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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0459800 |
| Transcript ID | LotjaGi1g1v0459800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein RETICULATA, chloroplastic; TAIR: AT3G08640.1 alphavirus core family protein (DUF3411); Swiss-Prot: sp|Q9C9Z2|RER3_ARATH Protein RETICULATA-RELATED 3, chloroplastic; TrEMBL-Plants: tr|A0A0B2R799|A0A0B2R799_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0459800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96319547..96320608) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAACCACCGCTCTCCTTCGTTTTTCTCCTCTCTCTGGTCACTCTCATGCACTCTCTTTCCCATCATCATTACCATC ACCCCAGACTCAGAATCGTTCTATATACCTCACCAACCCACCTCGTTTGCCTGAAAGATTGCAACTTTCCTTCGCCGGAG GTGACGGCGGTGATGGGGTTGGGCGTGGTGGAGGTGGTGGCGGTGGTGGTGGTGGTGATGAAAGTAAGAGTGATGGTGGA AGTGGAAATTCCAATGATTCATCTTTTGGGATTTTGGGTCTCTTTCTGAATGGATGGAGATCAAGGGTTGCTGCTGATCC ACAATTTCCATTCAAGGTTTTGATGGAGGAGTTGGTAGGTGTGACTGCTTGTGTTCTTGGTGACATGGCTTCAAGGCCTA ATTTTGGGTTGAATGAGCTTGACTTTGTTTTTTCAACTCTTGTTGTTGGTGCTATTCTCAATTTCACACTCATGTATCTT TTAGCACCTAGTCTAGGATCAGCTTCAGCTAAAGTTCCTTCAATTTTTGCCTCTTGTCCCAAGAGTCACATGTTTGAGCC TGGTGCTTACAGCCTTCTAGATAGGTTTGGGACTTTGGTGTACAAAGGAACCATTTTTGCTGTTGTTGGATTTGGTGCTG GACTAGTTGGAACCACACTTTCAAATGGGTTGATCAAGTTGAGGAAGAAGATGGATCCCACTTTTGAGAGCCCCAACAAG CCTCCACCTACTTTGTTGAATTCTCTCACTTGGGCTGGTCACATGGGTCTTAGCAGCAATCTCAGGTATCAAACTCTGAA TGGTGCAGAGTTCATGTTGGAGAGAGTGCTGAACCCCTTTGCATTCAAGTCCTCTGTGTTGGTGTTAAGGTGTTTGAACA ATGTTCTTGGTGGTGTGTCTTTTGTGGTGTTGGCAAGGCTAACAGGAGCACAGAGTGTTGGGGAAGAGAAGCCAACACCA GCATATGTGAAGGTTGGGTTAACTGACAAGGAGAAGGTGGAGGTTGAAAGGGAAAGGGAAGAGGGTTTGCAGGAGAATCA GACAACAACACCATCAAAGTGA
CDS sequence (LotjaGi1g1v0459800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACCACCGCTCTCCTTCGTTTTTCTCCTCTCTCTGGTCACTCTCATGCACTCTCTTTCCCATCATCATTACCATC ACCCCAGACTCAGAATCGTTCTATATACCTCACCAACCCACCTCGTTTGCCTGAAAGATTGCAACTTTCCTTCGCCGGAG GTGACGGCGGTGATGGGGTTGGGCGTGGTGGAGGTGGTGGCGGTGGTGGTGGTGGTGATGAAAGTAAGAGTGATGGTGGA AGTGGAAATTCCAATGATTCATCTTTTGGGATTTTGGGTCTCTTTCTGAATGGATGGAGATCAAGGGTTGCTGCTGATCC ACAATTTCCATTCAAGGTTTTGATGGAGGAGTTGGTAGGTGTGACTGCTTGTGTTCTTGGTGACATGGCTTCAAGGCCTA ATTTTGGGTTGAATGAGCTTGACTTTGTTTTTTCAACTCTTGTTGTTGGTGCTATTCTCAATTTCACACTCATGTATCTT TTAGCACCTAGTCTAGGATCAGCTTCAGCTAAAGTTCCTTCAATTTTTGCCTCTTGTCCCAAGAGTCACATGTTTGAGCC TGGTGCTTACAGCCTTCTAGATAGGTTTGGGACTTTGGTGTACAAAGGAACCATTTTTGCTGTTGTTGGATTTGGTGCTG GACTAGTTGGAACCACACTTTCAAATGGGTTGATCAAGTTGAGGAAGAAGATGGATCCCACTTTTGAGAGCCCCAACAAG CCTCCACCTACTTTGTTGAATTCTCTCACTTGGGCTGGTCACATGGGTCTTAGCAGCAATCTCAGGTATCAAACTCTGAA TGGTGCAGAGTTCATGTTGGAGAGAGTGCTGAACCCCTTTGCATTCAAGTCCTCTGTGTTGGTGTTAAGGTGTTTGAACA ATGTTCTTGGTGGTGTGTCTTTTGTGGTGTTGGCAAGGCTAACAGGAGCACAGAGTGTTGGGGAAGAGAAGCCAACACCA GCATATGTGAAGGTTGGGTTAACTGACAAGGAGAAGGTGGAGGTTGAAAGGGAAAGGGAAGAGGGTTTGCAGGAGAATCA GACAACAACACCATCAAAGTGA
Protein sequence (LotjaGi1g1v0459800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATTALLRFSPLSGHSHALSFPSSLPSPQTQNRSIYLTNPPRLPERLQLSFAGGDGGDGVGRGGGGGGGGGGDESKSDGG SGNSNDSSFGILGLFLNGWRSRVAADPQFPFKVLMEELVGVTACVLGDMASRPNFGLNELDFVFSTLVVGAILNFTLMYL LAPSLGSASAKVPSIFASCPKSHMFEPGAYSLLDRFGTLVYKGTIFAVVGFGAGLVGTTLSNGLIKLRKKMDPTFESPNK PPPTLLNSLTWAGHMGLSSNLRYQTLNGAEFMLERVLNPFAFKSSVLVLRCLNNVLGGVSFVVLARLTGAQSVGEEKPTP AYVKVGLTDKEKVEVEREREEGLQENQTTTPSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 141 | 141 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| MobiDBLite | 16 | 38 | 23 | - | – | |
| MobiDBLite | 16 | 84 | 69 | - | – | |
| PANTHER | 32 | 318 | 287 | 5.1E-148 | – | |
| PANTHER | 32 | 318 | 287 | 5.1E-148 | – | |
| Pfam | 102 | 268 | 167 | 9.7E-61 | ||
| TMHMM | 140 | 162 | 23 | - | – | |
| Phobius | 142 | 162 | 21 | - | – | |
| Phobius | 163 | 198 | 36 | - | – | |
| Phobius | 199 | 221 | 23 | - | – | |
| TMHMM | 203 | 225 | 23 | - | – | |
| Phobius | 222 | 353 | 132 | - | – | |
| MobiDBLite | 333 | 353 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0459800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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