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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0447300 |
| Transcript ID | LotjaGi1g1v0447300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Integrator complex subunit 4; TAIR: AT3G08800.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q8VZA0|SIEL_ARATH Protein SIEL; TrEMBL-Plants: tr|G7KTA8|G7KTA8_MEDTR ARM repeat protein; Found in the gene: LotjaGi1g1v0447300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:94615744..94621897) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAAGCTAAGAGAGTAGTTCATTCAAATGTGAAAATTGCGAATAAGCATCTCCTCCCCCAACCGCCTCACCCATCTGC TCTCCGCCGCCGTCACCACCACCTTACCGGCGATGGACGACACTTCCGAACCCGAACCAGAAACCGCACCTAACCAAACC CAACAACAACAACCTCTCTCTCTCCACACCCTCTCTTCCATGAGGTCTCTCCTCATCAACCCTTCAACCCCAAAACGCAC CGTTTCCTCCATCCTCGAAACCCTAACTCGCTCCCCTCAACTCACTCACCACTCCCTCAACCTCCTCTCCGAACTCGCCA CCCTACACCCTTCATTCACCCTCGACACACTCCTCCCCTCCGCGGCTGAGTCCACCACTCGCCTCGCCGTTGAGGCCCTC GCCGCTTTGAAGCCGGGTTGCGAACTCGACGGCGAAACCTTTGTCTCGCTCTGTTTCGGGCCCTCCGTGCCGGCGCGGCT GTGGATGCTGAGGAATGCGGGTTTGGGGTATCGGGTTCGACCCGCATTGCTGTTTCCGGTGCTGTTGGGGTTCACGAGAG ACCCTTTCCCTTATGTGAGGGAGGCTTCGTTGGAAGGGCTCGTTCGGTTGAGCGAGTGTGGAGAGTTCCAAGACCTTGGC TTGGTGAAAGGGTGTTATCAACGTGCCGTTCAGCTTCTCGGTGATGTGGAAGGTTGCGTTAGGATATCTGCGCTTCGTGT TGTAAGGATCAAAACTCTATTTCGCTTGGAATGAATCTTAGAAATTTTCATTTCACCTTAAATTTTCAAGTATTTACTAA TAAGGTGTAACGCAACTGGTAGATAGTCTTAGGCATTATCCAAGGATTGATCATTGTCGGTGCGTATTGAGAAACATTTG TTGGTAGAAGCTTACTCACTTAATGCGATCTAGAGTCTCGGTGGATTAGTTTCATTTAAGAGGATTCAAATCTAATATGT TTTGGCTGAATGGGAAATAATAGGTATGACTCCATTAAAATTTAAAAATGCTCTAGACTCTAGTACCCAACCCAAGGACA GACACAAGATGAATTCAAAAAAACTAGTTTTAGGTTAGAACGCACACTTCATTCTCCCTAGTGTTGACTTGCATTCCAAT CCTTTGTGTTTTCATTTAATTTTTTTTTTCTTCCCTAAATATTGATTTTGATTACAATGTATACTTAGCATCAATGTATC AAATTTGGACTCACAGCCACAGTTGCAACCTCAATATCAAGGTTCTAAAAGTCATATTTGCATGCGGTCTTTGGCAATAT CAATGGCTGTGACATAACCTAGATGGCAATTTAAAACCTTGCTAAGCATTAGATTGGTTTGGTTGTGGTGAGATCATCAA AGTAGTATATCAATATCATTACTATGATGATTAGAATGAGAAAATCTGATGCTTTGGTGTTAGTTTCACTAGATGTTGTG TCTTGTTGAGTTCAGTTAGTGTTGAATGATTAATATTCTGTTTTTAAGCTAGTTTGTGTAAGCAGATTGGCGTGATGGTT GTGATTGTTTGAATGATTTAGCTGTGTGATTTTTCAGGTAGCTTCATGGGGTTTGATGTTAGCAGCTTTTAATGCAGACA TGAAGGTGTATTGGTCCAATGAAGTATTTGCCAAGGTATATTCTTGTATTGTGGGTTGCACTTAGTTTCAAGGATTCTAT GTCCTGAACTTTTTGGTGTTGAGTGTGTTTGAGGTTTCAGGCATTTCTGACAGTGCTGGCTGGTCCCCTCTACATCACAT AACACATTCACTGCGTGTGTTGTAGCTTTGTTCTGCGGCAAGAGATATGAGCATGAAGGTCAGGGTTGAAGCCTTTAATG GCCTCAGAAAGATGGAAGTAGTATCTGAGGATATTCTTATGCAAAGTTTATCAAAGAAAGTTACAAAGGTTGGAAAGGGA AAGGAAACATTGGATGAGAGAAAATCTGAACAGTTTGTGATGCTGGCACCTAGTGTTGCTGGTGCACTAGTTCATGGACT TGAGGATGAGTTTTTTGAGGTAATTTATTTGAATATCTATGAGCCGTAATTTGCTCATTGTTTACAGAACCTCATCTAAA AGTTGACTGGAACTATCTGCTAGTGCTGCATGACTTATTCCTTATGTGATTACTTGACTGCATTTCTGCTTTACCTGAAG GTGCGGAAGGCTGCATGCCAGTCCCTACACAGACTGACGATCCTCTCTGCTAAGTTTGCTTGTGAAGCCCTGGACTTGTT AATGGATATGCTGAATGATGATTCAGTGGTGGTTCGGTTTCAAGCTTTAGAAACCATGCATCATATGGCAATTAATGGCT GTCTAAAGCTTCAGGAAAAGCACGTACACATGGTATATTTCTCATCCTTCAACCTTCATTAGTCGTTTTGCTCTTTATGA TTTCCAGCCTACAATATCTCTTCTGTTTAAAAACTGCTAGATGCACCTCATTATTGTTGGACAAATTAGGGAACCTCCTT CCTGTTTATGTATGGAGATTTAATGATTATAATCTGTGTACTTCTGTTTCTTAATTATATAGTTTAGCTTGTTTTCTGCC GCAGGACAAATATTGGGGGGGGGGGATATCGTGTCTTTTTTAGAGGTTTTATTTTATGGTCAATGAGTGATGCACTTATG CTGGTGGTGTAGTTTTCCCGGATAGATGTTTGGGTATCACATTGATAATAAGAGGTACAGTATGTTGCATGTATGAACTA TAGCATACAAATTCAAGAAGACTCAGTCTATTATGAAGTATGGACATATGATGGATTTAGTAATTGCAACAGTTATAGTT AGAGTTCAGTTACCCTGTTAGGGATTCAGTCAATGAAATTACTGAATACATTTCTCTTCTTTCAAACTCAGGTTCTCTTT TCTCTCTCTCTCTCTCTCTCACACACACAGACACACACACACACACACACACACACACACTCTAGATTATCAATAATAAA TTTTCTACTAGATTTGTAGAATGAACTTGGTAACTAGGATCCAAAAAGTTGCTTTTGGAAAGTAAAATGACAGGTGAGGT GCGTGGAAGCCAAAATGGTATGATTTGAGAGATTGGTTAGATATTGGAGGTATATAAACAAAAAAAAAAGAGTGTTTTGT ATCTTCAGGAAGATCAAATTAGATACGAAAAACAACCTCACTATAGTTGCAGACTTACTCTTTAACTAATAAACTTGTCT TGGATGTCCCATCAGGGTTTTAACTTAAAAAAAAAACTTCATAAATTATAAATAAACAACTTGGATGGGTTGTGGGGACT TTTGTGTGATGGGTTTATGTATATCGAATGCGCTTTCTGAGATGGATAATATCTTTTCAATATATATCTAAATTGCCAAA CAGATGAATTTTCTCTGATCTTTGGCTAACTTCCACAATTAATTTACTTTTTTTTCTTACCTATGTGGCATTTCGCTACT GATATTCTGCCTGTGTCATTTATTTTGCAGTTTCTTGGTGCTTTAGTGGATTGCAGCTGGGAAGTAAGACATGCTGAGAG GAAAATTCTTAAAATAGTCAAGCTAAATGATCTAGCATTATTCAAATCATCTATTGACAGACTTCTGGAGAATTTACAGA GTTATTCACAGGTTTGATTTACACTGTTTTCCCATGTCTTCTATTTCTTCAAATGGCAATGTGAGATATCATGTTAATTT TATAAATTCTTATATTCACGTGGGTCTGCAACAATATGTGACCTTACTAGACAAAGTTGGTATTGCATTGCTTATGAAAG TCTTCATTCGCTTGTGTGGTCATTTTCATGTCGATGGCTTAACTATATTATCTTATAAGTTCATTCTTATTATTCTTTAA AAAATAGTTATTAGTCATTACCTATGAAACTCATGTTGGCTTCCAGAGTTCAAGTTGCTGAATAGTGAATATACACCCAC TTTTTAGCATTTTTTAATTGTTATTTCTTCCCTATGTTTAACTTAAATTACTATGATTCCAGGATGAAGCTGATGTATTT TCAGCTTTCTCACATCTTGGTAGAAATCACAAGAAATTTGTTGGCTTGATTATGAGGGAAACTTTTGAAGAGGTACGTTT GTTCATATTATAATATAAACCACATAAACATAAAATATCTTAAACATTAGGGATGTTTTACATGTCAATAAAACAGATGT GCATATAGTCCTTAGAGGGGCCCTGATAAATTTTTGATGTTGCTCTTACAGGTAGAAGCAGCTTTTGAAGGAAATGAAGA ATTTAATAGTGCAAGGATCGCTGCACTTTTAATTCTTTCTGTATCTGCTTCACTATTCAATGCAGATATAGGCAGTATAC CACCATTGATGTTTTCTTATGCAGTTACACTGCTGGGTAGAATTTATTATGCTTTTAGTGATATCATGGATAGGGATGCC CTTTTGGCATACCTTTGTGAGAGAAGCAGATCTACGGCGTATTCTGCAGCAAATATTAACCTAGAGGAAGGGAAGCAACA GTTGCCTTTATCTGAAGGTGATGCTGCTAATTTATCAAGCAATGAGGTAATGGACTCCATAATGGTCTCGCATATCATGA GAGAGCAAAAAGAGGTAGCCAATTATCAAGTGGAACAAAATCAGTCATTACATAATGAAGTGACGAACTTCACTAATTAC ATCCTTGACAAGTTCCCTGGTTTATGGTCAATGATACAGACAGGTGGTACAAATGAAGTGCTAAGGTCCTTCAGGTAATC AATAAATTATAGCTTCAGTAACATTTGTGCCTTGGCATTTACTGCAATCTGCTTCGTCCGATATTTATATTTGGTCCATG TTGCATGTCAGTAATACCAGATGTAAATATTTTGCTTTAGAGTAACTCAATCTTGGCATATAGATGTATATTTGTGTGCT GAGTTTACATTACATACAATAATACGGGGATTCTGATTTGTTGGTGTCTCTATATTTGGTTTGACGGATTGTAATTTAGG ATATCCTTCAAGCTTATAAATTTCACCATTTTTATTGTTTATTAAGTATGAAGCTCGTATTATTCGTTTGCTTTTTGTTT TTTAATCATTTTTCCTTTTGGGGTGGATGATGCAGGTGTTTGAAAGAGGACTTAGCACTTCTGAAATTTGATTCTTTGGG ATCTGGTGATGCTTTGGCATTTACTGTCCTCTATCTCCGTAATATAACGCTACTTGTAGAAGTGTGGGAGCACTTGCACT TGGGGCCAGCAAATGGTTTGTCTTCATGTGGAACGGTACTGGAATCGAAACTTCAAAAGCTCGACAGAAGGGCAAAAGAG TTTCTGAGTAGGTTCGTAGGTTTTACGGCAGAAGAAGAATTGAATATCTTGGAGCTTATATTAGTTACTTATGCCCTCAG GCTATATAAAGTTGAAACCAGCTGTCTCAGTCTTACATTAGAGAGGTTGACTGCTATATATTTACGTTTTGTCTCTATCC TTAAAGAAAAATCGTCTTTGCCGTCAAATTTCGTAGCTGAACTTGGCAAGTTATTACATGAGTGCACCTCCACATATGAA GCTTCCTGCAGTCCACTTGAACTTGATAAATGTCTCAAGTTATTCTCCCTGAAGCAGTTTATGTTTCATGGAGGAATCAG ACATGTAAAGGCAGAACTAAGCATTCCCAATAATGACTCTGAACATCATCTTACCTTTGTTTCAGGACTACCAGTTGGTA TACAATGTGAGATAACTCTCCATAATGTTTTATGTGATAGTAGGTTGTGGCTGAGGATGAGTGTGGATGATGGTTCAACA CAATATGTCTTTCTTGATTTGGACCGTTTTGAAGGCTCCAGAGAGGTAAGGAAGTTAGCTTTCGTTGTGCCGTTTTACAG AACACCAAAAGCTAATTCTCTTAAATTGAAGGTTTCTATTGGTTTGGAATGTATGTTTGAAAATGTTTGTCCAGTCCAGA GGTTTGGAGGTCCAAAACATGAACTAGTGCTTCTTTGTAAAGAAAAACAGGTTTATCTTTCAAAGGTTTATAATGATTAA ATTATTTTTGTAAAGAAAAACAGGTTTATCTTTGTAAAGTAAGTCCTACTGTAAATTATGGCATTAGTTTCATACAACCC CAAATTTGGATAACTTGGGCTAACTTTTGATCGTACATGAAGGAGTTTTCGTTGACCAAGATAGAACTTTAGAA
CDS sequence (LotjaGi1g1v0447300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGACACTTCCGAACCCGAACCAGAAACCGCACCTAACCAAACCCAACAACAACAACCTCTCTCTCTCCACACCCT CTCTTCCATGAGGTCTCTCCTCATCAACCCTTCAACCCCAAAACGCACCGTTTCCTCCATCCTCGAAACCCTAACTCGCT CCCCTCAACTCACTCACCACTCCCTCAACCTCCTCTCCGAACTCGCCACCCTACACCCTTCATTCACCCTCGACACACTC CTCCCCTCCGCGGCTGAGTCCACCACTCGCCTCGCCGTTGAGGCCCTCGCCGCTTTGAAGCCGGGTTGCGAACTCGACGG CGAAACCTTTGTCTCGCTCTGTTTCGGGCCCTCCGTGCCGGCGCGGCTGTGGATGCTGAGGAATGCGGGTTTGGGGTATC GGGTTCGACCCGCATTGCTGTTTCCGGTGCTGTTGGGGTTCACGAGAGACCCTTTCCCTTATGTGAGGGAGGCTTCGTTG GAAGGGCTCGTTCGGTTGAGCGAGTGTGGAGAGTTCCAAGACCTTGGCTTGGTGAAAGGGTGTTATCAACGTGCCGTTCA GCTTCTCGGTGATGTGGAAGGTTGCGTTAGGATATCTGCGCTTCGTGTTGTAGCTTCATGGGGTTTGATGTTAGCAGCTT TTAATGCAGACATGAAGGTGTATTGGTCCAATGAAGTATTTGCCAAGCTTTGTTCTGCGGCAAGAGATATGAGCATGAAG GTCAGGGTTGAAGCCTTTAATGGCCTCAGAAAGATGGAAGTAGTATCTGAGGATATTCTTATGCAAAGTTTATCAAAGAA AGTTACAAAGGTTGGAAAGGGAAAGGAAACATTGGATGAGAGAAAATCTGAACAGTTTGTGATGCTGGCACCTAGTGTTG CTGGTGCACTAGTTCATGGACTTGAGGATGAGTTTTTTGAGGTGCGGAAGGCTGCATGCCAGTCCCTACACAGACTGACG ATCCTCTCTGCTAAGTTTGCTTGTGAAGCCCTGGACTTGTTAATGGATATGCTGAATGATGATTCAGTGGTGGTTCGGTT TCAAGCTTTAGAAACCATGCATCATATGGCAATTAATGGCTGTCTAAAGCTTCAGGAAAAGCACGTACACATGTTTCTTG GTGCTTTAGTGGATTGCAGCTGGGAAGTAAGACATGCTGAGAGGAAAATTCTTAAAATAGTCAAGCTAAATGATCTAGCA TTATTCAAATCATCTATTGACAGACTTCTGGAGAATTTACAGAGTTATTCACAGGATGAAGCTGATGTATTTTCAGCTTT CTCACATCTTGGTAGAAATCACAAGAAATTTGTTGGCTTGATTATGAGGGAAACTTTTGAAGAGGTAGAAGCAGCTTTTG AAGGAAATGAAGAATTTAATAGTGCAAGGATCGCTGCACTTTTAATTCTTTCTGTATCTGCTTCACTATTCAATGCAGAT ATAGGCAGTATACCACCATTGATGTTTTCTTATGCAGTTACACTGCTGGGTAGAATTTATTATGCTTTTAGTGATATCAT GGATAGGGATGCCCTTTTGGCATACCTTTGTGAGAGAAGCAGATCTACGGCGTATTCTGCAGCAAATATTAACCTAGAGG AAGGGAAGCAACAGTTGCCTTTATCTGAAGGTGATGCTGCTAATTTATCAAGCAATGAGGTAATGGACTCCATAATGGTC TCGCATATCATGAGAGAGCAAAAAGAGGTAGCCAATTATCAAGTGGAACAAAATCAGTCATTACATAATGAAGTGACGAA CTTCACTAATTACATCCTTGACAAGTTCCCTGGTTTATGGTCAATGATACAGACAGGTGGTACAAATGAAGTGCTAAGGT CCTTCAGGTGTTTGAAAGAGGACTTAGCACTTCTGAAATTTGATTCTTTGGGATCTGGTGATGCTTTGGCATTTACTGTC CTCTATCTCCGTAATATAACGCTACTTGTAGAAGTGTGGGAGCACTTGCACTTGGGGCCAGCAAATGGTTTGTCTTCATG TGGAACGGTACTGGAATCGAAACTTCAAAAGCTCGACAGAAGGGCAAAAGAGTTTCTGAGTAGGTTCGTAGGTTTTACGG CAGAAGAAGAATTGAATATCTTGGAGCTTATATTAGTTACTTATGCCCTCAGGCTATATAAAGTTGAAACCAGCTGTCTC AGTCTTACATTAGAGAGGTTGACTGCTATATATTTACGTTTTGTCTCTATCCTTAAAGAAAAATCGTCTTTGCCGTCAAA TTTCGTAGCTGAACTTGGCAAGTTATTACATGAGTGCACCTCCACATATGAAGCTTCCTGCAGTCCACTTGAACTTGATA AATGTCTCAAGTTATTCTCCCTGAAGCAGTTTATGTTTCATGGAGGAATCAGACATGTAAAGGCAGAACTAAGCATTCCC AATAATGACTCTGAACATCATCTTACCTTTGTTTCAGGACTACCAGTTGGTATACAATGTGAGATAACTCTCCATAATGT TTTATGTGATAGTAGGTTGTGGCTGAGGATGAGTGTGGATGATGGTTCAACACAATATGTCTTTCTTGATTTGGACCGTT TTGAAGGCTCCAGAGAGGTAAGGAAGTTAGCTTTCGTTGTGCCGTTTTACAGAACACCAAAAGCTAATTCTCTTAAATTG AAGGTTTCTATTGGTTTGGAATGTATGTTTGAAAATGTTTGTCCAGTCCAGAGGTTTGGAGGTCCAAAACATGAACTAGT GCTTCTTTGTAAAGAAAAACAGGTTTATCTTTCAAAGGTTTATAATGATTAA
Protein sequence (LotjaGi1g1v0447300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDTSEPEPETAPNQTQQQQPLSLHTLSSMRSLLINPSTPKRTVSSILETLTRSPQLTHHSLNLLSELATLHPSFTLDTL LPSAAESTTRLAVEALAALKPGCELDGETFVSLCFGPSVPARLWMLRNAGLGYRVRPALLFPVLLGFTRDPFPYVREASL EGLVRLSECGEFQDLGLVKGCYQRAVQLLGDVEGCVRISALRVVASWGLMLAAFNADMKVYWSNEVFAKLCSAARDMSMK VRVEAFNGLRKMEVVSEDILMQSLSKKVTKVGKGKETLDERKSEQFVMLAPSVAGALVHGLEDEFFEVRKAACQSLHRLT ILSAKFACEALDLLMDMLNDDSVVVRFQALETMHHMAINGCLKLQEKHVHMFLGALVDCSWEVRHAERKILKIVKLNDLA LFKSSIDRLLENLQSYSQDEADVFSAFSHLGRNHKKFVGLIMRETFEEVEAAFEGNEEFNSARIAALLILSVSASLFNAD IGSIPPLMFSYAVTLLGRIYYAFSDIMDRDALLAYLCERSRSTAYSAANINLEEGKQQLPLSEGDAANLSSNEVMDSIMV SHIMREQKEVANYQVEQNQSLHNEVTNFTNYILDKFPGLWSMIQTGGTNEVLRSFRCLKEDLALLKFDSLGSGDALAFTV LYLRNITLLVEVWEHLHLGPANGLSSCGTVLESKLQKLDRRAKEFLSRFVGFTAEEELNILELILVTYALRLYKVETSCL SLTLERLTAIYLRFVSILKEKSSLPSNFVAELGKLLHECTSTYEASCSPLELDKCLKLFSLKQFMFHGGIRHVKAELSIP NNDSEHHLTFVSGLPVGIQCEITLHNVLCDSRLWLRMSVDDGSTQYVFLDLDRFEGSREVRKLAFVVPFYRTPKANSLKL KVSIGLECMFENVCPVQRFGGPKHELVLLCKEKQVYLSKVYND
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| MobiDBLite | 8 | 22 | 15 | - | – | |
| PANTHER | 15 | 920 | 906 | 2.1E-238 | – | |
| Gene3D | 22 | 398 | 377 | 2.6E-16 | ||
| SUPERFAMILY | 29 | 522 | 494 | 2.97E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0447300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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