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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0439900 |
| Transcript ID | LotjaGi1g1v0439900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT1G65770.1 ascorbic acid mannose pathway regulator 1; Swiss-Prot: sp|Q9SHX9|FB72_ARATH Putative F-box protein At1g65770; TrEMBL-Plants: tr|G7LIM0|G7LIM0_MEDTR F-box protein; Found in the gene: LotjaGi1g1v0439900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:93600704..93602122) extracted from Lotus japonicus Gifu genome v1.2.
CGGATAGTAGAATGGTTAAATCTTCCTCCAGAGTTGTGGACAATGATAGCCAAACATCTAATCACCCTAGACAACACTAC ATTTGAAATTCGCAGATTTCGAAGTATATGTAATACATGGCGCTCCGCTCACCCTCTCCCGGAACACACGCCATTTGCCA TTCCTCTCGGAAGATCTTGCCTTCTCCAAAAGAAAATATATGGTCTAAAACCATTATCACATGAATCTCACATTGATCAA GACCCGTCTATTTCTTCTTCAAAAGGGTGGATAATAATGTCGGAATCCGTGCCACTTCCTCTCTTAAATCCTTTCACCTG CTCTCCTATCTCTAACACCCCTCAGATTTTCTCAAGTGACACTTCGCCAAGGGTGTTGGATATCATGAACTTCAAGGCTG TGGAGTTGTTTGAAGTATTTAATCTCTCTGGTAATTATGACTATGACGTTCAAAAAGCGGTATTGTTCCCTAGTTTTCAT GTGGAGGGTCGCATGGTGTTTGCTTTATTTCGTGGTAGAAAGTTGTGTGTTCGCAAGACTGGAGATATGAAGTGGACCAT GATGAAATTGGGTTGTTATTGCTGCCATGATATAATCATTCACAAGGGGAAACTTTATGTTATAAATGACTTGGGAACAA TTTCTTGGATGAATCCTTCATCCTTGAAGTTGGTACAGTTTACACAGCCATTGTGGGGGTGGCCTAATGGCAAGGAGAAG AAAATGGTGGAGTGTGGTGGAAGTCTCTATGTGGTTGATATGCCTATTAAAGCGTTCTCTTTGAACGAGGAAGTTGATAT TAAAGTTTACAAGGTCAATGAAGAATCAGGTAGATGGGAAGTTGTGAAAAATTTGGGTGATGTTGTGATTGTTTTGGGTA ATAAGTCGAATTTTTCTCTGTCAGCTCAAGATTACCATGGTGCTGAAGGGAATTGCATCTACTTTTCTTACACTAATTCT CGTGGAGTCAGGATATTCTGTTTCAGCTTAAAGGATTACATCTTAAAAACTCCTAATCCTTTCTGGCCTTGTCCCAGTTT GTTCAGCCATTGAAGACTTGATATATTAGGTTTCTTTAAAAGTTTGAATATGCATAGTTCCTTGTTGATTGATCGCATCG CCCCATCTGAAGCATTGGAAGTAATTATGGAACTAAATTGCTAGTGTTGGGGATTGTAGATTTGTCAAGGACATTTGAAA AGGATTCTTTCTTACTATACCTGTTCTAAACATTGTTCATCTAGTTGTCAGCACTGTTCGTTAACTTATACTTACAAGGC AAAATTGCTAATGCTTTAAATAAGAGAAAGAAATTAAATATGTAAGCCAGCTCGATTGTGAAGAAGTAGTTGTTTTGTGC TCTTTTATCTCTTCTTTTAGGGGCCCGGCCTCGCCTTTGCACCAATAAAAAATGTTGAT
CDS sequence (LotjaGi1g1v0439900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAGCCAAACATCTAATCACCCTAGACAACACTACATTTGAAATTCGCAGATTTCGAAGTATATGTAATACATGGCG CTCCGCTCACCCTCTCCCGGAACACACGCCATTTGCCATTCCTCTCGGAAGATCTTGCCTTCTCCAAAAGAAAATATATG GTCTAAAACCATTATCACATGAATCTCACATTGATCAAGACCCGTCTATTTCTTCTTCAAAAGGGTGGATAATAATGTCG GAATCCGTGCCACTTCCTCTCTTAAATCCTTTCACCTGCTCTCCTATCTCTAACACCCCTCAGATTTTCTCAAGTGACAC TTCGCCAAGGGTGTTGGATATCATGAACTTCAAGGCTGTGGAGTTGTTTGAAGTATTTAATCTCTCTGGTAATTATGACT ATGACGTTCAAAAAGCGGTATTGTTCCCTAGTTTTCATGTGGAGGGTCGCATGGTGTTTGCTTTATTTCGTGGTAGAAAG TTGTGTGTTCGCAAGACTGGAGATATGAAGTGGACCATGATGAAATTGGGTTGTTATTGCTGCCATGATATAATCATTCA CAAGGGGAAACTTTATGTTATAAATGACTTGGGAACAATTTCTTGGATGAATCCTTCATCCTTGAAGTTGGTACAGTTTA CACAGCCATTGTGGGGGTGGCCTAATGGCAAGGAGAAGAAAATGGTGGAGTGTGGTGGAAGTCTCTATGTGGTTGATATG CCTATTAAAGCGTTCTCTTTGAACGAGGAAGTTGATATTAAAGTTTACAAGGTCAATGAAGAATCAGGTAGATGGGAAGT TGTGAAAAATTTGGGTGATGTTGTGATTGTTTTGGGTAATAAGTCGAATTTTTCTCTGTCAGCTCAAGATTACCATGGTG CTGAAGGGAATTGCATCTACTTTTCTTACACTAATTCTCGTGGAGTCAGGATATTCTGTTTCAGCTTAAAGGATTACATC TTAAAAACTCCTAATCCTTTCTGGCCTTGTCCCAGTTTGTTCAGCCATTGA
Protein sequence (LotjaGi1g1v0439900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIAKHLITLDNTTFEIRRFRSICNTWRSAHPLPEHTPFAIPLGRSCLLQKKIYGLKPLSHESHIDQDPSISSSKGWIIMS ESVPLPLLNPFTCSPISNTPQIFSSDTSPRVLDIMNFKAVELFEVFNLSGNYDYDVQKAVLFPSFHVEGRMVFALFRGRK LCVRKTGDMKWTMMKLGCYCCHDIIIHKGKLYVINDLGTISWMNPSSLKLVQFTQPLWGWPNGKEKKMVECGGSLYVVDM PIKAFSLNEEVDIKVYKVNEESGRWEVVKNLGDVVIVLGNKSNFSLSAQDYHGAEGNCIYFSYTNSRGVRIFCFSLKDYI LKTPNPFWPCPSLFSH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 335 | 333 | 1.4E-79 | – | |
| PANTHER | 3 | 335 | 333 | 1.4E-79 | – | |
| SUPERFAMILY | 105 | 316 | 212 | 1.31E-6 | – | |
| Pfam | 268 | 307 | 40 | 3.4E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0439900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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