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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0449400 |
| Transcript ID | LotjaGi1g1v0449400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY transcription factor; TAIR: AT2G38470.1 WRKY DNA-binding protein 33; Swiss-Prot: sp|Q8S8P5|WRK33_ARATH Probable WRKY transcription factor 33; TrEMBL-Plants: tr|I3T3Y7|I3T3Y7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0449400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:94860991..94865825) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTATATCAAAGGTGATGGTGGTATAGGCAATTATGGAGCTGAGTCAAACCCACAACTCTTGACCCAATATGGTTTTC CACGGTCAAACATATCTTTAGCTTCTGAGAAGCAACATCCAAGACTTTTGCTTGTGACTGCAACCCTTTTACCATATAAT CATGCATCATTTCTCTCTCTCTCTCCAATATCACTCACTTTGGACTCTCTGTCTCCTCCTACCCAGCCCCCAATATAAAT TCATTCAAACCCTTTCTTTTCATCTTCATTCCTAACCCAATTCATGAGGACACCATCTTCTTTCACTAACATGCTATCAA ACAACAGTAACATGACCATGGATGATCTTAATAACTGGGGTACTTCTGAAACTAATCATCAAGTTCCCAAATTCAACTCT GTTCAACCTCCCTCACCAACTTCTCCTTCTTCTTACTTGGCTTTTAGCCCAACTGAGTTCTTCAATTCACCTCTGTTTTC TCCAAATGTGAGTTACAAAAGATGAACCCTTTGTTAATTAACAAGTGTAGTTTAATGTTTTGGGCCATCACTGATTGTGG GTTTTTTCTCTTTTCTATGGTTTTAGATTTTTGCATCTGCTGCTACTGAGAGTTTTACTGGTGAAAAGGAGGATGGGAAA AACTACTCTGACTTCTCTTTCCACACGCAAACAGAGCCTTCATCTGGCTTCCAATCTCCCTCAAGCATGTTTCAAGAGGT AAGCACTATTGTTATATTTTTTTTTATGCATCGGAAAATAGTAGTTATTTTTTTTAAAAGAAATTTGACCAATTGGCTTA AACAAGTATTATTTTGTGTGTCTTTGTTATTTGTTTGATCACTAAGGACACTAGGAGACCGGTCCTTGATCTCTCTGCAA TTTTTAAAATATAGTGCAATTGGATAAACTGATTAATGAAGCGTTTTATTGTCATAAGCGCTTATCATATAACGAGTTTG GATACATAATTATTGGAGCTTATCAACTAGAAAAATTATTAGATAAGCTACAATAAATGATCTTTGGTATGCATCCAAAC TGGTTCAAAGTCTTAGCTAACCTCATAAAGTTATTGAAACAAGCTCAAAATAGCATACAAGTGGACATAAGGGTGTACTC ATGAGTTAATCCGAGCAGTTTATGAAGATAAGCTCAGAATAATTTATAAGTGGTTTATAAGAAGTTCATAAGCTATTTTC ATAAGATTAATCAAATACTTGCATAAGCATGTGTGTGAGAAGATAAATTCAAATAAACTCTTCCAAACACGGAAATAAGC ATTTATGTTTCTTTAATTAGCTTATGCTTTGTATGGCTTGTGGGGTCAGTTTATTGTTTACTTGTTTTGTATGGCCCTTT GAATTGTCGTTGCCTTCTTCTTTGTTCTTCTCTTCTTGTTTTACTTTTGTTGCTATAAACTAAGTTTGAATAGTTAAAAC ATGGTTCAAAACTTGACTAGCATATTCTAAGTTGAAAATGCCTTACTTAAAAGTATGTCAGTTTATGTTTCTATGTTTTG ACAAACTAAAATCTTCATTATAATGATTATCAAAGCAGCATATTCACAGAAAAACAAGGTCTAGTTTCTTGATGCCTTGG AAGTTGGAACTCGTTATTCATGTCATATATTTGGATTTTTATTCTAAATATTTGTTCTATATGAACAACAGGAACCCCCA AAGAAACAAGACTTATGGAAATTCAATGAACCTATAAAGCAAACTGGTTTTTCAAGTGAATGTATAGCAACAAAAGCAGA ATACCATTTACAAACTCAGAGCTTTTCCTCAGAAATGTTACCATGCAAACCAGAAATGCATAGCAATTCAATTCCTGGGT CTCATTATTCCAACTCCACGAATGCACCTCAGTCTGTTAGAGAACAACGGAGATCAGAAGACGGGTTCAATTGGAGAAAA TATGGGCAAAAACAAGTAAAAGGTAGCGAAAATCCACGCAGTTATTACAAATGCACGCATCCAAGTTGCTCAATGAGGAA GAAAGTTGAGAGGTCTTTGGATGGAGAAATTACTGAAATAGTCTATAAGGGAAGTCATAACCACCCCAAGCCCCAGTCTA CGAGAAGAACAAGCTCTCAACAATTTCATCAACCCTCTTCTTCATGCACCAACTCAGTTATTTCTGATATACAAGAAGAT TCTTCAGCATCTGTAGGAGAGGAAGACTTTGCGGCGCAAACATCACAAACTAGTTATTCTGGAGGAAATGATGATGATTT TGGACCAGAGGCCAAAAGATGGTATGATCTCTAATGACCTAATTCATAATTTTTCATAATTTTAGAATGAAATGTCATGA ACCAACTATCTCACAAGCTTAAGCTGTTGGATGAAGACACATGAATGGTTTTATAATAGAGCTTGAACATGCCGCCTCAC ATAAGAGCCCATCAGGCTTGTAGCGCGGACACTGCACAGACCATCTACCTTGTGCTGAAAATCAACTTTTTTACTAGAAT AATTTAAGGCAACAAGGATTGAATTCTAGCGAACTTGATTATTAAAGCTCTGATACCATGTTCCAAAAGCTTAAGCTGTT ACTTGAAGATACATGAATGATTTTATATTATAGCTTTTACTCTAAGAGCCAGTTTGGAGACTGGCTTATTGGAGCTTAAC TACAAGAAAATGCACTAAATAAGCTCCAATAAGTGCTATTTGTTTTGCATCCAAATGGGTACTAACTATGATTCTCTTTG TTGCAGGAAGGGAGATAATGAAAATGATAGCTATTCTGCCTCAGAGAGTAGAACTGTTAAGGAACCTAGAGTTGTTGTTC AAACTAGAAGTGAAATTGATATACTTGATGATGGCTATAGGTGGAGGAAATATGGACAGAAAGTAGTTAAGGGAAACCCA AATGCAAGGTAATTAACTGATGGCAACAAAGACTCTCTAGTTAATGGTTCTAACTTATAAGTATTGCAATTCATGTTGTT ACCAACATCAAAATTAACTTTATCTCTTGTTCAAAATATTGCATCTGCAGGAGCTATTACAAATGCACAGCCCAAGGTTG TTCAGTGAGAAAACACGTTGAGAGAGCCGCACATGATATCAAATCTGTTATCACAACTTATGAAGGGAAGCACAACCATG ATGTACCTGCTGCACGCGGTAGTGCAGGTTATAACATGAACAGAAATTCTCTGAACAGCACCGTATCAGCACCTATAAAG CCCTCAGTGGTGAGCTGTTATAATAATAGTGCATCTAGCTTCACAAATTCAGTTTATAAGACTAAGCTTCCAGAAAATGG AAATCAAGAATCATATCCACAGAACATATTGCAGAGTCCTGGAAGCTTTGGGAGGGATAGCTCATTCCTTCAGTCATTTC TATCAAAGGGTTTCTAAATTTGGGACCACAACTTTATAGTTTGTTTGTATTGGATATGTTTCTGTATAGAATGTAGGATT TTAGTTATGCATAGCAGAATAGAACCAAAGAATCATGAATGGTTACTTGGCACTACAGCCATAGTGATAGAAAATATAGC TGCAATGAATGTTGTCAAGCAGATACTAAGAATGAGTTGACTGATGAATACTGTTATTCTTTTGTTGTATTTAATTTAAT GGAAGAAAAGGTTTCTTTGGACTTTGAAAGTCTTTACAATTGTCAAGTACCTGGTAACAGATGTTCTTGTGCAGCAATTT CTACAATGATCTTTCTATTTTTAGTTTCATTAGATGATTTATGATGAATTTGCACCAACTTCATCACTGAGATTATGATC ATTTTTCAGTTGATAGACCTTGATAGCCCTAAAAAAAATCCTTAACATAACTTTGAAGACAACAAGAAAAGAAACACAAT TTACAAAGTTTACACGATTAAGAAATTTTTAAGAAAATTCTCAGGTCCAAGGTTGAAAGTTGAATTGAACAAAGTCAAGA TGTTATACATATAGTAATCACTAGACAGAGTGTGGAAAAAAATAAAGCTGACTTCTTGAATAATGCATCCACCACGTACT GCATAATGGTCAACAAACAGATTTAAGAAGAAAAAAATAAATATTATTTGTTTTCATAGATGAAATCAATATCATATCTT ACTGTAACATACACAATCAGGGAGAGATTGCCTTACCCCCTTTTTCTTAACATTGATATACAGATAAATGTTATTTACTG AGAAGTAAATTAAAGTATGAAACAATAATAGGTAGATTTTGTGGAAGTTCAGATATAAGGTTGTGTTGATAGTTTGTAGC CAGAAATGAGAGCTGACAATGCAAGACACAAGAAGGCGAAAATGGACATGCTAATAGCTGAAGCTGAAGAGTCCGTGAAT ATATTATCTGCTCCTTCCCTCATTCTATTTGTTATTGGAATTGCTGAAGAAGCTGACGATATCAAAAGATATGCAATGAT CTGCAACACAAAACATTGCCAATCAAACTAAACTCAAGTTCCTAGCATTTCATAATCTTGCAGAATCACACATAACATGA TTGAGAGCCAATCATAATGGTTTTGAATATAAAGTTTTGTCTAAAGCCTTGAATTTTTATCCGAGCGCAATGACGCCATG TGATCCAGATAGCCAACTTTACTTAATGTGATAAGGCTTTTGTTGCTGTTGTTATTATCTAACACTTTGAATTATTCAAA ATGAAGCCTCTCCTCCACCCACCCACAGGTCATCTACATTATATGGTGGTCCCATCAATGGACTCAAACTTCTCCAAAAT AATAAATTAAGGTCAATCAACGTTGCCCCCTTGTAATTGTATTATTGAAGCACTAAAAACGTCACTGAAAGTTGTTTGTC CTTAGAAAACTCTAGTTCTTACAATTGATTAATCG
CDS sequence (LotjaGi1g1v0449400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGACACCATCTTCTTTCACTAACATGCTATCAAACAACAGTAACATGACCATGGATGATCTTAATAACTGGGGTAC TTCTGAAACTAATCATCAAGTTCCCAAATTCAACTCTGTTCAACCTCCCTCACCAACTTCTCCTTCTTCTTACTTGGCTT TTAGCCCAACTGAGTTCTTCAATTCACCTCTGTTTTCTCCAAATATTTTTGCATCTGCTGCTACTGAGAGTTTTACTGGT GAAAAGGAGGATGGGAAAAACTACTCTGACTTCTCTTTCCACACGCAAACAGAGCCTTCATCTGGCTTCCAATCTCCCTC AAGCATGTTTCAAGAGGAACCCCCAAAGAAACAAGACTTATGGAAATTCAATGAACCTATAAAGCAAACTGGTTTTTCAA GTGAATGTATAGCAACAAAAGCAGAATACCATTTACAAACTCAGAGCTTTTCCTCAGAAATGTTACCATGCAAACCAGAA ATGCATAGCAATTCAATTCCTGGGTCTCATTATTCCAACTCCACGAATGCACCTCAGTCTGTTAGAGAACAACGGAGATC AGAAGACGGGTTCAATTGGAGAAAATATGGGCAAAAACAAGTAAAAGGTAGCGAAAATCCACGCAGTTATTACAAATGCA CGCATCCAAGTTGCTCAATGAGGAAGAAAGTTGAGAGGTCTTTGGATGGAGAAATTACTGAAATAGTCTATAAGGGAAGT CATAACCACCCCAAGCCCCAGTCTACGAGAAGAACAAGCTCTCAACAATTTCATCAACCCTCTTCTTCATGCACCAACTC AGTTATTTCTGATATACAAGAAGATTCTTCAGCATCTGTAGGAGAGGAAGACTTTGCGGCGCAAACATCACAAACTAGTT ATTCTGGAGGAAATGATGATGATTTTGGACCAGAGGCCAAAAGATGGAAGGGAGATAATGAAAATGATAGCTATTCTGCC TCAGAGAGTAGAACTGTTAAGGAACCTAGAGTTGTTGTTCAAACTAGAAGTGAAATTGATATACTTGATGATGGCTATAG GTGGAGGAAATATGGACAGAAAGTAGTTAAGGGAAACCCAAATGCAAGGAGCTATTACAAATGCACAGCCCAAGGTTGTT CAGTGAGAAAACACGTTGAGAGAGCCGCACATGATATCAAATCTGTTATCACAACTTATGAAGGGAAGCACAACCATGAT GTACCTGCTGCACGCGGTAGTGCAGGTTATAACATGAACAGAAATTCTCTGAACAGCACCGTATCAGCACCTATAAAGCC CTCAGTGGTGAGCTGTTATAATAATAGTGCATCTAGCTTCACAAATTCAGTTTATAAGACTAAGCTTCCAGAAAATGGAA ATCAAGAATCATATCCACAGAACATATTGCAGAGTCCTGGAAGCTTTGGGAGGGATAGCTCATTCCTTCAGTCATTTCTA TCAAAGGGTTTCTAA
Protein sequence (LotjaGi1g1v0449400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRTPSSFTNMLSNNSNMTMDDLNNWGTSETNHQVPKFNSVQPPSPTSPSSYLAFSPTEFFNSPLFSPNIFASAATESFTG EKEDGKNYSDFSFHTQTEPSSGFQSPSSMFQEEPPKKQDLWKFNEPIKQTGFSSECIATKAEYHLQTQSFSSEMLPCKPE MHSNSIPGSHYSNSTNAPQSVREQRRSEDGFNWRKYGQKQVKGSENPRSYYKCTHPSCSMRKKVERSLDGEITEIVYKGS HNHPKPQSTRRTSSQQFHQPSSSCTNSVISDIQEDSSASVGEEDFAAQTSQTSYSGGNDDDFGPEAKRWKGDNENDSYSA SESRTVKEPRVVVQTRSEIDILDDGYRWRKYGQKVVKGNPNARSYYKCTAQGCSVRKHVERAAHDIKSVITTYEGKHNHD VPAARGSAGYNMNRNSLNSTVSAPIKPSVVSCYNNSASSFTNSVYKTKLPENGNQESYPQNILQSPGSFGRDSSFLQSFL SKGF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 49 | 49 | - | – | |
| PANTHER | 23 | 474 | 452 | 1.3E-163 | – | |
| PANTHER | 23 | 474 | 452 | 1.3E-163 | – | |
| MobiDBLite | 80 | 116 | 37 | - | – | |
| MobiDBLite | 90 | 112 | 23 | - | – | |
| MobiDBLite | 158 | 212 | 55 | - | – | |
| MobiDBLite | 165 | 181 | 17 | - | – | |
| Gene3D | 172 | 247 | 76 | 8.7E-29 | ||
| ProSiteProfiles | 182 | 246 | 65 | 23.433 | ||
| SUPERFAMILY | 183 | 246 | 64 | 1.16E-24 | ||
| SMART | 187 | 245 | 59 | 1.6E-35 | ||
| Pfam | 188 | 244 | 57 | 1.1E-25 | ||
| MobiDBLite | 237 | 325 | 89 | - | – | |
| MobiDBLite | 242 | 298 | 57 | - | – | |
| MobiDBLite | 301 | 325 | 25 | - | – | |
| Gene3D | 327 | 403 | 77 | 1.9E-33 | ||
| SUPERFAMILY | 334 | 402 | 69 | 6.93E-28 | ||
| ProSiteProfiles | 337 | 402 | 66 | 37.195 | ||
| SMART | 342 | 401 | 60 | 7.4E-36 | ||
| Pfam | 343 | 400 | 58 | 1.1E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0449400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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