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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0455000 |
| Transcript ID | LotjaGi1g1v0455000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Gibberellin 2-beta-dioxygenase; TAIR: AT2G38500.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Swiss-Prot: sp|O49561|G2OX8_ARATH Gibberellin 2-beta-dioxygenase 8; TrEMBL-Plants: tr|I1N3A1|I1N3A1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0455000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:95706945..95711464) extracted from Lotus japonicus Gifu genome v1.2.
TCTGACTCTGCACTATATTATATCCTCCTCACATTGCCATAACCATAACCATTACCAACTGAATTCTATTCCCTACATAC ACGTGGCGCATGGATGACACAAGATAACTTCCATTGCAGGGAAGCACGTAACTCGCAGTCTTGCGCGTCACGCGAACTAG AGTGCACCCACCAACCACAGGGTCCCTCACCTTCCAAAGTTTTCCAAAAAAGAAAACCTCCTTTCTCACAATCACCATTT CCAAACGACGTCGTCACCCTTCTTCGTATTCTATCTTCTTCATTGAAATTCTCAGTGATTCATCCAAGTAACAATTCAGC GAAACAAACTCAAACGACGTCGTTGCCACCATTGTAACCGTTTTTGAAAATTTCTAATCTGTGTTTTCTCTGATGCGCTG AAACGACGTCGTTTCGGGGGCAGTTTTATCCGATTCGCAAACGGTGACTATTTTCACCGGAAACAAAACGGTTAGACGGC GTGGTCACATTCGTAATGCCGATCGCGCGGTGCAACAGCCAGATTCCGGTGCCGCTACCGTCGCCGGTTCCAACCGGAAG AGGATCGCGATCCGCCGCCAACGAGATCTTCAGCGAGTTTCTAGAGAAGACGCTTCAGCTGCCGGAGCTAACCTTACCGG GACCTCAACTACCGCCGGCACCGGCGGAGGTTGATCTCTGGTCACTCCCGCGCGCTTCTGCCAATCTGCTTCTGCGCTCC GCGAAGGAGTTCGGCGCATTCCGGATCCGGTGCCACGGGATCTCCGGGAATGAGCTCGGGACGGTGGCGGATGAGGCCGA GCGCGTCTTCCGCGACTCGGAGCACGACGTCGTTGAACGCGACGGAGTCGGCGCAGAGATGATTTCCTGTGTTCGGTCTA ACAAAGGAGCGCTTGAATTCACCGCTCACAAGAATCTCGGAGACGAAACGCATCGGAACTTTTGGTATATAAACTCTCGT TTTGTTTCTGATTTTGCAGATTTTATACATATGCATTGAATTTTCACTTGTTGTTCTTATGGTTTTTAATCGATTCACTA TTTCGTGTTTGCATATTTTTTTCATGTAGTGGGCTAGTGGTTTTGAAGTATATTAAATTTATATGCTTGAGAAATACTTT ATTGTTGTTACCTTATATGCTTGAGAAATACTTGTAATTTTTTTTAACAATGAGCCTTGTATGAAATTAATGTTACACAC AAATCACTTCTCAAGTCTCAACTAATCAGGTTTTATTATTTGATAACTTGAATATATTCTCACATGTACTGTTGATTGTT TTTCTTCACTCTAGTGTTAGATATTGTGTGTTATGAAGGTTGTTAACCAAGCATTACTCTTATGGATCCAGTTGTAGCAA ATGTATAGATATGTGTGTTCTCTCAAGGTATTGTTTGGTTGAGGAGAGAAAGAGAGAAGAAAGAATATGTGTAGAGACTA GAGAGAAAGATGTTAGAAATAGAGTAGATTTTGCAGGTTGTTTGGTATGATAGAAGGAAAAGAGAATGAATGAGATGAAA TTTCTATGCTTTGTTTTGTTGATAAGAGAAAGGAAAAGGAGAAGATTTCTTTTATGTAAAATGCCATTTTAGCCCCTTAC CATATAAATATGCAAACTGTTGATCAAAGGATAGAAGTGTAAAGCACAATAGAGTACAACTTTCTCTCCACCCTAAAACT CCCTCTTCTTTAACTATTCCTAGAAACCAAACACGGGTGAAAGTGGTCCTTCACTTTTATCTCGCCTTTGGAATTTCTCT CTTGAGCATTTCTTTCATAACAAACACATTGTAAATTTTAAGTCCATCATTCTCTGTTTATTAGCTTGTAAGTTCCAAAA GGCCAAGGAAGGTCTAGATACTCCCTAGAATGTATATATTAAGAATCACACACACTCACACATAATACACACACACACAC ACACACATATTGAGAATAAATTCTCTAGGTCTTTAATTAGTGATTAATATGTTCATTATCATAAAATTCTTAAAAGAGAA GTGCCAAATAAACTCACTTTAACTCTTTTTATCCGTCTCTCATTTATTAGTTAAAATTCATGTCTGTCCCGCTAAGTTAG AAGTGTGACGGCCCATATAATTTAATGGATGACACATGAATTTTAGCTAATAAAAGAAAATGTATTGGACAAAATGTATT AAATCGTATGTTGGTAGCATTTCTCTTCTCATATAATAATTCAAATACCATAGGTGGGGGTGGGTTTACCTATCTTATAG GTTGAGATAGAAATGAGCCTAAACACTTGGAGGATACAAATACATCAAACTAAAAAGACCTTGATTTTTTATAAAGCTGA ATCACATTGTTTGATGATGTAGTTCATTATTGATCCTATTGGGCTGTTGGTTTGAAATTGCTATATAACTAATTCGATAG TCAAGTGTAGTAGGAATTGGTTTACTTAACTTTATTATATATTTTTTACATCTATAGTTACTTATCTAATTGGGAAGAAG GTACCAACTTGTTTGAGAAGAACATAATTCTTGTATCCAATTGAGACAAAACAAGGTGCATGCTAATTTGTTTCAAATAA CATGCAGGGTTCACATGGGGAATGTCGCGAGTAGAATGGATAGTATAGTGGAGCAAGTGACTCTGGCTCTACAAAAGGAC AGTAAATCTGAAGAGTTTAAGGAGCGGATTCAAGAGACAGAGTCTATGATTTGCCTGTGCAGGTATCCGCACGACAATGC CCCCAAACAAAATGAAGGCGTCTCAGATAAGAAAAACGACAGTTTAAAAGATCATGCTTTGCGCTTCTACCTTCCCTTGG AGCATTGCATATTTTACATCCAAACTGAAAGAGGTCCCCTGTCATTTGATGCAGGTCCAGAGAATATAGTTGTCACAGTT GGCAAACAGCTAGAGGTAATTTAGTTTCATCTTTTGTTTCAAAATTCAGTGATGCATGTGGGTATTTTTTTACCTTGAGT TTGAAACTGATGTGTCACCTTAAGTGTGAAGTATTTTATACTACTATAAATTTGGATCCCGTGTGTTTAGGCAAATTTTA AATTCACACACTCAGGGAATCTGAGTGCTTCGATTAAAATTGGATGGTTTCAATCTTAGTAGAACATATGAGCACCATGA TTTTAATGGAATGACTCAGATTACTTAAATATGTGAGTTTATGGTTGTTCTGAGGGAAGGAACCCAAAATCAGTTTAATT TTACATTAACGACATATGAAAACTAAACCCTTATATTTAATTCAGATAAAAACAGTTCCATATGTTTAATGAAGTTAACA TTGTTGTATTACCCTATAATTGCTCTTTTTGAAAGAGTCACTCAATGTAACATGATCTGGTGCTGCAAATAATCAGGAAA GAGATCAAGTATTAGAAAAATCAAGTATTAGCTATGAACTTAAAAATCCAGTTATCTAATTAGAAAGGGTCTTCTATTTG ATATTTAGTGATATGATATGTAACGAGCAGAAACTTAACAAAGATTTTACTTTATGAATATAGGAGTGGAGCCGTGGTGT ATTCAAATGTGTTCCTGGGGAAATGATTTTCATGCCGAGTATCCAGGGTAGTGACGCTTCCTTCTCCATAGAGCTTACGT GCTCGACCTCTTTAAATCTAAATCAAAGTTTAAAAGTTTCTGAAAAGATAATATCCTTAACTGATCAAATCCTTATTGTA TTTTCCCTTGCATTCTTATGCAAATTTTTATACTTCATATTTTCTTGATCCTCAGAACATGGTTGCACCATTTTCTTTTC TTTTGATGCCCTTTGTGAGTGGTCATGATGTTGATCTTAGCCATTGGCACCATTCTTTCTCTTGCCTTTTGTTTCTCTTC AATTTATTTACAGCAGTCATTTTGACGTACAGTTTGAGTGTAAAGGTTGTGGGTTTTGGTTAAAATACTAGATGCTATGT TGTTCTTAGCAAAAATGTTGTATGCATACATAGGGAATGTTGCATAGACACAGGAAGTAAAGATATGCTTATTGGTAGTT GGAATTGATTGATCAAAGTTTGTATAACTAGTATGGTGATTGTTGAGACACTTTGGATTCAAATCCAAATTCAATATTGT GTGTGAAGCTGTATAAACTTTCGGACTATTCATGCTAAGAGCATTTATATATAACAGAACTGTTTAGGGTTTTAAATTGC AGTTGTGGTCATAGTTACCTTGCGAAACAATGATGTTGTTGCTGGGATTTTAAAACTTTTTATGTTGAGGCTGCAATTGC AATTGCATAATGCAATTTGAAACCCTGAAACTAGTTATGACGCACTAGTATCTTATCCTCTTGCATGCAATTTCCCGCCA CATTATGTAATTTTTTCAATTTGTGATATTCTCTTTTTTTCACATTTCACATTTCTTCAAACACGTACTAGTATCTTATC CTCTTCCATCAAAATATCTCACCTCCCCTCTTTTTCTTTGAATTAAACACTGCACAAACAACAGGATTCATGTTCTCACA TACCATTCTTACACGACTTCTTTTAGTAGTAAAACAAGAT
CDS sequence (LotjaGi1g1v0455000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGATCGCGCGGTGCAACAGCCAGATTCCGGTGCCGCTACCGTCGCCGGTTCCAACCGGAAGAGGATCGCGATCCGC CGCCAACGAGATCTTCAGCGAGTTTCTAGAGAAGACGCTTCAGCTGCCGGAGCTAACCTTACCGGGACCTCAACTACCGC CGGCACCGGCGGAGGTTGATCTCTGGTCACTCCCGCGCGCTTCTGCCAATCTGCTTCTGCGCTCCGCGAAGGAGTTCGGC GCATTCCGGATCCGGTGCCACGGGATCTCCGGGAATGAGCTCGGGACGGTGGCGGATGAGGCCGAGCGCGTCTTCCGCGA CTCGGAGCACGACGTCGTTGAACGCGACGGAGTCGGCGCAGAGATGATTTCCTGTGTTCGGTCTAACAAAGGAGCGCTTG AATTCACCGCTCACAAGAATCTCGGAGACGAAACGCATCGGAACTTTTGGGTTCACATGGGGAATGTCGCGAGTAGAATG GATAGTATAGTGGAGCAAGTGACTCTGGCTCTACAAAAGGACAGTAAATCTGAAGAGTTTAAGGAGCGGATTCAAGAGAC AGAGTCTATGATTTGCCTGTGCAGGTATCCGCACGACAATGCCCCCAAACAAAATGAAGGCGTCTCAGATAAGAAAAACG ACAGTTTAAAAGATCATGCTTTGCGCTTCTACCTTCCCTTGGAGCATTGCATATTTTACATCCAAACTGAAAGAGGTCCC CTGTCATTTGATGCAGGTCCAGAGAATATAGTTGTCACAGTTGGCAAACAGCTAGAGGAGTGGAGCCGTGGTGTATTCAA ATGTGTTCCTGGGGAAATGATTTTCATGCCGAGTATCCAGGGTAGTGACGCTTCCTTCTCCATAGAGCTTACGTGCTCGA CCTCTTTAAATCTAAATCAAAGTTTAAAAGTTTCTGAAAAGATAATATCCTTAACTGATCAAATCCTTATTGTATTTTCC CTTGCATTCTTATGCAAATTTTTATACTTCATATTTTCTTGA
Protein sequence (LotjaGi1g1v0455000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPIARCNSQIPVPLPSPVPTGRGSRSAANEIFSEFLEKTLQLPELTLPGPQLPPAPAEVDLWSLPRASANLLLRSAKEFG AFRIRCHGISGNELGTVADEAERVFRDSEHDVVERDGVGAEMISCVRSNKGALEFTAHKNLGDETHRNFWVHMGNVASRM DSIVEQVTLALQKDSKSEEFKERIQETESMICLCRYPHDNAPKQNEGVSDKKNDSLKDHALRFYLPLEHCIFYIQTERGP LSFDAGPENIVVTVGKQLEEWSRGVFKCVPGEMIFMPSIQGSDASFSIELTCSTSLNLNQSLKVSEKIISLTDQILIVFS LAFLCKFLYFIFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 314 | 314 | - | – | |
| PANTHER | 4 | 333 | 330 | 6.6E-110 | – | |
| PANTHER | 4 | 333 | 330 | 6.6E-110 | – | |
| SUPERFAMILY | 59 | 270 | 212 | 3.43E-7 | – | |
| TMHMM | 310 | 332 | 23 | - | – | |
| Phobius | 315 | 332 | 18 | - | – | |
| Phobius | 333 | 333 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0455000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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