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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0451200 |
Transcript ID | LotjaGi1g1v0451200.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | FBD-associated F-box protein; TAIR: AT4G10400.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9SV82|FBD40_ARATH FBD-associated F-box protein At4g10400; TrEMBL-Plants: tr|G7JB15|G7JB15_MEDTR F-box/RNI/FBD-like domain protein; Found in the gene: LotjaGi1g1v0451200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:95040372..95042855) extracted from Lotus japonicus Gifu genome v1.2.
CCCATCTACTATTGTGAACAAATTGTTTTCCTTATTTTCTCCAATCCCTCCCTTGCGAAAGCATCTCACTTCGTATTCTC TCTCGCCGGTAAGAAACCCTTTTTTCTTTTTCAGGTGCTTTCCCTCCAATGGTCGATAGGATCAGCGCTTTACCGGACGA AATCATCTGCCACATTCTATCGTTTCTCCCGACGGAAAACGCCGTCGCCACCGCCGTCCTCTCAAAGAGATGGACCCATC TCTGGCGCTCAGTTTCCGCTCTCGACTTCTCCTCCGTCAGAATGTACGAACCCGATGACCACCGTTTCTTCTTCAGCGAC ATCGTCTACTCGGTTCTTCTCTTTCGCAACGCCGCTACCCCCATCAAAAAATTCAGCCTCGAACTTGATGATGATGTTGC TGTCGCTAATCTTGACATAGCCAATATTCACAAATGGGTCAATTTTGTCACGCAATGCAGAGTTGGAGGAATCGAGCATC TTCGTCTGCATTTCATGGATTTCATTCAGTTGCCCCAGTTGCCTATTAGCATTCTCAGTTGCAAAACTCTGGTTGTTCTC AAATTGTGTGGGTTGCATTTGATCAATGGTGTGTTTTCAACTGGACTTCCCTCACTCAAAATTCTTCATGTTAAAAAAGT TGAATTCACAAGTGATGGACTACTTAAGGAGTTTCTAGCTGGATGCCCAATTCTTGAGAATTTGAAAGCGCGTCGCATTT GGATCACCGGTGAGTCCTCCTTTTACCGCGGCGGAGAGCTTGCAGACTTAGGCTTACCCAAATTGATTAGAGCAGATATC GTTCGCAGTAGGCTTCCGATGCTGCAACCATTTTATAATGTGGCCTTCCTGCGCGTAGACATAGAAGAGGTTTGATTATG ATGAATTGATGATGATTATTATGATTTATTGAATGAGAAAATGTGAATTTGGTTCCTTTATGTATTGTTTTCACACTTTT GAATTTCGCCTTGATTTCTCACAGACTGTCATTCTGAATTGTTTAGGTGCATTATGCTTTTCCTTACTTTCATAATTTGA CCCACTTGGAGCTTGTCATTGAATTGTATAATTCGCTTGTGCTAGTAGAAATGCTCAAGCACTGCCCTAACCTTCAAAGT CTTGTTTTTGAGGTTTGCAAAGTTTGGTTTTGATGATTTCTGTTTTCTTTTCTTGATAAATCTCTAATGTTTTTTTTAAT GTGTATTGTTAATCTACTTACGTGGACGGTAGAGATTGGACGAGGCCCAGAGATGTGACCCAGAAAATTGGATAGACCCA GAATTTGTTCCTGAATGTCTTTCATTTAACCTTAAAACTTGCACTCTTCGATTTTTTGAAGGCTTAAAAGCCGAGTTTCA GTTAGCAAGATATGTTTTGAAGAATGCAAGAGTTTTACAAAGCTTGACAATCTTTAACGAACGGACAATCAGCCGAAGAC AGATTAGGAAAAAGTTATCCTCAGGCTTGAGGAGCCCTTCAACTTCAAGATGTCAACTTATAATTCACCCCATTTAGGCC ATGTAAGTAGTAGTTCCTCTATATCCTGACAGTCTTTTGATCAATTTCTACATGAAACTGTGGTATTTGGTTGTTTGAAG TATGAACCTTGAAGGGCAAGAACATTGTCTTGGTGGACAAGTTAAGGAGAAATGATTCACATGATTGAGCACGCCAGCCA GTTTTATTTCCCCCTTGCTTTTGGCTTTAATTAGATTAATGTTTATCCATTTTCTAGCAGTTGTACGTAAAATTCTGATT TTATGCTTATCCACTGGGGTAGAAGGGTAAAAATTGTAAATTATTGTTTTTCAGATGCTGTCTTTGATCAATGACACAGA AACTTGGATTAAAGATTAAGCAAGTAGCTGTTACTCAAAAGGTTTTTTTTGTTGTTTGCTTTTTTATGATATTAGTGTTT TGATTTTTTAATTAAAGAGGACTTGGATTTAAATGGCCTTTGCAAAGATTTGGTTGGTTTCGATACTGTGAACTGGGTTC AAACCTGTTTTAATTTCATTTTTTAGAACTTGTTCAGCCTCAAAACGGGTTTGTAAAACCAGTATCAGAACTGGTTCTTT GAGTTCAAAAACATGTTTACCTGATATTAAGTTGAAGAACTGGTATTATGAATGTCCTACAACCTTTAGAACTAGTTAAG CTACCCGTTTATAATCACCACCAGTTTGCTTGCATATTAAATAATAAGAATTTGAATCCATGTCTTAATTAATCAACTTA AATGACATCAGTAAAAATGGTTTGTTTTCATTAGCTTGTAGGAAGAGAGTGTCTAAAATGGTTCCCCTGATCTTTGTGAA AGAGTCAGCATATGAAAATTCGCACTAAGGTATTGGAATTTTAATTTTTGGTCACGGACTTGTGTAGAAATAAGGTTGTG GTCTTGTGGATGATGCCATAAAGACACTCACTTGTATGATAAAAGATAGTCATAGTTTGAATGGGAAGCTATGGTTTTTC GGGG
CDS sequence (LotjaGi1g1v0451200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCGATAGGATCAGCGCTTTACCGGACGAAATCATCTGCCACATTCTATCGTTTCTCCCGACGGAAAACGCCGTCGC CACCGCCGTCCTCTCAAAGAGATGGACCCATCTCTGGCGCTCAGTTTCCGCTCTCGACTTCTCCTCCGTCAGAATGTACG AACCCGATGACCACCGTTTCTTCTTCAGCGACATCGTCTACTCGGTTCTTCTCTTTCGCAACGCCGCTACCCCCATCAAA AAATTCAGCCTCGAACTTGATGATGATGTTGCTGTCGCTAATCTTGACATAGCCAATATTCACAAATGGGTCAATTTTGT CACGCAATGCAGAGTTGGAGGAATCGAGCATCTTCGTCTGCATTTCATGGATTTCATTCAGTTGCCCCAGTTGCCTATTA GCATTCTCAGTTGCAAAACTCTGGTTGTTCTCAAATTGTGTGGGTTGCATTTGATCAATGGTGTGTTTTCAACTGGACTT CCCTCACTCAAAATTCTTCATGTTAAAAAAGTTGAATTCACAAGTGATGGACTACTTAAGGAGTTTCTAGCTGGATGCCC AATTCTTGAGAATTTGAAAGCGCGTCGCATTTGGATCACCGGTGAGTCCTCCTTTTACCGCGGCGGAGAGCTTGCAGACT TAGGCTTACCCAAATTGATTAGAGCAGATATCGTTCGCAGTAGGCTTCCGATGCTGCAACCATTTTATAATGTGGCCTTC CTGCGCGTAGACATAGAAGAGGTGCATTATGCTTTTCCTTACTTTCATAATTTGACCCACTTGGAGCTTGTCATTGAATT GTATAATTCGCTTGTGCTAGTAGAAATGCTCAAGCACTGCCCTAACCTTCAAAGTCTTGTTTTTGAGAGATTGGACGAGG CCCAGAGATGTGACCCAGAAAATTGGATAGACCCAGAATTTGTTCCTGAATGTCTTTCATTTAACCTTAAAACTTGCACT CTTCGATTTTTTGAAGGCTTAAAAGCCGAGTTTCAGTTAGCAAGATATGTTTTGAAGAATGCAAGAGTTTTACAAAGCTT GACAATCTTTAACGAACGGACAATCAGCCGAAGACAGATTAGGAAAAAGTTATCCTCAGGCTTGAGGAGCCCTTCAACTT CAAGATGTCAACTTATAATTCACCCCATTTAG
Protein sequence (LotjaGi1g1v0451200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVDRISALPDEIICHILSFLPTENAVATAVLSKRWTHLWRSVSALDFSSVRMYEPDDHRFFFSDIVYSVLLFRNAATPIK KFSLELDDDVAVANLDIANIHKWVNFVTQCRVGGIEHLRLHFMDFIQLPQLPISILSCKTLVVLKLCGLHLINGVFSTGL PSLKILHVKKVEFTSDGLLKEFLAGCPILENLKARRIWITGESSFYRGGELADLGLPKLIRADIVRSRLPMLQPFYNVAF LRVDIEEVHYAFPYFHNLTHLELVIELYNSLVLVEMLKHCPNLQSLVFERLDEAQRCDPENWIDPEFVPECLSFNLKTCT LRFFEGLKAEFQLARYVLKNARVLQSLTIFNERTISRRQIRKKLSSGLRSPSTSRCQLIIHPI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
ProSiteProfiles | 2 | 50 | 49 | 9.815 | ||
PANTHER | 3 | 365 | 363 | 1.6E-71 | – | |
Gene3D | 3 | 263 | 261 | 1.0E-24 | ||
SUPERFAMILY | 3 | 56 | 54 | 2.62E-13 | ||
PANTHER | 3 | 365 | 363 | 1.6E-71 | – | |
Pfam | 4 | 43 | 40 | 2.2E-7 | ||
SMART | 8 | 48 | 41 | 7.8E-4 | ||
SUPERFAMILY | 110 | 289 | 180 | 1.73E-11 | – | |
Pfam | 162 | 187 | 26 | 6.4E-4 | ||
Pfam | 305 | 349 | 45 | 6.4E-14 | ||
SMART | 310 | 381 | 72 | 1.0E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0451200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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