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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0446800 |
| Transcript ID | LotjaGi1g1v0446800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dehydration responsive element binding transcription factor; TAIR: AT2G40340.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q8LFR2|DRE2C_ARATH Dehydration-responsive element-binding protein 2C; TrEMBL-Plants: tr|V7B6W7|V7B6W7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0446800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:94563193..94565555) extracted from Lotus japonicus Gifu genome v1.2.
TTCCTATTCAAGTTCCAAAACCTCTCTAAAACCTTAACTTCATAACAAAGGTGAATCATCCCAACTACATACTTCTATAG TATCAAAAGCGCATGAAGACTGATATTATTTCTGGGTTAGTTACTCTTTCCTCAATTCATCTCAACCTATTTATTATTTA TAGCTCCATGCCTTAGTTATGTTCAATTTATAAGCTTCTCTTTCATTTAAGCCAAATTGTATCTTGTTTTTAATTTATTT ATTTTTTTATTGCACCAGTTTTTTGATCCTTGTTATTATTGGTGTATAGCAAGTTATTTGTTTGTTATGTTTTGTTACAA TTCTATTGAATAGTGCTTTGATTAGTTACTGATAGAGCTTTGTTCATCAGAAATTGTAACAAACCATAACAAACAAGTAA TTAACTTGCTAAATAGTGATGAATTTCTGGTTTCTGTATAAGCTTTTGTTATAAGGATACATTTTTGCTAATGATTTGTT AGGGAAGTTGGTAAAAATTTATTTGTTAATTTTTCTTGATTGGAATTGCTGCAGAGATAGGAGATCACGCAAGAGGCGCG TTGGTGGAAGAGTTGATTCAGTGGAAGACACACTTGAGAAGTGGAAGAAGTACAACAAGCAGCAAGAGCTTGGTGTTGGA GAGGATGGGGTGGAAAAGATTCACAAAGTTCCCGCGAAGGGCTCGAGAAAGGGGTGCATGAGAGGTAAAGGCGGGCCTCA GAACTCTGATTGCAAGTTCAGGGGCGTGAGGCAGAGGATTTGGGGGAAGTGGGTTGCTGAGATTCGCGAACCGATCAACG GGAAACATGCAGGTGAGAAGGCGAATCGGCTCTGGCTTGGTACTTTCTCTACAGCTCATGAAGCTGCTCTTGCTTATGAT GAAGCAGCTAAGGCCATGTATGGCCCTTGTGCCCGGTTGAATTTTCCGGAGTCAAGGCCTAATGGATCATCATCACCAAG TGGCTCTTCAGACACTTTGAGTGGTGGTGGTGATCTTGCAAAAGCTGTGGAATTGGAGGGGAATCTTCATCAGTCAAGTG GAGAAAAACTCAGATTTTCTGCTGTTGGAGTGTTTGATGAAAGTGCTGAGAGAATGGTTCCTTCTGAAGCTTGTGTGTTT GATGACTCGGTTGAGGACTCGAAGGAAGTGACGAATGATGATTTCCAATGTCGAACAAATGAGAACTGTAAGAGTATAAC TCAGCAAGGGTCTCTCAAGAATGCTAAGTATGAAATTTCTAGAGATAATGATGGAAAAAAGAAGGAATCAGAGGTGAATT TGAATAACTATGTCTGGAAAAATTTGCAGGAGGGGCCTGTGGTTGTAGCCATGAATTCAAGAGCTGGTTATAGATCATGT GATGCTACTGAACATGAGATTCTGGTGAAGAGTGAAGGAACCAAAGGAGAATCAGTGGAGCCTTTGAATTCCCTTGAGTT GAGCTGCAATTACCACCACCTGCATAATATGCTGCCAGAGAGAGATCTAAGACCAAATTCTGAGCATTTTAACAGCATCC AACGCGAGCCGATTGCGAAGAAACACTGGAAGGAAGTGATTTCTGAAATCCTGGAACTTTGTTGCAGCAGCAATAACTCA AAGATAAGTGTTCAGTCACAAAATGAGCCATGTATAAATGAAAATTTTGATGAGATGAAGACCGGGCTTAAGGGTTTGGA GTGCAAGATGAGAGTCCATTCTATTGGTTTCAAGAATGAGACACCAATTGTAGAAGATTCCAATCATTCCCTGCAGAGAA TTCATCTGTTTGGTGGTGGTGGCACTGTTGGATTAAATGAGAGAATGTCTCAAGCTGAGGATTTGAGCACCAATACTCGT CGAATCTCAAGGTTGCAAGAGAAAGGAAATTATGGAAATGCACTGCCCGGATTTAGTTCCGGGCAGGGTAAGAAGCTGTG TGATTTTTCTCAACATCTTCAGAAATTGGGTGAACATTGGAATAATAAGCAGTTTGCAGACATGGAAGTGAGTTATGATT ATAGTTTCTTAAGTCCTGATTATGATTTTGGCTTATTGGAGGAGAAGAAGTTACTAGATGTGTGTTTTTCACATCTAGGA TCTTAGAGTTCCTAGAAGTTTACACTGTTCTGTTTTTCACCTAGGTGGGTTGTTCACATATAGGATCTTTTCTGTTTTTT CACTATGGTGGGGTTATTGCTGTTTTTTTCCCAACCTTAGTGATCCAATAAGGCCATGTTTCCATTCTCTTATCCATGTC TCAATTACTACATATATTCTATTCTAAGAATCTGCACTAATGTCCAAGTTGATGAATTATGATATGCCTTTCCTTAGCAT TTGAAAGAAACGGCCTAATTTAGTTATTGCTGCTATAACAAAG
CDS sequence (LotjaGi1g1v0446800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGACTGATATTATTTCTGGAGATAGGAGATCACGCAAGAGGCGCGTTGGTGGAAGAGTTGATTCAGTGGAAGACAC ACTTGAGAAGTGGAAGAAGTACAACAAGCAGCAAGAGCTTGGTGTTGGAGAGGATGGGGTGGAAAAGATTCACAAAGTTC CCGCGAAGGGCTCGAGAAAGGGGTGCATGAGAGGTAAAGGCGGGCCTCAGAACTCTGATTGCAAGTTCAGGGGCGTGAGG CAGAGGATTTGGGGGAAGTGGGTTGCTGAGATTCGCGAACCGATCAACGGGAAACATGCAGGTGAGAAGGCGAATCGGCT CTGGCTTGGTACTTTCTCTACAGCTCATGAAGCTGCTCTTGCTTATGATGAAGCAGCTAAGGCCATGTATGGCCCTTGTG CCCGGTTGAATTTTCCGGAGTCAAGGCCTAATGGATCATCATCACCAAGTGGCTCTTCAGACACTTTGAGTGGTGGTGGT GATCTTGCAAAAGCTGTGGAATTGGAGGGGAATCTTCATCAGTCAAGTGGAGAAAAACTCAGATTTTCTGCTGTTGGAGT GTTTGATGAAAGTGCTGAGAGAATGGTTCCTTCTGAAGCTTGTGTGTTTGATGACTCGGTTGAGGACTCGAAGGAAGTGA CGAATGATGATTTCCAATGTCGAACAAATGAGAACTGTAAGAGTATAACTCAGCAAGGGTCTCTCAAGAATGCTAAGTAT GAAATTTCTAGAGATAATGATGGAAAAAAGAAGGAATCAGAGGTGAATTTGAATAACTATGTCTGGAAAAATTTGCAGGA GGGGCCTGTGGTTGTAGCCATGAATTCAAGAGCTGGTTATAGATCATGTGATGCTACTGAACATGAGATTCTGGTGAAGA GTGAAGGAACCAAAGGAGAATCAGTGGAGCCTTTGAATTCCCTTGAGTTGAGCTGCAATTACCACCACCTGCATAATATG CTGCCAGAGAGAGATCTAAGACCAAATTCTGAGCATTTTAACAGCATCCAACGCGAGCCGATTGCGAAGAAACACTGGAA GGAAGTGATTTCTGAAATCCTGGAACTTTGTTGCAGCAGCAATAACTCAAAGATAAGTGTTCAGTCACAAAATGAGCCAT GTATAAATGAAAATTTTGATGAGATGAAGACCGGGCTTAAGGGTTTGGAGTGCAAGATGAGAGTCCATTCTATTGGTTTC AAGAATGAGACACCAATTGTAGAAGATTCCAATCATTCCCTGCAGAGAATTCATCTGTTTGGTGGTGGTGGCACTGTTGG ATTAAATGAGAGAATGTCTCAAGCTGAGGATTTGAGCACCAATACTCGTCGAATCTCAAGGTTGCAAGAGAAAGGAAATT ATGGAAATGCACTGCCCGGATTTAGTTCCGGGCAGGGTAAGAAGCTGTGTGATTTTTCTCAACATCTTCAGAAATTGGGT GAACATTGGAATAATAAGCAGTTTGCAGACATGGAAGTGAGTTATGATTATAGTTTCTTAAGTCCTGATTATGATTTTGG CTTATTGGAGGAGAAGAAGTTACTAGATGTGTGTTTTTCACATCTAGGATCTTAG
Protein sequence (LotjaGi1g1v0446800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKTDIISGDRRSRKRRVGGRVDSVEDTLEKWKKYNKQQELGVGEDGVEKIHKVPAKGSRKGCMRGKGGPQNSDCKFRGVR QRIWGKWVAEIREPINGKHAGEKANRLWLGTFSTAHEAALAYDEAAKAMYGPCARLNFPESRPNGSSSPSGSSDTLSGGG DLAKAVELEGNLHQSSGEKLRFSAVGVFDESAERMVPSEACVFDDSVEDSKEVTNDDFQCRTNENCKSITQQGSLKNAKY EISRDNDGKKKESEVNLNNYVWKNLQEGPVVVAMNSRAGYRSCDATEHEILVKSEGTKGESVEPLNSLELSCNYHHLHNM LPERDLRPNSEHFNSIQREPIAKKHWKEVISEILELCCSSNNSKISVQSQNEPCINENFDEMKTGLKGLECKMRVHSIGF KNETPIVEDSNHSLQRIHLFGGGGTVGLNERMSQAEDLSTNTRRISRLQEKGNYGNALPGFSSGQGKKLCDFSQHLQKLG EHWNNKQFADMEVSYDYSFLSPDYDFGLLEEKKLLDVCFSHLGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 5 | 417 | 413 | 1.7E-121 | – | |
| PANTHER | 5 | 417 | 413 | 1.7E-121 | – | |
| Pfam | 74 | 131 | 58 | 3.9E-13 | ||
| Gene3D | 74 | 141 | 68 | 1.6E-30 | ||
| CDD | 74 | 141 | 68 | 3.51082E-32 | ||
| ProSiteProfiles | 75 | 139 | 65 | 21.641 | ||
| SMART | 75 | 145 | 71 | 8.3E-36 | ||
| SUPERFAMILY | 75 | 140 | 66 | 2.68E-18 | ||
| PRINTS | 76 | 87 | 12 | 9.8E-9 | ||
| PRINTS | 105 | 121 | 17 | 9.8E-9 | ||
| MobiDBLite | 140 | 157 | 18 | - | – | |
| MobiDBLite | 140 | 161 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0446800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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