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LotjaGi1g1v0445600.1

Overview

Field Value
Gene ID LotjaGi1g1v0445600
Transcript ID LotjaGi1g1v0445600.1
Lotus japonicus genome version Gifu v1.2
Description DUF538 family protein (Protein of unknown function, DUF538); TAIR: AT3G08890.1 hypothetical protein (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610; TrEMBL-Plants: tr|V7B2U6|V7B2U6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0445600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:94454667..94459387) extracted from Lotus japonicus Gifu genome v1.2.

GTTAATTCAAAACGTGCAAAACTGTAAATTTGTATAATTATTATTATTATATTATATTATATAAAAAAAACCACAATAGC GTGGCCAGAAAGAATTGGTAGTATGCTGCATATAGAAACAAATAGCACCGTGGCGACTTGACTTGCAGAATTTAGTAGTA GTATTATATTTACGCTTCAACGAGTTTGAGGAATAGAGCGAATAATGGATGAGCTATTGAACAAGGTTGGCTCATACTGG TTCAGCAAGAAGGCCAACAAGGAGCTTAACTCTGTCGGTGATGATATCAACGTACGTACTACTTCATCCTTTTTATGTTT TTTCCCTTTTTTATTCGCTCAAGTTCAGATTTTTCCTTTTATTTTTCAATCTCAATGGTTGAACCCTACCTACAATTTTA GGTATTATATTATATTATATATTTTTGCCTCATGGAAAGGAAAACTATGGAATTGTCATGTCTTTCTGGGTTTTCTTGTT TTGGGTCAAGGGTACAAGTTTATGTATAATTGTTGATTGTTCATGTGAAAGAAAATCCCACATGCATGCCCTTTTATGAT CCTCCCAGCCCCAGGATATCAGTTTTACATGGTAGAAATGTTGCAGAAAGGGGTGTAAAATCTTACTTTGCTTTGTCCCC TGCATTTACAATTCAAGATTTGTTGGGATGGGGTTCAGGTGAGGTCCTAGGGAGACCGTTGGATCTCAGAGAGATTCGTC CTTGCCTGTTCGCTTGTAAGGGTGGGGATACGTTGTGAACCTCGTCCCAATCTCCCTTGAGCTCTGTGTTCTGACCCTCG GAGATTCAGACAGAAAAACTCTTGATCTTTACATTAGTGATGGCAGTCATTGGAGGGATGGGACCCTGACCATTGGTTGG GTAGTACATCATTCCTGGTTTGGATCTCAGACCTGGGCCTTATGCCCATGTTGGATCATGTAGCATATTAGCAGTAGGCT TTGGTTTTGAATCGGAAATACTGGATTGAAATTGCAAAGAGATACTGACTATAAATGTGGATGTAATGTTCTATATTTGA TAAGATATTTTGCTTCCGCTGTCATATATTGGAGTTTTAAATTGTAAATACTACAAGTTTATCAACAGCTCTGAGATTTT GCATTTGACAAAATTTTAGTGCATGATTTAGGTTTTGATGAATAGAACAACTTATAGGCTATAAGCCTAAGTATAAGTGT GTGTGAAACATTAGGTACTGAGCTCAGGATTATGGTTTCATTTTCAGCACAGGAAATTAATCAAATGATTCTTTTATAGT GACATGAGATTATATAAAATTGGACCTCAAAGTATGCTAGATTGTTAGGAGTAACCAAGGAACAGGTAGTATGAAAGTCT TGTTAGGAAATTTTAGCTAGGACTGGACAGAGGAAGGTGGAGAAGCTCTCTAACTTGTGTGTATGATTTGATACCATTTG TGTAAGACAATGTTTCTACAATCAATTTGAGCAACTTTTGCTTAATATTTGTGTTTAAGCAGAGAAATGTATGCATTTAC CATGCTGTTAGTTTTCTGTGAGCATCTAGTAGATAACATTATAATTTATCTAATGCATACTCTTAAACTCAGATTTGGTG CTGAAACTGAAAGGTGTTGCTTATTTTTCTTTACTGAAAATTTGAAGGTTTTCACTTAATATAGGCAAATGATTTGCTTG TTAATGACGTATATAAGTATATTTGACCTAGTTCAGTACTCTGTAGTTCTTCCTGCTCTGGATATAGACCGTAGAAGATT TCTTTAGTATGAACATTAGGTAAGGTGCAATGTTCAAGATTGATTTATTCACTTTCTGATAATGGAAATCATTTGAGTAC TGGGACTGTACTGTTTCCACTAGATTATACATGTTGAAATGAAAGAGAAATTTTATTTCTTGTTTTATGTATTTACCACT TTTATTTTTGGTTTTTAGTCACTTTCAACAAGTATTGAAGGAGGAACTAAATGGTTGGTCAACAAATTAAAAGGTTTGTA TCTCTAACATTTCTTTGTGTTGCTCATACATTTGATGTACAAATCTGCGCTGTTAAATCTGTGCTGTAGTGGGGACTTCC TTTAATTGCAACTCATAATCTCAAATAAATAAATAAATGCTTTGAACTTTCATTCCTTACTTGGATTATAGTCAAGGCCA TTAAATGTTTTAACCAACCTTATATGTAAATGGTTTCCATCTTACCAGCATTTAGGGGATCTCCATGACGAGTGGGCTAG ACTACAACTTTGAAATTAATATCTGGAATCACTATAACTGTGTATTCTATATTTTTTTTCTCTTTCTTTCTTTTTCTTTG ATGTGGAATGTCTGGTGTAAACATGGACTTGTATATAGCAATGCTTCCCAGAACCATTATTCTTTTGCTGTTAAGAGCAA TTAGATACACACTGCAAAGGATTTTGAAATTCTTTAAACTAGAAGCTAATAAGATGAGAGTTTGTTACAACAAAGAGAAA TTTAAAATTGTGTTTCTAGTTTGTCATAAATATGTTTTTCATCCCTGTAAAATGTGTAATTATTGGTTTAGTCCCTGCAA AAATTGTATACATTTTTACTCCCAAAAATACAAAAGTCATGTGGTTTTCCTGGTTTCTAGTCCTCAAAAAACACATAAGT TTTGTATTTTATTAGTGAAAATTAGAAATAAAAATAAAAAATTTCAAATAGAGTGTCTATAACAACTCACAAAAACATGA TAAATCCTTTCAAAGATAAGTTCTCCATCTATTTTCTTTTTGACACTTCTAATTGACGAATCAAATCAATTTTACTCCTT AATCATGTCTCCTCTCTTTTTGACACTTCACAGGAAAGATGCAAAAGCCATTAATAGAGTTGCTAAAGGAGCATGATCTA CCGATAGGCATTTTTCCTCGTGACGCAACCAACTATGAATTTAACGAACAAACAGGGAAGCTTGTTGTATACATTCCTCA AGTGTGTGAAGTAGGATACAGGGACTCATCAGTCTTGCGTTTCTCCACCAGTGTGTCTGGTTATTTAGAGAAAGGCAAGT TAACAGACATTGAGGGAATGAAAACCAAAGTGCTGATCTGGGCAAAAGTGACCACCATTACATCTGAGGGATCCAAGCTC CATTTCTCGGCTGGAATGAAGAAAACGAGGAGAAAGGAGGCATATGAGGTTTCTAGAGATGGTGTAAGCGTAGATAAATT CTAATATATTATCAGTGGTTTGTAGCATGCAGTTATTTGTCTGTTCTTGTGGGCTGTTATGTTCTTTAGATGTCAATGTT GTGATTTGGTTGAACTCCTCTTAGGTCCTTGTTGATTAATAGGATGTTTAGATCAGCTTATTTATTTTAGAATCAATTCT GACACTAAAAAGCTACTAACATAAGTTTATGCTTAATTAATTTTGACTCTAGAATTAATTGCTATATTGCATGTTTGGAA ACTCGGTAGAAAACCATAGTTTTCAGATTCTTAGATGATGTGAGTTAGTTTTAAGTTGTATAGGTAAAGTGAGTTAGTTG GGTTTGTTATTTGGTTACTTGTTGAGTTACTAGCTTGTATATATAATAGACATTCTATAGTAAATTCAACTAAGCTTTTA GTTCACTTTCATTAACAGTGGAAATATAGTGGACAGAAACAAAAATTAACGGACTATCAACATTGGTTCTATCCATCATG GATTTTGTTTCATTGTGGTTTTTCATTGAGTTTCAAACATGCACTAATTAGTTTCAGTTTTTCTCTATTGGGGCACACTA TGTTTTTCTTATGATACCACAGCTTTATTTGATACTCGAAACTAAATTGGCAATTCAACAACATAACTGTCTAGTATTCT TTTGATTTCACTCTAGGGAAAGACATCAGAAACAGCCACTGTCACATGTTTTACCTAAAACTTAGACTTTACCACCTAAT CTCAAGGTTATTCCTTTACCCACCTTCAATAATTTCAATTTTTTTTGCAAATTTTTTACAAGCCATTATATCTACCCTCT CCCTCAACTACCATGGCTCCTCCTTTCTCACCCACCCCGACCAAGATGAAGAACAAACCCAGAAATAACAACAAAAAACA ACAAAAACCCCATATCAACATCCTGGAAAACCTACCACACCACTCCATGTCTCCCTTCGATCTACCTCTCCCAAAAGCCA AACTTGAAAGCTCAAAGTAATGCAGCAAGAGCATGAAACAACTTCTTACTAGAAGCATCATAAGTTTCAAAACCATTCTC CCATAAATCCGTTAGGTCTTTAAAAAGAGGTTCCAATTAGATGTTAATACTGTTTTCCGGGAAGATGGACTAGGAAAAAG TATTGACAGCTCAAATAAGGTTGCTTCATGCATTCCTATGAACTACTGGCCAAATATTGTGCCTACTACTTTTTCTTTCT TTCTTTTAAATAGACTAAATCTATCACTTGCTAACCCATACCTTACATTTCCAGGACAAGTTACAAAATTAACATGCAAA GAATCAAAAAAATTTCAAGTGAACTGTTGGATATCTAAAATTTCCACCTTTTTTTCACCAGACTCATGCGATTTTATTGA ATCAAACTGAATTTTCTACATATAGACTCTCACTAATGCTAATATTTGTTGAACTTTTTTTGGACAATAGCTGATTTGTT GGTTTAAATGGGCCGAACATCAGATGGATTTATAATTTCACTCTATCTACTCGGCCCATTCAATTTTATTTGAAATGTGG C
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0445600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATGAGCTATTGAACAAGGTTGGCTCATACTGGTTCAGCAAGAAGGCCAACAAGGAGCTTAACTCTGTCGGTGATGA TATCAACTCACTTTCAACAAGTATTGAAGGAGGAACTAAATGGTTGGTCAACAAATTAAAAGGAAAGATGCAAAAGCCAT TAATAGAGTTGCTAAAGGAGCATGATCTACCGATAGGCATTTTTCCTCGTGACGCAACCAACTATGAATTTAACGAACAA ACAGGGAAGCTTGTTGTATACATTCCTCAAGTGTGTGAAGTAGGATACAGGGACTCATCAGTCTTGCGTTTCTCCACCAG TGTGTCTGGTTATTTAGAGAAAGGCAAGTTAACAGACATTGAGGGAATGAAAACCAAAGTGCTGATCTGGGCAAAAGTGA CCACCATTACATCTGAGGGATCCAAGCTCCATTTCTCGGCTGGAATGAAGAAAACGAGGAGAAAGGAGGCATATGAGGTT TCTAGAGATGGTGTAAGCGTAGATAAATTCTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0445600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDELLNKVGSYWFSKKANKELNSVGDDINSLSTSIEGGTKWLVNKLKGKMQKPLIELLKEHDLPIGIFPRDATNYEFNEQ TGKLVVYIPQVCEVGYRDSSVLRFSTSVSGYLEKGKLTDIEGMKTKVLIWAKVTTITSEGSKLHFSAGMKKTRRKEAYEV SRDGVSVDKF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31676:SF102
1 170 170 1.6E-92 –
PANTHER
PTHR31676
1 170 170 1.6E-92
IPR007493
SUPERFAMILY
SSF141562
3 170 168 9.15E-51
IPR036758
Gene3D
G3DSA:2.30.240.10
32 170 139 9.5E-58
IPR036758
Pfam
PF04398
55 159 105 5.9E-28
IPR007493

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0445600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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