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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0439800 |
| Transcript ID | LotjaGi1g1v0439800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT2G17030.1 F-box SKIP23-like protein (DUF295); Swiss-Prot: sp|Q3EBZ2|SKI23_ARATH F-box protein SKIP23; TrEMBL-Plants: tr|G7LIM0|G7LIM0_MEDTR F-box protein; Found in the gene: LotjaGi1g1v0439800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:93582082..93583550) extracted from Lotus japonicus Gifu genome v1.2.
CGAAAATTCATTGAATGTGAGATATGAAATACAAGAGTTCCGATGATGAAGTTGAGACGTTAAGCGATTAATGATCGTGT TGTAATGGAAAAAGGACGGAGAGTAGAATGGTTAAATCTTCCTCCAGAGTTGTGGACAATGATAGCCAAACATCTAATCA CCCTAGACAACACTACATTTGAAATTCGCAGATTTCGAAGTATATGTAATACATGGCGCTCCGCTCACCCTCTCCCGGAA CACACGCCATTTGCCATTCCTCTCAGAAGATCTTGCCTTCTCCAAAAGAAAATATATGGTCTAAAACCATTATCACATGT ACCTCACATTGATCAAGACCCGTCTATTTCTTCTTCAAAAGGGTGGATTATAATGTCGGAATCCGTGTCACTTCCTCTCT TAAATCCTTTCACCTGCTCTCCTATCTCTAACACCCCTCAGATTTTCTTAAGTGACACTTCGCCAAGGGTGTTGGATATC ATGAACTTCAAGGCTGTGGAGTTGATTGAAGTATTTAATCTCTCTAGTAATTATAACGTTCAAAAAGCGGTATTGTTCCC TAGTTTTCATGTGGAGGGTCGCATGGTGTTTGCTTTATTTCATGATAGAAAGTTGTGTGTTCGCAAGACTGGAGATGAGA AGTGGACCAGGATGAAACTGGGTTGTTATTCCTGCCATGATATAATCATTCACAAGGGACAACTTTATGTTATAAATGAC TTGGGAACAATTTCTTGGATGAATCCTTCATCCTTGAAGTTGGTATAGTTTACACAGCCATTGTGGGGGTGGCCTAATGG CAAGGAGAAGAAAATGGTGGAGTGTGGTGGAAGTCTCTATGTGGTTGATATGCCTATTAAAGCGTTCTCTTTGAACGAGG AAGTTGATATTAAAGTTTACAAGGTCAATGAAGAATCAGGTAGATGGGAAGTTGTGAAAAATTTGGGTGATGTTGTGATT GTTTTGGGTAATAAGTCGAATTTTTCTCTGTCAGCTCAAGATTACCATGGTGCTGAAGGGAATTGCATCTACTTTTCTTA CACTAATTCTCGTGGAGTCAGGATATTCTGTTTCAGCTTAAAGGATTACATCTTAAAAACTCCTAATCCTTTCTGGTCTT GTCCCAGTTTGTTCAACCATTGAAGACTTGATATATTAGGTTTCTTTAAAAGTTTGAATATGCGTAATTCCTTGTTGATT GATCGCATCGCCCCATCTGAAGCATTGGAAGTAATTATGGAACTAAATTGCTAGTGTTGGGGATTGTATATTTGTCAAGG ACAGTTGAAAATGATTCTCTCTTACTATACCTGTTCTAAACATTGTTCATCTAGTTGTCAGCACTGTTCGTTAACTTATA ATTACAAGGCAAAATTGCTCATGCTAAGAGAAAGAAATTAAATATGTAAGCCAGCTTGATTCAGGCAAATAGGTACTTTT TTCTTTTCAATTTCCTCCTCTGACTTGGG
CDS sequence (LotjaGi1g1v0439800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAAAGGACGGAGAGTAGAATGGTTAAATCTTCCTCCAGAGTTGTGGACAATGATAGCCAAACATCTAATCACCCT AGACAACACTACATTTGAAATTCGCAGATTTCGAAGTATATGTAATACATGGCGCTCCGCTCACCCTCTCCCGGAACACA CGCCATTTGCCATTCCTCTCAGAAGATCTTGCCTTCTCCAAAAGAAAATATATGGTCTAAAACCATTATCACATGTACCT CACATTGATCAAGACCCGTCTATTTCTTCTTCAAAAGGGTGGATTATAATGTCGGAATCCGTGTCACTTCCTCTCTTAAA TCCTTTCACCTGCTCTCCTATCTCTAACACCCCTCAGATTTTCTTAAGTGACACTTCGCCAAGGGTGTTGGATATCATGA ACTTCAAGGCTGTGGAGTTGATTGAAGTATTTAATCTCTCTAGTAATTATAACGTTCAAAAAGCGGTATTGTTCCCTAGT TTTCATGTGGAGGGTCGCATGGTGTTTGCTTTATTTCATGATAGAAAGTTGTGTGTTCGCAAGACTGGAGATGAGAAGTG GACCAGGATGAAACTGGGTTGTTATTCCTGCCATGATATAATCATTCACAAGGGACAACTTTATGTTATAAATGACTTGG GAACAATTTCTTGGATGAATCCTTCATCCTTGAAGTTGGTATAG
Protein sequence (LotjaGi1g1v0439800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKGRRVEWLNLPPELWTMIAKHLITLDNTTFEIRRFRSICNTWRSAHPLPEHTPFAIPLRRSCLLQKKIYGLKPLSHVP HIDQDPSISSSKGWIIMSESVSLPLLNPFTCSPISNTPQIFLSDTSPRVLDIMNFKAVELIEVFNLSSNYNVQKAVLFPS FHVEGRMVFALFHDRKLCVRKTGDEKWTRMKLGCYSCHDIIIHKGQLYVINDLGTISWMNPSSLKLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 227 | 221 | 4.7E-47 | – | |
| PANTHER | 7 | 227 | 221 | 4.7E-47 | – | |
| Pfam | 9 | 46 | 38 | 6.4E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0439800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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