAACGAGCGGTCAATGTCCCTAATGTTTGTACCGTGAGCAATTTAAGTCATTCCGTCCA CTTCTGTTAGTTGACTAACGGAATTGCTGACGTGTGCTTCATTAATTGACATGTCATGTTGTGTCACCCTGCCACATAGA TAAATAATTAAAATATTATTATGAATTCAAATTTTCCCAACCTCTTCTTCATCCCAGCAAATCATAACTGTCTTTAAATC TTCATCTTCATCTTCATCATCATCATACTCATTCATCTTGATCTTTAGAAAAAGAAAAAAACAGAAACACTAATAAATTC AAACACACCCATAATTTATGCAACTTATCCAATATCCACCATGAGTATCATTCATTCTCCATGGCTTTCCAATCATACAG
CDS sequence (LotjaGi1g1v0438300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGAGCATCATGAACACTATCCCTATAAACCCACCTTCTTGTTCTGCATACCCTCCTAACTCTGCTAGATTTCAACA TTTTCGATCGTTCGGAGCAAAACCCATTATTCTTTCTTGCAGAGGAGCACGATTGTGCTCTTTTCCGGGGTCAAAAACTG TCAAGGGTAGAAAAAGATTGGTGCTTCATGTCACAAACGCGGCCATGGCAGAGGTTCACTCTCAATCTCATCATGAAGAG GAAGAGAAGGAAGAGGTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTTTTCTTGACTCAAGTACTGA GAACAATTCAAGGCCTCGTCGAATTGCTCTATTTGTTGAACCCTCTCCTTTTGCATATGTCTCAGGATACAAAAATCGGT TTCAGAATTTTATTAAATGCCTTCGTGAAATGGGAGACGAGGTGATGGTTGTGACAACACATAAAGGAGTGCCCCAGGAG TTTTATGGAGCCAAATTAATCGGATCTTGGAGCTTTCCTTGCCCTTTGTATCAGAAAGTACCCCTCTCCTTGGCACTTAG TCCAAGAATAATTTCAGAGGTAGCTCGGTTTAAGCCAGACATAATACATGCATCATCTCCAGGCATTATGGTTTTTGGTG CTCTTATCATTGCAAAACTTCTGTGTGTTCCTATTGTCATGTCGTATCATACTCACGTCCCCGTATACATTCCAAGATAT ACATTTAGTTGGCTGGTGAAACCCATGTGGTTGATCATAAAATTTCTTCATAGAGCAGCTGATCTGACTCTGGTGCCATC TGTTGCAATTGGGAGGGATCTTCAAGCAGCTAAAGTAACAGCAGCTAACAAAATCCGTCTCTGGAGCAAGGGTGTTGATT CTGAAAGTTTCCATCCTCGATACCGCTCACATGAAATGCGATTAAGACTAAGCAATGGTGAACCCGAGAAACCCTTGATA GTTCATGTTGGACGGCTTGGAGTTGAGAAGAGTTTAGATTTTCTCAAAAGGGTCATGGATAGGCTTCCTGAAGCGCGAAT TGCTTTCGTTGGAGATGGACCCTACAGGGAGGAGCTGGAGAAAATGTTTGAAGGCATGCCTGCAGTATTCACTGGAATGT TAGGAGGGGAAGAACTCTCTCAAGCATATGCCAGTGGAGATGTATTTGTCATGCCTTCAGAGTCAGAGACACTTGGATTT GTTGTTTTGGAGGCCATGTCTTCAGGGCTAGCCGTTGTGGCAGCGCGTGCCGGAGGCATTCCAGACATAATTCCGGCTGA TCAAGAGGGCAAAACTGGTTATCTTTATCATCCTGGAGATCTCGAAGACTTCTTGAGTAAATTGAAACCCCTTTTGCTCA GCCAAGAGCTGAGACAAACTATGGGAAAAGCTGCTCGTGACGAGATGGAGAAGTTTGATTGGAAGGCAGCCACCCGAAAA GTTCGCAATGAACAATACAATGCCGCCATTTGGTTCTGGCGCAAGAGAAGGGCTCAACTGTCAAGACCCTTACAATGGCT GGGTAAACGTTTTTCCACATCACCCCAAGTCAATTAA
Protein sequence (LotjaGi1g1v0438300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSIMNTIPINPPSCSAYPPNSARFQHFRSFGAKPIILSCRGARLCSFPGSKTVKGRKRLVLHVTNAAMAEVHSQSHHEE EEKEEVPSSSSSSSSSSSSAFLDSSTENNSRPRRIALFVEPSPFAYVSGYKNRFQNFIKCLREMGDEVMVVTTHKGVPQE FYGAKLIGSWSFPCPLYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRY TFSWLVKPMWLIIKFLHRAADLTLVPSVAIGRDLQAAKVTAANKIRLWSKGVDSESFHPRYRSHEMRLRLSNGEPEKPLI VHVGRLGVEKSLDFLKRVMDRLPEARIAFVGDGPYREELEKMFEGMPAVFTGMLGGEELSQAYASGDVFVMPSESETLGF VVLEAMSSGLAVVAARAGGIPDIIPADQEGKTGYLYHPGDLEDFLSKLKPLLLSQELRQTMGKAARDEMEKFDWKAATRK VRNEQYNAAIWFWRKRRAQLSRPLQWLGKRFSTSPQVN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 518 | 516 | 0.0 | – | |
| PANTHER | 3 | 518 | 516 | 0.0 | – | |
| MobiDBLite | 71 | 107 | 37 | - | – | |
| MobiDBLite | 73 | 87 | 15 | - | – | |
| MobiDBLite | 88 | 107 | 20 | - | – | |
| CDD | 114 | 486 | 373 | 1.58538E-138 | – | |
| SUPERFAMILY | 115 | 482 | 368 | 2.04E-77 | – | |
| Gene3D | 129 | 481 | 353 | 9.3E-63 | – | |
| Pfam | 132 | 295 | 164 | 1.5E-21 | ||
| Gene3D | 292 | 472 | 181 | 9.3E-63 | – | |
| Pfam | 315 | 467 | 153 | 2.2E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0438300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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