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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0462300 |
| Transcript ID | LotjaGi1g1v0462300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Methylsterol monooxygenase 1-1-like protein; TAIR: AT4G12110.1 sterol-4alpha-methyl oxidase 1-1; Swiss-Prot: sp|Q8L7W5|SMO11_ARATH Methylsterol monooxygenase 1-1; TrEMBL-Plants: tr|A0A0B2RB68|A0A0B2RB68_GLYSO Methylsterol monooxygenase 1-2; Found in the gene: LotjaGi1g1v0462300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96676604..96678268) extracted from Lotus japonicus Gifu genome v1.2.
CCTCCACCTTCTTTTCTCCTCCACCATGCTTCCCTACCAGACCCTTGAAGAAGCACAAGACGCCCTTGGCAGAGGGTTAA CTCTTGCTGAGACATTATGGTTCAAATATTCAGCCAAGAAACCTGATTTTGTTCTTCATTGCCACAACACACTATTTTTG TGTTTGTTTTACTCTATAGCTCCTATTCCATTCGTATTGATTGAGCTTAGTGGCCACAAGAAGTTTAACAAATACAAGAT TCAGCCCTGGGTGAAGAGATCATTCTGGGAAATGTTCAAGTGCTACAAGGATGTCATGCAAACGTTTGTCATTGCTGTTG GTCCTCTACAGATAATTTCTTACCCCACCATAAAGGTACGTATACCCCTACTATACTTTAGCTTAGACTATATTGGAGAT TGAATCCACCACACTATATATAATTATATATCATGGTTGAATGGTTGAGGATACATTGATTCTGGATAAACAATGTAATT TTACAGTAATGAATAACTTCTATAACAAAACTTAATTTTTGCCATTTCAATCATTCAGTTAATATATATTACTTTTTTTT TTCATTTGGCCACCAGTCTCCACGGAGAAATGAGCCTCACGTGGCTAATTTTACTCATAATACAATGGTGATATATATAT TTACCATTTCAATCATTCGGTTATGTGTTACTTTAGTCCCATTGGATGTCGATCGTGTTGTTAAAAGTAGTTGTTTGAAC ATTTGAAGTTAAGAGTCTAAAATTAAAGGAGATTAACTTTTAAGAAGACATTTAACCTTTCTTACACGCAAATCGAACCG GATTACCTCAAGAAAGATAAATGTAGTTAAGATAAGGCAGTTCCACTCTAAATTATGATGCATACAAAATATAAGGCTCA CAGTAGTGAATTTTCTTCAATTGATTGATGCTAAATTTCACACAATCGGCAACATAAAACTATTTCCTCAATTTCAAATA TTTTCAATTTTTTAAGTTTCAGTCTTTATAAAATGCTACTAATAATATAATTCAAAACCCCAAACAATATTCCTTTTTAT TCACCACTTGATTAGAAAACAATTGTATGTCACTATCAAAAAAAAAAAAACAATTGTATGTCACTCACTCCCTATAAATA TCTTTTCTAAAATTCAAATTTATGGTCTCATCTTTATCGAGGTCTAACTTACTTACCATTAAAACTCAAACCAACAATAT TTTATACTTGTATTATAAATTTTTATTGTTATTAATTAAAGAAGGGTTAAATAAGGTTTTGGTCCCTATATAATAAGTTT GAAAACGATCCTTCTCCAGAGCAAAGTTTACACTCAGTCTCTACTGTTTGAGAAACTACCTAACATTTTAGTCTCTGTCG AAGGTGGTGGTCCAGTGACATTTGCCCCATGGCTTCACCGATCCTAGCGTAATATCCACATATATAGATTCACTAATTGC CAGAGTTAGTGGCAAATGTCACTGGATCACCACCAAAAAGTAATAATTAATTTTTTTTCATGGATTTCAAATATTCATAT CACAAGGTACAACCATTCTTATCATTCTCTCTGGATCCCTCTCAACTCACCCACTCCTAACTTAGGTATCAGAGTGACTT TACAAGGTCTCATCCGGGCTGGTTCATCAGAAAACGGAGCTACTGTGACACCATCACCTCCTCAG
CDS sequence (LotjaGi1g1v0462300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCCCTACCAGACCCTTGAAGAAGCACAAGACGCCCTTGGCAGAGGGTTAACTCTTGCTGAGACATTATGGTTCAA ATATTCAGCCAAGAAACCTGATTTTGTTCTTCATTGCCACAACACACTATTTTTGTGTTTGTTTTACTCTATAGCTCCTA TTCCATTCGTATTGATTGAGCTTAGTGGCCACAAGAAGTTTAACAAATACAAGATTCAGCCCTGGGTGAAGAGATCATTC TGGGAAATGTTCAAGTGCTACAAGGATGTCATGCAAACGTTTGTCATTGCTGTTGGTCCTCTACAGATAATTTCTTACCC CACCATAAAGGTATCAGAGTGA
Protein sequence (LotjaGi1g1v0462300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLPYQTLEEAQDALGRGLTLAETLWFKYSAKKPDFVLHCHNTLFLCLFYSIAPIPFVLIELSGHKKFNKYKIQPWVKRSF WEMFKCYKDVMQTFVIAVGPLQIISYPTIKVSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 41 | 41 | - | – | |
| PANTHER | 1 | 110 | 110 | 1.7E-53 | – | |
| PANTHER | 1 | 110 | 110 | 1.7E-53 | – | |
| TMHMM | 41 | 63 | 23 | - | – | |
| Phobius | 42 | 61 | 20 | - | – | |
| Phobius | 62 | 113 | 52 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0462300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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