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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR007493
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 43 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.449s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0080889.1
n.a. Uncharacterized protein TCM_026789 [Theobroma cacao] gi|508719798|gb|EOY11695.1| chr0 31471185 31471931 -
4 domain predictions
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Lj0g3v0130939.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508781256|gb|EOY28512.1| chr0 59500017 59501471 +
4 domain predictions
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Lj0g3v0205919.1
n.a. Uncharacterized protein TCM_021424 [Theobroma cacao] gi|508714903|gb|EOY06800.1| chr0 102522473 102523094 +
4 domain predictions
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Lj0g3v0217429.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508720773|gb|EOY12670.1| chr0 110701656 110703449 -
4 domain predictions
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Lj0g3v0330409.1
n.a. Eukaryotic translation initiation factor 3 subunit A [Medicago truncatula] gi|357505083|ref|XP_003622830.1| chr0 172678345 172678781 +
4 domain predictions
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Lj1g3v2374700.1
n.a. Uncharacterized protein TCM_021606 [Theobroma cacao] gi|508715195|gb|EOY07092.1| chr1 28023404 28025033 -
4 domain predictions
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Lj1g3v2374700.2
n.a. Uncharacterized protein TCM_021606 [Theobroma cacao] gi|508715195|gb|EOY07092.1| chr1 28023404 28026688 -
4 domain predictions
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Lj1g3v2838130.1
n.a. Uncharacterized protein TCM_002665 [Theobroma cacao] gi|508701851|gb|EOX93747.1| chr1 32281354 32283179 -
4 domain predictions
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Lj1g3v3597090.1
n.a. Eukaryotic translation initiation factor 3 subunit A [Medicago truncatula] gi|357505083|ref|XP_003622830.1| chr1 41339939 41340375 -
4 domain predictions
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Lj1g3v4790680.1
n.a. Uncharacterized protein TCM_026789 [Theobroma cacao] gi|508719798|gb|EOY11695.1| chr1 57699640 57700619 +
4 domain predictions
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Lj2g3v0593030.1
n.a. Uncharacterized protein TCM_004685 [Theobroma cacao] gi|508703228|gb|EOX95124.1| chr2 8004305 8005205 -
4 domain predictions
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Lj2g3v0766500.1
n.a. Uncharacterized protein TCM_037923 [Theobroma cacao] gi|508783608|gb|EOY30864.1| chr2 11950767 11955399 -
4 domain predictions
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Lj4g3v2253560.1
n.a. Uncharacterized protein TCM_021424 [Theobroma cacao] gi|508714903|gb|EOY06800.1| chr4 31268937 31269756 -
4 domain predictions
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Lj4g3v2603870.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508785080|gb|EOY32336.1| chr4 34958544 34961261 -
4 domain predictions
 –
Lj4g3v2603880.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508785084|gb|EOY32340.1| chr4 34962502 34963219 +
4 domain predictions
 –
Lj5g3v1529950.1
n.a. Uncharacterized protein TCM_026789 [Theobroma cacao] gi|508719798|gb|EOY11695.1| chr5 22236797 22237798 +
4 domain predictions
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Lj5g3v1529960.1
n.a. Uncharacterized protein TCM_026789 [Theobroma cacao] gi|508719798|gb|EOY11695.1| chr5 22236797 22237909 +
4 domain predictions
 –
Lj5g3v1604490.1
n.a. Uncharacterized protein TCM_004685 [Theobroma cacao] gi|508703228|gb|EOX95124.1| chr5 23421075 23422291 +
4 domain predictions
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Lj5g3v1605670.1
n.a. Uncharacterized protein TCM_004683 [Theobroma cacao] gi|508703226|gb|EOX95122.1| chr5 23442775 23443916 +
4 domain predictions
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Lj5g3v1605680.1
n.a. Uncharacterized protein TCM_004683 [Theobroma cacao] gi|508703226|gb|EOX95122.1| chr5 23442923 23443419 +
4 domain predictions
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Lj6g3v1126300.1
n.a. Uncharacterized protein TCM_015652 [Theobroma cacao] gi|508776642|gb|EOY23898.1| chr6 13855190 13856339 +
4 domain predictions
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Lj6g3v1944140.1
n.a. Uncharacterized protein TCM_029489 [Theobroma cacao] gi|508780451|gb|EOY27707.1| chr6 22065108 22065633 -
4 domain predictions
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Lj6g3v2134270.1
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508781257|gb|EOY28513.1| chr6 24839712 24840988 +
4 domain predictions
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LotjaGi1g1v0445600.1
n.a. DUF538 family protein (Protein of unknown function, DUF538); TAIR: AT3G08890.1 hypothetical protein (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610; TrEMBL-Plants: tr|V7B2U6|V7B2U6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0445600 LjG1.1_chr1 94454667 94459387 -
3 domain predictions
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LotjaGi1g1v0486700.1
n.a. transmembrane protein, putative (Protein of unknown function, DUF538); TAIR: AT3G07470.1 transmembrane protein, putative (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9BZH6|WDR11_HUMAN WD repeat-containing protein 11; TrEMBL-Plants: tr|G7KRK5|G7KRK5_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi1g1v0486700 LjG1.1_chr1 99983386 99986720 -
3 domain predictions
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LotjaGi1g1v0595300.1
n.a. transmembrane protein, putative (Protein of unknown function, DUF538); TAIR: AT3G07470.1 transmembrane protein, putative (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610; TrEMBL-Plants: tr|I3T1S2|I3T1S2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0595300 LjG1.1_chr1 113492635 113495650 -
3 domain predictions
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LotjaGi1g1v0748500.1
n.a. plant/protein (Protein of unknown function, DUF538); TAIR: AT1G09310.1 plant/protein (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610; TrEMBL-Plants: tr|I3T5T3|I3T5T3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0748500 LjG1.1_chr1 132104689 132110509 +
3 domain predictions
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LotjaGi2g1v0212800.1
n.a. DUF538 family protein (Protein of unknown function, DUF538); TAIR: AT5G19590.1 DUF538 family protein (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610; TrEMBL-Plants: tr|I3SSF7|I3SSF7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0212800 LjG1.1_chr2 66137296 66140652 -
3 domain predictions
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LotjaGi2g1v0298400.1
n.a. DUF538 family protein (Protein of unknown function, DUF538); TAIR: AT2G03350.1 DUF538 family protein (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610; TrEMBL-Plants: tr|I3S0A6|I3S0A6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0298400 LjG1.1_chr2 77308271 77310640 +
3 domain predictions
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LotjaGi3g1v0095600.1
n.a. transmembrane protein, putative (Protein of unknown function, DUF538); TAIR: AT5G54530.1 serine protease, putative (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610; TrEMBL-Plants: tr|I3SN87|I3SN87_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0095600 LjG1.1_chr3 11912110 11914609 -
3 domain predictions
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LotjaGi3g1v0197700.1
n.a. DUF538 family protein (Protein of unknown function, DUF538); TAIR: AT3G08890.1 hypothetical protein (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610; TrEMBL-Plants: tr|I3SL86|I3SL86_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0197700 LjG1.1_chr3 28960640 28965273 -
3 domain predictions
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LotjaGi3g1v0450600.1
n.a. DUF538 family protein (Protein of unknown function, DUF538); TAIR: AT5G46230.1 hypothetical protein (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610; TrEMBL-Plants: tr|A0A1J6JUD2|A0A1J6JUD2_NICAT Uncharacterized protein; Found in the gene: LotjaGi3g1v0450600 LjG1.1_chr3 86414327 86414737 -
3 domain predictions
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LotjaGi4g1v0046500.1
n.a. transmembrane protein, putative (Protein of unknown function, DUF538); TAIR: AT1G61667.1 serine protease, putative (Protein of unknown function, DUF538); Swiss-Prot: sp|P23467|PTPRB_HUMAN Receptor-type tyrosine-protein phosphatase beta; TrEMBL-Plants: tr|I1KLB5|I1KLB5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0046500 LjG1.1_chr4 5447639 5448318 -
3 domain predictions
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LotjaGi4g1v0333900.1
n.a. plant/protein (Protein of unknown function, DUF538); TAIR: AT5G49600.1 plant/protein (Protein of unknown function, DUF538); Swiss-Prot: sp|Q8RVL2|DEK1_ARATH Calpain-type cysteine protease DEK1; TrEMBL-Plants: tr|A0A1J7G483|A0A1J7G483_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0333900 LjG1.1_chr4 71292612 71293685 +
3 domain predictions
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LotjaGi4g1v0374200.1
n.a. DUF538 family protein, putative (Protein of unknown function, DUF538); TAIR: AT5G19860.1 transmembrane protein, putative (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610; TrEMBL-Plants: tr|G7LHY2|G7LHY2_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi4g1v0374200 LjG1.1_chr4 75355714 75359277 -
3 domain predictions
 –
LotjaGi4g1v0374300.1
n.a. DUF538 family protein, putative (Protein of unknown function, DUF538); TAIR: AT1G55265.1 DUF538 family protein, putative (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610; TrEMBL-Plants: tr|I1KSA4|I1KSA4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0374300 LjG1.1_chr4 75360477 75361414 +
3 domain predictions
 –
LotjaGi5g1v0249800.1
n.a. DUF538 family protein (Protein of unknown function, DUF538); TAIR: AT1G02816.1 pectinesterase (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610; TrEMBL-Plants: tr|I3T2W4|I3T2W4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0249800 LjG1.1_chr5 55825405 55832285 +
3 domain predictions
 –
LotjaGi5g1v0320300.1
n.a. transmembrane protein, putative (Protein of unknown function, DUF538); TAIR: AT1G61667.1 serine protease, putative (Protein of unknown function, DUF538); Swiss-Prot: sp|Q8EU99|KITH_MYCPE Thymidine kinase; TrEMBL-Plants: tr|A0A072UN91|A0A072UN91_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi5g1v0320300 LjG1.1_chr5 63781664 63783397 -
3 domain predictions
 –
LotjaGi6g1v0216600.1
n.a. DUF538 family protein (Protein of unknown function, DUF538); TAIR: AT4G24130.1 DUF538 family protein (Protein of unknown function, DUF538); Swiss-Prot: sp|Q5UQ90|YL532_MIMIV Cytochrome P450-like protein L532; TrEMBL-Plants: tr|I3SEE7|I3SEE7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0216600 LjG1.1_chr6 51853369 51855102 +
3 domain predictions
 –
LotjaGi6g1v0261800.1
n.a. plant/protein (Protein of unknown function, DUF538); TAIR: AT5G49600.1 plant/protein (Protein of unknown function, DUF538); Swiss-Prot: sp|A3PEY9|DAPAT_PROM0 LL-diaminopimelate aminotransferase; TrEMBL-Plants: tr|A0A1J7G483|A0A1J7G483_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0261800 LjG1.1_chr6 57418307 57419109 +
3 domain predictions
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LotjaGi6g1v0309200.1
n.a. DUF538 family protein (Protein of unknown function, DUF538); TAIR: AT5G46230.1 hypothetical protein (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9SKT7|NDB4_ARATH External alternative NAD(P)H-ubiquinone oxidoreductase B4, mitochondrial; TrEMBL-Plants: tr|K7MAI5|K7MAI5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0309200 LjG1.1_chr6 62636456 62637798 -
3 domain predictions
 –
LotjaGi6g1v0323600.1
n.a. DUF538 family protein (Protein of unknown function, DUF538); TAIR: AT4G24130.1 DUF538 family protein (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9UKM7|MA1B1_HUMAN Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase; TrEMBL-Plants: tr|M5WN02|M5WN02_PRUPE Uncharacterized protein; Found in the gene: LotjaGi6g1v0323600 LjG1.1_chr6 63933633 63938307 +
3 domain predictions
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LotjaGi6g1v0344000.1
n.a. transmembrane protein, putative (Protein of unknown function, DUF538); TAIR: AT1G61667.2 serine protease, putative (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610; TrEMBL-Plants: tr|I3SVU2|I3SVU2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0344000 LjG1.1_chr6 65672165 65673809 +
3 domain predictions
 –