Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0444100 |
| Transcript ID | LotjaGi1g1v0444100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT5G01305.1 transcription factor bHLH140-like protein; Swiss-Prot: sp|Q9M041|BH140_ARATH Transcription factor bHLH140; TrEMBL-Plants: tr|V7B5U7|V7B5U7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0444100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:94173368..94174209) extracted from Lotus japonicus Gifu genome v1.2.
CTACTATATAAATATTCAAGGCTAGCTACTTGAAAACTTCCATTAGGCTCTTTACAGTAGTACATTTCTCTTAGCCATAG CACATGGAGACTAGTCCTGCTTGTAAACCTACTATTTCTGCAGGGTCATCTTCCAAGAGCAAGGAGAAGAAGGGTGGTGT GAAGAAAACAACCAAAAGGGAAGTGAAGCTTTCCACTGACCCACAAAGCGTGGCGGCTAGAGAGAGAAGGCACAGAATAA GTGACAGGTTCAAGGTCCTGCAGAGCATGGTCCCTGGAGGGAGCAAGATGGACACAGTTTCCATGTTGGAGGAAGCCATT CACTATGTCAAGTTCCTCAAGACTCAGATTTGGCTTCTTCACCAAACCATGATTAACTTTGTAGATGATCATGTCTCATC ATCACCCGCCATAATGTCCTTTCCTGGGTGGGAGCATTTTCCAAATGAACACAACATTTCCCTTCAGCAAAATCCTTCAC TTTCAGTAGATTTGGATTCTATGCAGAGTTTGCCACAGCTACCCCTTGATCAGTTCTTCTTCCAAGGTGAAGAAGATGCC ACTATGAAATATTCGCCAGCTTATAATTAGTGTCTTTTTGCTCTCTGTGCTAACATAGCTGGTAACATAAATTAGCTTTG AACTTGTAATGGGTTAGCTAATATGTCTTATGTGAGTAATTGTGTGATATTAATGTAGCAAAAGCTTAATCAGTGTAGAA CCTTCATGCAATTGTAAAATATTTGTGTCTTTTTCTATCACAAGCACTACCTTATTCTTAATCAGTAGCTTGATGAAATG TGGTCTTGGTTAATTGCATTGATGTCTATGTAGTAAAAAGCT
CDS sequence (LotjaGi1g1v0444100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGACTAGTCCTGCTTGTAAACCTACTATTTCTGCAGGGTCATCTTCCAAGAGCAAGGAGAAGAAGGGTGGTGTGAA GAAAACAACCAAAAGGGAAGTGAAGCTTTCCACTGACCCACAAAGCGTGGCGGCTAGAGAGAGAAGGCACAGAATAAGTG ACAGGTTCAAGGTCCTGCAGAGCATGGTCCCTGGAGGGAGCAAGATGGACACAGTTTCCATGTTGGAGGAAGCCATTCAC TATGTCAAGTTCCTCAAGACTCAGATTTGGCTTCTTCACCAAACCATGATTAACTTTGTAGATGATCATGTCTCATCATC ACCCGCCATAATGTCCTTTCCTGGGTGGGAGCATTTTCCAAATGAACACAACATTTCCCTTCAGCAAAATCCTTCACTTT CAGTAGATTTGGATTCTATGCAGAGTTTGCCACAGCTACCCCTTGATCAGTTCTTCTTCCAAGGTGAAGAAGATGCCACT ATGAAATATTCGCCAGCTTATAATTAG
Protein sequence (LotjaGi1g1v0444100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
METSPACKPTISAGSSSKSKEKKGGVKKTTKREVKLSTDPQSVAARERRHRISDRFKVLQSMVPGGSKMDTVSMLEEAIH YVKFLKTQIWLLHQTMINFVDDHVSSSPAIMSFPGWEHFPNEHNISLQQNPSLSVDLDSMQSLPQLPLDQFFFQGEEDAT MKYSPAYN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 19 | 19 | - | – | |
| MobiDBLite | 1 | 46 | 46 | - | – | |
| PANTHER | 3 | 135 | 133 | 7.5E-55 | – | |
| PANTHER | 3 | 135 | 133 | 7.5E-55 | – | |
| MobiDBLite | 20 | 35 | 16 | - | – | |
| Gene3D | 27 | 93 | 67 | 2.8E-10 | ||
| ProSiteProfiles | 36 | 85 | 50 | 15.205 | ||
| SUPERFAMILY | 41 | 94 | 54 | 9.68E-14 | ||
| SMART | 42 | 91 | 50 | 2.4E-12 | ||
| CDD | 42 | 89 | 48 | 7.41235E-14 | ||
| Pfam | 46 | 85 | 40 | 4.1E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0444100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…