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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0450400 |
| Transcript ID | LotjaGi1g1v0450400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G00160.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8LF09|FDL23_ARATH F-box/FBD/LRR-repeat protein At4g00160; TrEMBL-Plants: tr|G7JB15|G7JB15_MEDTR F-box/RNI/FBD-like domain protein; Found in the gene: LotjaGi1g1v0450400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:94948794..94953723) extracted from Lotus japonicus Gifu genome v1.2.
ACTCGAACTCTATACATTTTTTAAGGGGAACCGATCACGTATCACTTGAAGTAATGACTCGTGAGTAAATACAACCTATT CTTAACAGAACTCTAACTCAATTAAAAAAAAATACAGTGATCTCATAATTTTTCCCACTTCCAACCGCCACTCTAATTTT TCTTTTAGCGCGGCTACAGCTTTTTGCGAGAAAGGCAAGAAGGAACAGCGGCGGCGGCACGGCAAGTGACAGCAGCTCCG CCCTCTCTCTCGCCAGCGGGAAGGAAAGCGGCAGCTCGACATTCGCTCTAGTACACCAAGCGGACAGCGGCAAGGTAGCA TAACAAGGTAATTGCTTTCTCTCCCTCACAGTTGTATGTGATTTATCTGATTCTGGAAAATAGGTTGGGGTTTCTACCAA GATTTATCTGATTTTTCTACTCTTTAGGATTCTGTTGCTGTGTTGGTTTCATTTGTGTTTTCTCATTGTGTTCTTTTGGA TGATTTATGCTGTTGAAATGTTGCCACAGATTTCGTTTCATTGCATTAGGGTTTCCGAGGTCAGAAAATTGAATTGTCTT GTTACAACCATTGAATTGGGCCAGCTGCATTAGGGTTTCAATGGTTGATAGGATCAGCGCTTTGCCAGACGAAATGCTCC ACCACATTCTGTCATTTCTCCCAACGGAAAACGCCGTCGCCACCGGAGTTCTTTCAAAGAGATGGACCCATCTCTGGCGC TCAGTTCCCGTTCTCGACTTGTCAACCATCAGAATGGTTCCAAGAGACGTTGATGACAACAGTTTCTTCTTCAGCGATCG TGTCTACTCTGTTCTTCTCCTTCGCGACGCCGCTTCACCCATCAAATCGTTCACCCTTGAGCTTGATAATGATGTTGCCA CTCGTCTAGACATTGCCAATGTTAGCAAATGGGTCAACTTTGTCACACAATGCAGATTTGGAGTTGAGCAACTTCTTCTC TGTGTCATCACTGTAATGGGAAAACCTGAATTGCCCATTAGCGTTTTCCGATGCAGCAGAACGTTGGTGGTTCTCAAATT GCTTGGATTCATTTTGAAAGGTGATTTTCCCATTACACTTCCATCGCTCAAAATCTTGCATTTTGATGATGTTTTATTCG CAAGTGCTTCACTCCTCAAGGAGTTTCTAGTTGGATGTCCAATTCTTGAGGATTTTCACGTGCGTTCTGTAAGTGTCGAC GGTGATTTCCCTTTTTACTTTGAAGAGCTTAAAAATGTAGGCTTGACCAAGTTGACCAGAGCAAATATTGTTGACTCTCA GAGTGATTTTCCGTTCAAACCATTTTATAATGTGAAGTCTCTGCGCGTAGAAATAGATCTGGTATGGTTATGATTGTCAT TCATGGAATGGAAAAGATTGATTAATTGAATTCATATATGTATTAGTTTCTTCATGAGTTTCACTTGATTTCTTATTGTC TCTCTAAATTGTTTAGGTGGATCATGACTTTCCTTTCTTTGATAATTTGACCCACTTGGATCTTCTCATGGAACCGGATC AATCATACTTGCTAGCAAAAATTCTCAAGCACTGCCCTAAGCTTCAAAGTCTTGTCCTTGAGGTTTGTAAAGTATTTCCT GTTTTATTTTCTTAATGTATCTTTATGTTTTAATTTAATGTCCACTATTAATCTACCTGTAGAGACCGGAGGAGAGCCGT GACCTAGAAAATTGTGACCTAGGAAATTGGGTGGACCCAGACTTTGTTCCCGAATGCCTTGCATTAAATCTTAAATCTTG TACTTTCCGAGATTTTAAAGGCTTAAAAGTTGAGTTTCAGTTAGCAAGTTATGTTTTGAAGAATGCAAGAGTTTTAGAAA CCATGACAATCTGTAACCAACAGAGTATCAGCCAAAGACAAATAAAAAAGTTATACTCAGCCGCCCTGAGGAGCCCTTCA AGATGTCAAATTACAGCTTTGATCATGTAGGCCATGTAAGTAGTAGTTCCTATATCCTGACTGTCTATTCATTAATTTCT ACATACAACTGTTGTATTTGGTTGTTTGAACTATGGACGTTGAAGGGCAAGATAAATGATTGTTATATGATTGAGCACGC CAACATGTTCTATTTCCCCTTGCTTTTGACTATATTAGATTCGTGTTTATCCAGTTTCTAGCAGTTGTATGCAAAATTCT GATTTATTACTTAACCACTGGAATAGAAGGGTTTTCATATATTATTGTTTCTCACAAGCTGACTTAGATCCATGACAAAG AAGCATGGATTAAAGATTAAACAAGTGGTTGTTACTGAACAGTTTTTTTCTGTCTTTTGATAATATAGTTTTTTTTTTCT TTTCATTTTCCCATTAAAATGACTTCGATTTAAATGGCCTTTGTGAAAAGTTGGTTGTTACATTGCACATAATATAATGA TGTTAATTGATCGATGTACTTGACCCCACTTAATATGAAAAGGCTTTTGTAGTTTCATTCAAATGATCTGATTATCATGT ATCTGTGTATTAATCAAGTTTGATCAGTAAATAACTCTCTTCAATTCTTAAAGGATTAACATTACAAAACGTGAGTTTCG GTGTAAGGCTGATTATAACAGTTTATACAGCACTGCAATTAGTTCTAGCAGAAGCATCTTGTAAGTTGTAAGATATTTGG ATACCAGCATGTGCTTCATAGACTTCTGGGAAAGAGTATTGGTTGTTGATAATGTGCAATTATGTAGACAAAGTAGCATA TTGCATGATTTTAATGGGAAGACAGGCACACTGATAATTTGGGCTGGGATCATGCAAATTTTGTTATTTGCAGTAGTTTA TTATTTGAATAATGAATTTGTATTGTTTCTTCTTATTTATATTATTACTGTTTGACATATAACTACACTGTTAAAAAAAA ATCGTTGCTACATTTGGGTTTCAGTTCCTTCCTCTCCTTCCATAGTTCTATATTTTTTTATACTAATAGCAGTATTGTTG TTGGTTGTGGGTTCTATTATTCTTAAATTTTAAAATTGCTTGTGTTTACTTGTTATATTTTGTTGAAGATTACTGTTTTT GCGAAGATATAATACTATTTTCTCTAATTCTAGAGTCATGTATTGCTAGAATATTAAGTCAATGTTGGCTAAGTAAAAAC AACCAACCTGCTACAACTAAGTAAAATGCAAAAGAAAAAGGTTGGGTTAAAAACTGGACCTGATTCATACCTTAATTAGA TAATTTGGATCTTATTGTGATTCAAACTAATGGTAATTTTGATCTTACTATTCTTTATAACCTTTTTGTAGAAATTCAAA GTCATGTTTTATTAAAGAAACGAACAGAAAAAGATAGAGGGTGAAAGAAAATTAAGAATTTGAAATAGTGAGGGAAAGAT ATAGATTGAAAGCAACTGGAAAGTTGTGATGTTATGTTAAGACGAAGTTTCTCTTTTAGAGGTACAAAGTCATAGGTTCT ATTTTGTGAACTTCCACAATTTTCCCGAATAGAAAATGAAGTTGACTCAACAAGAAAAACTGAACTAAACCACACCAAAC TGGAAATACAATTTGATCTAACTGAATTGAAACGGTTCTATCAGCTGATTCTATGGTTTCATGAATTGGCTTGGCTCAAT GAACTGAGTATGAACAAGTTTCTATGCTGTGAATTGGGTTTGAACTTGTTTAGATTTGCTTTTTTAGAACTTGTTCAGCC TCAAAATGGGTTTGTAAAACCAGTATCAGAACAGGTTCATTAAGTTAAATAACATGTTTACTTAACATTAAATTGAAGAA CTAGTATAAATAATGTCCTACAACCAATACGAAAAGAAACTTGAGAGCTATTTCAATAGTTTTAGAACTGGATATGCAAC CAGGTTATATACTCCACTAGTTTGCTGGCATATTAAATGACAACAATTAGAATGCATGTTTTAATTCATCAAATCAAATG ACAGTGGTAAAAATGGTTTGTTCTCATTAGTTTGTAGGAAGAGGGAGTGCCTAAAATGGTTCCTCTGATCTTTGTGAAAG AGTCAGCATATGAAAATTTGCATTTAGGTATATTGACTTTTTGGGTTTTCATCAAGGACTTGTGTAGAACTAAGGTGGTG GATTATGTGATTAAGATACTGACTTGTATGATAGAAGATAGTCATAGTTTGGATGGAAAGCTATGTTCTTTGATAATATC ATCATTGTGTGACAAAAAGACGTGACCAGTGGAGGCTTTGGTTATGTTTTTGTCCAGGTATCACATATTTTGAGATTTAA TTATGGATTCAAGCTTGGTGGAAGTTTGCCCGTATTCTAGTTATGAGCTCTCTCAACACTTTGAGTTTGAGGAGATCCGA GTGAAACATTTTTTTCCAAAAGGAGCGGTTGTGTATATGGAGTCTACCATCAGAGGATGTTTTGAAGTTCAATGTGGATG GTTCTTCGAAAGGTAGTTCGGGTCTAAGTGGGATAGGTGGCGTGTTGAGGAATTACAAGCAAGAAGTGGTTATTTTTTTT AAAGCTATGAGAATTATGGGCTTATGAAGTAGTATAAGTAAAAGCTATTTTGAATGCTTTGTTTTTTTGTCCGTATTTCT TGAGGCATGAGTAAAAATTCAGTTGCCCGTACTAAGTTTTTTCTTTATCAATTACCCCTTCGGTTCTAGAAAGATTGTTG TTTTTAACACTCTTTTAATATCCCAAAACGTTTGTTGTTTTAGAAAGTCAATGTATTTTTTGCTAATTTTTTCACACCTA TATCATCATTAAATACACTTTCTTTCATTTATCACCTTTCATATTAACCAACCACAACTCATCTCTATTAACTACATTCT TCTCAAACTAAGTATAATTTAATAGTTGCACATGGTACCAGTAAAATTAAATAAGAACACTTTAGTAACATTATATTATC AATATTTGTTAATCTTACTTTTTGTGCCACAACCTTAAATAACAATCTTT
CDS sequence (LotjaGi1g1v0450400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGATAGGATCAGCGCTTTGCCAGACGAAATGCTCCACCACATTCTGTCATTTCTCCCAACGGAAAACGCCGTCGC CACCGGAGTTCTTTCAAAGAGATGGACCCATCTCTGGCGCTCAGTTCCCGTTCTCGACTTGTCAACCATCAGAATGGTTC CAAGAGACGTTGATGACAACAGTTTCTTCTTCAGCGATCGTGTCTACTCTGTTCTTCTCCTTCGCGACGCCGCTTCACCC ATCAAATCGTTCACCCTTGAGCTTGATAATGATGTTGCCACTCGTCTAGACATTGCCAATGTTAGCAAATGGGTCAACTT TGTCACACAATGCAGATTTGGAGTTGAGCAACTTCTTCTCTGTGTCATCACTGTAATGGGAAAACCTGAATTGCCCATTA GCGTTTTCCGATGCAGCAGAACGTTGGTGGTTCTCAAATTGCTTGGATTCATTTTGAAAGGTGATTTTCCCATTACACTT CCATCGCTCAAAATCTTGCATTTTGATGATGTTTTATTCGCAAGTGCTTCACTCCTCAAGGAGTTTCTAGTTGGATGTCC AATTCTTGAGGATTTTCACGTGCGTTCTGTAAGTGTCGACGGTGATTTCCCTTTTTACTTTGAAGAGCTTAAAAATGTAG GCTTGACCAAGTTGACCAGAGCAAATATTGTTGACTCTCAGAGTGATTTTCCGTTCAAACCATTTTATAATGTGAAGTCT CTGCGCGTAGAAATAGATCTGGTGGATCATGACTTTCCTTTCTTTGATAATTTGACCCACTTGGATCTTCTCATGGAACC GGATCAATCATACTTGCTAGCAAAAATTCTCAAGCACTGCCCTAAGCTTCAAAGTCTTGTCCTTGAGAGACCGGAGGAGA GCCGTGACCTAGAAAATTGTGACCTAGGAAATTGGGTGGACCCAGACTTTGTTCCCGAATGCCTTGCATTAAATCTTAAA TCTTGTACTTTCCGAGATTTTAAAGGCTTAAAAGTTGAGTTTCAGTTAGCAAGTTATGTTTTGAAGAATGCAAGAGTTTT AGAAACCATGACAATCTGTAACCAACAGAGTATCAGCCAAAGACAAATAAAAAAGTTATACTCAGCCGCCCTGAGGAGCC CTTCAAGATGTCAAATTACAGCTTTGATCATGTAG
Protein sequence (LotjaGi1g1v0450400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVDRISALPDEMLHHILSFLPTENAVATGVLSKRWTHLWRSVPVLDLSTIRMVPRDVDDNSFFFSDRVYSVLLLRDAASP IKSFTLELDNDVATRLDIANVSKWVNFVTQCRFGVEQLLLCVITVMGKPELPISVFRCSRTLVVLKLLGFILKGDFPITL PSLKILHFDDVLFASASLLKEFLVGCPILEDFHVRSVSVDGDFPFYFEELKNVGLTKLTRANIVDSQSDFPFKPFYNVKS LRVEIDLVDHDFPFFDNLTHLDLLMEPDQSYLLAKILKHCPKLQSLVLERPEESRDLENCDLGNWVDPDFVPECLALNLK SCTFRDFKGLKVEFQLASYVLKNARVLETMTICNQQSISQRQIKKLYSAALRSPSRCQITALIM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 43 | 42 | 1.2E-6 | – | |
| ProSiteProfiles | 2 | 52 | 51 | 9.497 | ||
| PANTHER | 3 | 362 | 360 | 5.8E-66 | – | |
| SUPERFAMILY | 3 | 46 | 44 | 9.16E-13 | ||
| PANTHER | 3 | 362 | 360 | 5.8E-66 | – | |
| Pfam | 4 | 43 | 40 | 4.5E-6 | ||
| SMART | 8 | 48 | 41 | 0.0011 | ||
| Gene3D | 121 | 381 | 261 | 2.2E-10 | ||
| SUPERFAMILY | 129 | 362 | 234 | 2.0E-9 | – | |
| Pfam | 308 | 352 | 45 | 6.9E-13 | ||
| SMART | 313 | 382 | 70 | 0.0011 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0450400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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